mRNA_L-digitata_M_contig101109.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101109.1.1
Unique NamemRNA_L-digitata_M_contig101109.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig101109.1.1 vs. uniprot
Match: A0A1Y0H6P7_9BACT (Flagellar hook-associated protein 1 n=1 Tax=Armatimonadetes bacterium Uphvl-Ar2 TaxID=2004468 RepID=A0A1Y0H6P7_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 4.550e-8
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:    1 MAGLYSQLYLGSSALSAHRTGVSAAGHNIANVNTPGHTRVGVD---LRAQNAFIGGVRSHGYTTSADLILHQRERLADG-------DMGRATDLASAAASLEG 279
            M+G +S L++ SSAL + + G+  AGHN+ANVNTPG++R  VD   L  Q  +  G+ S G   +   I   R+   DG       D+ RAT L+     +EG
Sbjct:    1 MSGSFSGLFISSSALRSFQRGIETAGHNLANVNTPGYSRQRVDFATLPPQTFYQRGMMSVGRGVTLGSIARARDMFLDGSRRNVESDLNRATTLSQQMTRIEG 103
[Close]
BLAST of mRNA_L-digitata_M_contig101109.1.1 vs. uniprot
Match: A0A1F6CW57_HANXR (Flagellar hook-associated protein 1 n=1 Tax=Handelsmanbacteria sp. (strain RIFCSPLOWO2_12_FULL_64_10) TaxID=1817868 RepID=A0A1F6CW57_HANXR)

HSP 1 Score: 53.5 bits (127), Expect = 3.590e-6
Identity = 36/96 (37.50%), Postives = 51/96 (53.12%), Query Frame = 1 
Query:    1 MAGLYSQLYLGSSALSAHRTGVSAAGHNIANVNTPGHTRVGVDLRAQNAFIG---GVRSHGYTTSADLILHQRERLADGDMGRATDLASAAASLEG 279
            M+GL   + +G SAL A + G+S AG NIANVNTPG +R    L       G   GV+    + + D +L  + R  +G  GR   +  A A++EG
Sbjct:    1 MSGLLGAIEIGRSALRAQQIGISVAGDNIANVNTPGFSRRQAKLVTSEPAAGLGTGVKVTDVSRTRDQLLDAQVRFQNGLFGRLDTMQKAFATIEG 96
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101109.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1Y0H6P7_9BACT4.550e-837.86Flagellar hook-associated protein 1 n=1 Tax=Armati... [more]
A0A1F6CW57_HANXR3.590e-637.50Flagellar hook-associated protein 1 n=1 Tax=Handel... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101109contigL-digitata_M_contig101109:2..286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1121406.JAEX01000002_gene1109
Preferred nameflgK
PFAMsFlg_bb_rod,Flg_bbr_C
Model size285
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K02396
KEGG Pathwayko02040,map02040
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.57e-05
EggNOG OGsCOG1256@1|root,COG1749@1|root,COG1256@2|Bacteria,COG1749@2|Bacteria,1MV2M@1224|Proteobacteria,42PBN@68525|delta/epsilon subdivisions,2WMMT@28221|Deltaproteobacteria,2M8P7@213115|Desulfovibrionales
DescriptionBelongs to the flagella basal body rod proteins family
Cds size285
COG categoryN
BRITEko00000,ko00001,ko02035
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.4455628-CDS-L-digitata_M_contig101109:1..2861682406614.4455628-CDS-L-digitata_M_contig101109:1..286Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101109 2..286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101109.1.1prot_L-digitata_M_contig101109.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101109 2..286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101109.1.1

>prot_L-digitata_M_contig101109.1.1 ID=prot_L-digitata_M_contig101109.1.1|Name=mRNA_L-digitata_M_contig101109.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=95bp
MAGLYSQLYLGSSALSAHRTGVSAAGHNIANVNTPGHTRVGVDLRAQNAF
IGGVRSHGYTTSADLILHQRERLADGDMGRATDLASAAASLEGAL
back to top

mRNA from alignment at L-digitata_M_contig101109:2..286-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101109.1.1 ID=mRNA_L-digitata_M_contig101109.1.1|Name=mRNA_L-digitata_M_contig101109.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=285bp|location=Sequence derived from alignment at L-digitata_M_contig101109:2..286- (Laminaria digitata LdigPH10_18mv male)
ATGGCAGGGCTATACTCCCAGCTCTATCTTGGCAGCAGCGCACTGAGTGC
GCATCGCACCGGTGTGTCCGCAGCGGGCCACAACATCGCCAACGTCAATA
CACCCGGGCACACCCGGGTCGGCGTCGATCTCCGCGCCCAGAACGCCTTC
ATCGGAGGTGTGCGCTCTCACGGATATACGACAAGCGCTGACCTTATCTT
GCACCAGCGTGAACGCCTCGCCGACGGCGACATGGGGCGCGCAACAGATC
TTGCCAGCGCGGCAGCTTCACTCGAAGGCGCGCTC
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101109:2..286-

>mRNA_L-digitata_M_contig101109.1.1 ID=mRNA_L-digitata_M_contig101109.1.1|Name=mRNA_L-digitata_M_contig101109.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=285bp|location=Sequence derived from alignment at L-digitata_M_contig101109:2..286- (Laminaria digitata LdigPH10_18mv male)
ATGGCAGGGCTATACTCCCAGCTCTATCTTGGCAGCAGCGCACTGAGTGC
GCATCGCACCGGTGTGTCCGCAGCGGGCCACAACATCGCCAACGTCAATA
CACCCGGGCACACCCGGGTCGGCGTCGATCTCCGCGCCCAGAACGCCTTC
ATCGGAGGTGTGCGCTCTCACGGATATACGACAAGCGCTGACCTTATCTT
GCACCAGCGTGAACGCCTCGCCGACGGCGACATGGGGCGCGCAACAGATC
TTGCCAGCGCGGCAGCTTCACTCGAAGGCGCGCTC
back to top