mRNA_L-digitata_M_contig101104.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101104.1.1
Unique NamemRNA_L-digitata_M_contig101104.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101104.1.1 vs. uniprot
Match: A0A2E7I5V5_9PROT (Toluene tolerance protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7I5V5_9PROT)

HSP 1 Score: 218 bits (556), Expect = 8.000e-70
Identity = 109/159 (68.55%), Postives = 126/159 (79.25%), Query Frame = 1
Query:    1 DASLTTEQGRAEFRRLFRDGFAVNGIARFVAGRYWRKASDADRAEYLKLFEDVIVNTWADRFSQYSGQKFEVRGATDATPEKSAEDVALVESLFFTSPTSPVRLEWRVASKGDLFKIVDVKLEGISMATTQRDEFNSVVSKNGRSLEALIEELRRRRDG 477
            DA +  E+ RA+FR LFR+GFA++GIARF  GRYWR AS  +R EYL LFEDVIVNTWADRFS YSGQKFEV  ATD  P    E VALV SLFFT P++PVR+EWRVAS+G++ KIVDVK EGISMA TQRDEFNSV+  NGR L AL+ +LR+ RDG
Sbjct:   48 DAEIMNEERRAQFRSLFREGFAIHGIARFALGRYWRGASKDEREEYLLLFEDVIVNTWADRFSLYSGQKFEVIDATDE-PTNGPEKVALVSSLFFTRPSAPVRIEWRVASQGNVIKIVDVKFEGISMANTQRDEFNSVIRNNGRKLSALLIQLRKMRDG 205          
BLAST of mRNA_L-digitata_M_contig101104.1.1 vs. uniprot
Match: A0A848W7N2_9PROT (ABC transporter substrate-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W7N2_9PROT)

HSP 1 Score: 215 bits (548), Expect = 1.450e-68
Identity = 101/155 (65.16%), Postives = 126/155 (81.29%), Query Frame = 1
Query:   13 TTEQGRAEFRRLFRDGFAVNGIARFVAGRYWRKASDADRAEYLKLFEDVIVNTWADRFSQYSGQKFEVRGATDATPEKSAEDVALVESLFFTSPTSPVRLEWRVASKGDLFKIVDVKLEGISMATTQRDEFNSVVSKNGRSLEALIEELRRRRDG 477
            T E  R EFR LFR+GFA+NGIARFV GRYWR AS+ADR EY+ LFEDVIVNTWADRFS+YSG+KFEV+ A +A     AE+VA+V SLFF+ P +PVR++WRVAS+GD++KI DV +EGISMA TQRDEF+SV+  N   + AL++ LR++RDG
Sbjct:   54 TPEMRRQEFRGLFREGFAINGIARFVLGRYWRGASEADRTEYMALFEDVIVNTWADRFSEYSGEKFEVQQAVNAPSAHKAENVAIVRSLFFSDPQTPVRIDWRVASRGDIYKITDVSVEGISMANTQRDEFSSVIRSNSGEISALLDILRKKRDG 208          
BLAST of mRNA_L-digitata_M_contig101104.1.1 vs. uniprot
Match: A0A2E7PN01_9PROT (Toluene tolerance protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PN01_9PROT)

HSP 1 Score: 214 bits (544), Expect = 5.330e-68
Identity = 107/159 (67.30%), Postives = 125/159 (78.62%), Query Frame = 1
Query:    1 DASLTTEQGRAEFRRLFRDGFAVNGIARFVAGRYWRKASDADRAEYLKLFEDVIVNTWADRFSQYSGQKFEVRGATDATPEKSAEDVALVESLFFTSPTSPVRLEWRVASKGDLFKIVDVKLEGISMATTQRDEFNSVVSKNGRSLEALIEELRRRRDG 477
            +  +++E+ R +FR LFR+GFAV+GIARF  GRYWR AS  +R EYL LFEDVIVNTWADRFSQYSGQKFEV  A D  P    E+VALV S FFTSPTSPV +EWRVAS+GD+ KIVDVKLEGISMA TQRD+FNS +  NGR + A++E LR  RDG
Sbjct:   48 NTEISSEERRDKFRNLFREGFAVDGIARFALGRYWRGASKEERKEYLFLFEDVIVNTWADRFSQYSGQKFEVLDAVDE-PSSGPENVALVLSQFFTSPTSPVIIEWRVASQGDIIKIVDVKLEGISMANTQRDDFNSYIRNNGRKVSAILERLRIMRDG 205          
BLAST of mRNA_L-digitata_M_contig101104.1.1 vs. uniprot
Match: A0A2E8XTM8_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XTM8_9PROT)

