mRNA_L-digitata_M_contig10111.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10111.2.1
Unique NamemRNA_L-digitata_M_contig10111.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10111.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10111contigL-digitata_M_contig10111:2888..3279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size392
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.5059433-CDS-L-digitata_M_contig10111:2887..32771682406614.5059433-CDS-L-digitata_M_contig10111:2887..3277Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10111 2888..3277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10111.2.1prot_L-digitata_M_contig10111.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10111 2888..3277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10111.2.1

>prot_L-digitata_M_contig10111.2.1 ID=prot_L-digitata_M_contig10111.2.1|Name=mRNA_L-digitata_M_contig10111.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=130bp
ASAALPPVPTPAPAQAQAQGTPVAPAAAAAATTAQTTTSNTPPSALPTVA
TAEGMYKGAFPMGRVLGLVENGVSGGDGKEHGEGVGLKLPGGILLDDRAT
LNADDSSGGGGGGGAGGAGGAVTNTLPGSG
back to top

mRNA from alignment at L-digitata_M_contig10111:2888..3279+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10111.2.1 ID=mRNA_L-digitata_M_contig10111.2.1|Name=mRNA_L-digitata_M_contig10111.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=392bp|location=Sequence derived from alignment at L-digitata_M_contig10111:2888..3279+ (Laminaria digitata LdigPH10_18mv male)
GCCTCCGCGGCGCTTCCACCGGTACCAACACCAGCACCAGCACAAGCACA
AGCACAAGGAACACCAGTTGCTCCTGCTGCCGCTGCCGCTGCGACTACAG
CACAGACCACTACGAGTAACACCCCTCCTAGCGCACTCCCTACTGTTGCT
ACTGCTGAGGGAATGTACAAGGGGGCGTTTCCGATGGGTAGGGTGCTTGG
TCTCGTGGAAAACGGCGTTAGCGGCGGTGATGGCAAGGAGCACGGAGAGG
GGGTGGGTTTAAAGTTACCAGGAGGGATTCTTCTTGATGACCGCGCGACA
CTGAACGCAGACGACAGCAGTGGCGGCGGCGGCGGCGGCGGCGCTGGTGG
CGCTGGTGGCGCGGTCACCAACACCCTGCCTGGCTCGGGGAA
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig10111:2888..3279+

>mRNA_L-digitata_M_contig10111.2.1 ID=mRNA_L-digitata_M_contig10111.2.1|Name=mRNA_L-digitata_M_contig10111.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=390bp|location=Sequence derived from alignment at L-digitata_M_contig10111:2888..3279+ (Laminaria digitata LdigPH10_18mv male)
GCCTCCGCGGCGCTTCCACCGGTACCAACACCAGCACCAGCACAAGCACA
AGCACAAGGAACACCAGTTGCTCCTGCTGCCGCTGCCGCTGCGACTACAG
CACAGACCACTACGAGTAACACCCCTCCTAGCGCACTCCCTACTGTTGCT
ACTGCTGAGGGAATGTACAAGGGGGCGTTTCCGATGGGTAGGGTGCTTGG
TCTCGTGGAAAACGGCGTTAGCGGCGGTGATGGCAAGGAGCACGGAGAGG
GGGTGGGTTTAAAGTTACCAGGAGGGATTCTTCTTGATGACCGCGCGACA
CTGAACGCAGACGACAGCAGTGGCGGCGGCGGCGGCGGCGGCGCTGGTGG
CGCTGGTGGCGCGGTCACCAACACCCTGCCTGGCTCGGGG
back to top