mRNA_L-digitata_M_contig101109.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101109.2.1
Unique NamemRNA_L-digitata_M_contig101109.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101109.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101109contigL-digitata_M_contig101109:300..659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size360
Hectar predicted targeting categoryother localisation
Exons1
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.4756756-CDS-L-digitata_M_contig101109:299..6591682406614.4756756-CDS-L-digitata_M_contig101109:299..659Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101109 300..659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101109.2.1prot_L-digitata_M_contig101109.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101109 300..659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101109.2.1

>prot_L-digitata_M_contig101109.2.1 ID=prot_L-digitata_M_contig101109.2.1|Name=mRNA_L-digitata_M_contig101109.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=120bp
MIFDQLNTLIDDMIKTLHSERQAVASLDVTALNALTSQKLEQVDHLRSLM
EELPKNACEAADVRRRVARVSIEAEANAILVKDGLDVIRVLLGAGAEPGV
YNARGAIAERDRQGVARSI*
back to top

mRNA from alignment at L-digitata_M_contig101109:300..659-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101109.2.1 ID=mRNA_L-digitata_M_contig101109.2.1|Name=mRNA_L-digitata_M_contig101109.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=360bp|location=Sequence derived from alignment at L-digitata_M_contig101109:300..659- (Laminaria digitata LdigPH10_18mv male)
ATGATCTTCGACCAACTCAATACTCTGATTGACGACATGATTAAGACGCT
CCACAGCGAGCGCCAAGCCGTGGCGTCTCTCGACGTAACAGCGCTGAACG
CGCTGACGTCCCAAAAGCTCGAACAGGTCGACCACCTTCGGTCCCTGATG
GAGGAGCTACCAAAGAATGCGTGCGAGGCGGCGGATGTCCGTCGAAGAGT
CGCCCGCGTCTCGATCGAGGCGGAGGCGAACGCGATCTTAGTAAAGGATG
GGCTCGATGTGATTCGAGTCCTGCTTGGGGCGGGGGCCGAACCCGGCGTG
TACAACGCCAGGGGTGCGATTGCGGAGAGGGATCGTCAGGGCGTGGCAAG
GAGCATCTAG
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101109:300..659-

>mRNA_L-digitata_M_contig101109.2.1 ID=mRNA_L-digitata_M_contig101109.2.1|Name=mRNA_L-digitata_M_contig101109.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=360bp|location=Sequence derived from alignment at L-digitata_M_contig101109:300..659- (Laminaria digitata LdigPH10_18mv male)
ATGATCTTCGACCAACTCAATACTCTGATTGACGACATGATTAAGACGCT
CCACAGCGAGCGCCAAGCCGTGGCGTCTCTCGACGTAACAGCGCTGAACG
CGCTGACGTCCCAAAAGCTCGAACAGGTCGACCACCTTCGGTCCCTGATG
GAGGAGCTACCAAAGAATGCGTGCGAGGCGGCGGATGTCCGTCGAAGAGT
CGCCCGCGTCTCGATCGAGGCGGAGGCGAACGCGATCTTAGTAAAGGATG
GGCTCGATGTGATTCGAGTCCTGCTTGGGGCGGGGGCCGAACCCGGCGTG
TACAACGCCAGGGGTGCGATTGCGGAGAGGGATCGTCAGGGCGTGGCAAG
GAGCATCTAG
back to top