HSP 1 Score: 203 bits (516), Expect = 1.120e-63
Identity = 101/157 (64.33%), Postives = 125/157 (79.62%), Query Frame = 1
Query:   10 LTTEQGRAEFRRLFRDGFAVNGIARFVAGRYWRKASDADRAEYLKLFEDVIVNTWADR-FSQYSGQKFEVRGATDATPEKSAEDVALVESLFFTSPTSPVRLEWRVASKGDLFKIVDVKLEGISMATTQRDEFNSVVSKNGRSLEALIEELRRRRDG 477
             TTE+ R +F+ LFR+GFAV+GIARFVAGRYWR+AS ++R EYL LFEDV+VN W+DR FSQY+GQ+F++ GA D TP  S E VA+VES   T+P + V++EWRVAS G+L KIVDVK+EG S+A TQ+DEF    SKNGR   A+IEELRRRRDG
Sbjct:   54 FTTEEQRLKFQELFREGFAVDGIARFVAGRYWRRASKSEREEYLVLFEDVVVNIWSDRLFSQYNGQQFDILGARDDTPANSQELVAVVESRIQTTPHTSVKVEWRVASLGELTKIVDVKVEGRSLAKTQQDEFTGFASKNGRRFSAIIEELRRRRDG 210          
BLAST of mRNA_L-digitata_M_contig101104.1.1 vs. uniprot
Match: A0A848WEV4_9PROT (ABC transporter substrate-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848WEV4_9PROT)

HSP 1 Score: 194 bits (493), Expect = 3.270e-60
Identity = 90/154 (58.44%), Postives = 117/154 (75.97%), Query Frame = 1
Query:   13 TTEQGRAEFRRLFRDGFAVNGIARFVAGRYWRKASDADRAEYLKLFEDVIVNTWADRFSQYSGQKFEVRGATDATPEKSAEDVALVESLFFTSPTSPVRLEWRVASKGDLFKIVDVKLEGISMATTQRDEFNSVVSKNGRSLEALIEELRRRRD 474
            T E  R +FR LFR+GFA+ GIAR+V G  W  AS+ADRAEYL LFEDVIV TWADRFS YSGQKF +    DA+   + E VA++ S+FFT P +P++++WRVAS+GD+FKI DV +EG+SMA TQRDEF+SV++ N   + AL++ LR +RD
Sbjct:   54 TAETRRVQFRDLFREGFAIKGIARYVLGSGWSSASNADRAEYLTLFEDVIVTTWADRFSDYSGQKFTIENTVDASSAGAPEHVAIIRSIFFTDPQTPIQIDWRVASRGDIFKITDVVVEGVSMANTQRDEFSSVIAGNSGEISALLDILRDKRD 207          
BLAST of mRNA_L-digitata_M_contig101104.1.1 vs. uniprot
Match: A0A2E3XGP1_9PROT (Uncharacterized protein n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A2E3XGP1_9PROT)

HSP 1 Score: 162 bits (410), Expect = 1.330e-47
Identity = 72/154 (46.75%), Postives = 109/154 (70.78%), Query Frame = 1
Query:   10 LTTEQGRAEFRRLFRDGFAVNGIARFVAGRYWRKASDADRAEYLKLFEDVIVNTWADRFSQYSGQKFEVRGATDATPEKSAEDVALVESLFFTSPTSPVRLEWRVASKGDLFKIVDVKLEGISMATTQRDEFNSVVSKNGRSLEALIEELRRRR 471
            +TT+  R +FR + R  FA++ IARF  GRYWRKAS++ R EYLKLFED+IV TWAD+FS Y G+K +V  + DA   +S   V +V S++     + + ++WRVAS+G+++K+ DV +EGIS+A T+RDEF+SV+ +N   + A ++ LR ++
Sbjct:   53 ITTDMRRKQFRDVMRQNFAIDSIARFALGRYWRKASESQRLEYLKLFEDLIVMTWADQFSTYEGEKLKVEESLDAASNQSRVKVVIVRSIWSIDKQTKIHVDWRVASQGNIYKVTDVMIEGISIARTKRDEFSSVIRRNNNEISAFLKTLREKK 206          
BLAST of mRNA_L-digitata_M_contig101104.1.1 vs. uniprot
Match: A0A2S6QKH2_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium MarineAlpha12_Bin1 TaxID=2013107 RepID=A0A2S6QKH2_9PROT)

HSP 1 Score: 160 bits (406), Expect = 5.030e-47
Identity = 76/159 (47.80%), Postives = 109/159 (68.55%), Query Frame = 1
Query:   16 TEQG------RAEFRRLFRDGFAVNGIARFVAGRYWRKASDADRAEYLKLFEDVIVNTWADRFSQYSGQKFEVRGATDATPEKSAEDVALVESLFFTSPTSPVRLEWRVASKGDLFKIVDVKLEGISMATTQRDEFNSVVSKNGRSLEALIEELRRRRD 474
            TE+G      R  FR + R+ FA+NGIA+F  GRYWR  ++  + EYL LFEDVIV TWAD+FS YSG+KFE++ A DA+    +E  A+V S+F+    S +R++WRV++  DL+K+ DV ++GISM+ T RDEF SV+  N   + AL++ LR +R+
Sbjct:   49 TEEGISNLVRRKRFRNICRESFAINGIAKFALGRYWRNTTENTKTEYLSLFEDVIVATWADKFSLYSGEKFEIQNALDASIRGRSERTAIVRSIFYLDTRSQIRVDWRVSNYEDLYKVTDVTIQGISMSKTTRDEFYSVIRGNAGDINALLKLLREKRN 207          
BLAST of mRNA_L-digitata_M_contig101104.1.1 vs. uniprot
Match: A0A2D6T152_9PROT (Toluene tolerance protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6T152_9PROT)

HSP 1 Score: 141 bits (356), Expect = 2.200e-39
Identity = 75/155 (48.39%), Postives = 98/155 (63.23%), Query Frame = 1
Query:    1 DASLTTEQGRAEFRRLFRDGFAVNGIARFVAGRYWRKASDADRAEYLKLFEDVIVNTWADRFSQYSGQKFEV-RGATDATPEKSAEDVALVESLFFTSPTSPVRLEWRVASKGDLFKIVDVKLEGISMATTQRDEFNSVVSKNGRSLEALIEELR 462
            D  L  E+   EFRRLF +GF V  I+RF  GRYWR+AS   R EY +LF D IVNT++DR  QYSG+K  V +   DA  ++      +V S        PVRL+WR+  +   FKIVDV +EG+SMA TQRD F+SV+ + G  +E+L+EELR
Sbjct:   46 DKELPAERRLEEFRRLFIEGFDVRTISRFALGRYWRRASKNQRQEYGRLFSDYIVNTYSDRLGQYSGEKIVVGKTRNDAKRDR------IVSSKIVRPKGKPVRLDWRLRQRDQGFKIVDVVIEGVSMAITQRDAFSSVIRRGGGKVESLLEELR 194          
BLAST of mRNA_L-digitata_M_contig101104.1.1 vs. uniprot
Match: B6IP24_RHOCS (Toluene tolerance transporter, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) TaxID=414684 RepID=B6IP24_RHOCS)

HSP 1 Score: 141 bits (355), Expect = 3.210e-39
Identity = 72/157 (45.86%), Postives = 101/157 (64.33%), Query Frame = 1
Query:    1 DASLTTEQGRAEFRRLFRDGFAVNGIARFVAGRYWRKASDADRAEYLKLFEDVIVNTWADRFSQYSGQKFEVRGA-TDATPEKSAEDVALVESLFFTSPTSPVRLEWRVASKGDLFKIVDVKLEGISMATTQRDEFNSVVSKNGRSLEALIEELRRR 468
            D  +T EQ   EFRRL  + F V  I RFV GRYW  AS+A R EY+KLFE +IV  +A RF+QY+G+ FEV  +  D T +      A+V S        PV+++WRV ++   ++IVDV +EG+SM+ TQR EF SV+  NG +++AL++ LR+R
Sbjct:   59 DPKVTDEQAVEEFRRLLNENFDVTTIGRFVLGRYWNTASEAQRQEYMKLFERMIVEVYAQRFNQYAGETFEVTASRADGTKD------AIVSSQVLRPNGPPVKVDWRVRARDGGYRIVDVVVEGVSMSVTQRSEFASVIESNGGNIDALLDALRKR 209          
BLAST of mRNA_L-digitata_M_contig101104.1.1 vs. uniprot
Match: A0A2S6TX69_9PROT (Putative phospholipid-binding protein MlaC n=1 Tax=Alphaproteobacteria bacterium MarineAlpha3_Bin3 TaxID=2013069 RepID=A0A2S6TX69_9PROT)

HSP 1 Score: 140 bits (352), Expect = 8.360e-39
Identity = 75/162 (46.30%), Postives = 105/162 (64.81%), Query Frame = 1
Query:    1 DASLTTEQGRAEFRRLFRDGFAVNGIARFVAGRYWRKASDADRAEYLKLFEDVIVNTWADRFSQYSGQKF-----EVRGATDATPEKSAEDVALVESLFF-TSPTSPVRLEWRVASKGDLFKIVDVKLEGISMATTQRDEFNSVVSKNGRSLEALIEELRRR 468
            D S T    R  FRRL  + FA+ GIA+FV GR+WRKA+++++ EYL+LFED++V+T+ADRF++YSG+K      EVRG  DA          LV ++        P+++ WRV  K  ++KIVD+ +EGISM  TQ+ EF S + KNG SL  L+ ELR+R
Sbjct:   59 DISKTERADR--FRRLMNENFAIKGIAKFVIGRHWRKATESEKKEYLQLFEDLLVDTYADRFAKYSGEKLVVNKSEVRGKGDA----------LVHTIMIRVDGAKPLKVTWRVRGKKGIYKIVDIMVEGISMVVTQKSEFASFIQKNGGSLGPLLIELRKR 208          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101104.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7I5V5_9PROT8.000e-7068.55Toluene tolerance protein n=2 Tax=Alphaproteobacte... [more]
A0A848W7N2_9PROT1.450e-6865.16ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A2E7PN01_9PROT5.330e-6867.30Toluene tolerance protein n=1 Tax=Rhodospirillacea... [more]
A0A2E8XTM8_9PROT1.120e-6364.33Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A848WEV4_9PROT3.270e-6058.44ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A2E3XGP1_9PROT1.330e-4746.75Uncharacterized protein n=2 Tax=Rhodospirillales T... [more]
A0A2S6QKH2_9PROT5.030e-4747.80Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2D6T152_9PROT2.200e-3948.39Toluene tolerance protein n=1 Tax=Rhodospirillacea... [more]
B6IP24_RHOCS3.210e-3945.86Toluene tolerance transporter, putative n=1 Tax=Rh... [more]
A0A2S6TX69_9PROT8.360e-3946.30Putative phospholipid-binding protein MlaC n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101104contigL-digitata_M_contig101104:3..482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog414684.RC1_2053
PFAMsMlaC
Model size480
Max annot lvl204441|Rhodospirillales
KEGG koko:K07323
KEGG TC3.A.1.27.3
KEGG Pathwayko02010,map02010
KEGG ModuleM00210
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.26e-40
EggNOG OGsCOG2854@1|root,COG2854@2|Bacteria,1NKFA@1224|Proteobacteria,2UAPV@28211|Alphaproteobacteria,2JSSQ@204441|Rhodospirillales
DescriptionCOG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component
Cds size480
COG categoryQ
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.3834796-CDS-L-digitata_M_contig101104:2..4821682406614.3834796-CDS-L-digitata_M_contig101104:2..482Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101104 3..482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101104.1.1prot_L-digitata_M_contig101104.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101104 3..482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101104.1.1

>prot_L-digitata_M_contig101104.1.1 ID=prot_L-digitata_M_contig101104.1.1|Name=mRNA_L-digitata_M_contig101104.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=160bp
DASLTTEQGRAEFRRLFRDGFAVNGIARFVAGRYWRKASDADRAEYLKLF
EDVIVNTWADRFSQYSGQKFEVRGATDATPEKSAEDVALVESLFFTSPTS
PVRLEWRVASKGDLFKIVDVKLEGISMATTQRDEFNSVVSKNGRSLEALI
EELRRRRDG*
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mRNA from alignment at L-digitata_M_contig101104:3..482+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101104.1.1 ID=mRNA_L-digitata_M_contig101104.1.1|Name=mRNA_L-digitata_M_contig101104.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=480bp|location=Sequence derived from alignment at L-digitata_M_contig101104:3..482+ (Laminaria digitata LdigPH10_18mv male)
GATGCATCGCTAACAACCGAGCAGGGGCGCGCGGAGTTCCGCAGACTGTT TCGTGATGGCTTTGCCGTGAACGGAATCGCCCGCTTCGTTGCAGGACGCT ACTGGCGCAAGGCCAGCGATGCCGACCGCGCCGAGTACCTCAAACTCTTT GAAGACGTGATTGTGAACACCTGGGCAGATCGTTTCTCCCAGTATTCCGG TCAAAAATTTGAAGTGCGGGGGGCCACAGACGCAACTCCGGAAAAATCTG CCGAAGACGTCGCGCTCGTCGAAAGCCTTTTCTTTACAAGCCCGACATCG CCAGTTCGTCTGGAATGGCGGGTTGCCAGCAAAGGCGATCTGTTCAAGAT CGTTGACGTCAAGCTGGAAGGCATCAGCATGGCAACGACCCAGCGCGACG AATTCAACTCTGTTGTCAGCAAAAACGGCCGCTCGCTTGAAGCGCTGATC GAGGAATTGCGTCGCCGCCGCGACGGCTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig101104:3..482+

>mRNA_L-digitata_M_contig101104.1.1 ID=mRNA_L-digitata_M_contig101104.1.1|Name=mRNA_L-digitata_M_contig101104.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=480bp|location=Sequence derived from alignment at L-digitata_M_contig101104:3..482+ (Laminaria digitata LdigPH10_18mv male)
GATGCATCGCTAACAACCGAGCAGGGGCGCGCGGAGTTCCGCAGACTGTT
TCGTGATGGCTTTGCCGTGAACGGAATCGCCCGCTTCGTTGCAGGACGCT
ACTGGCGCAAGGCCAGCGATGCCGACCGCGCCGAGTACCTCAAACTCTTT
GAAGACGTGATTGTGAACACCTGGGCAGATCGTTTCTCCCAGTATTCCGG
TCAAAAATTTGAAGTGCGGGGGGCCACAGACGCAACTCCGGAAAAATCTG
CCGAAGACGTCGCGCTCGTCGAAAGCCTTTTCTTTACAAGCCCGACATCG
CCAGTTCGTCTGGAATGGCGGGTTGCCAGCAAAGGCGATCTGTTCAAGAT
CGTTGACGTCAAGCTGGAAGGCATCAGCATGGCAACGACCCAGCGCGACG
AATTCAACTCTGTTGTCAGCAAAAACGGCCGCTCGCTTGAAGCGCTGATC
GAGGAATTGCGTCGCCGCCGCGACGGCTGA
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