mRNA_L-digitata_M_contig101093.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101093.1.1
Unique NamemRNA_L-digitata_M_contig101093.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101093.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101093contigL-digitata_M_contig101093:122..651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size530
Hectar predicted targeting categoryother localisation
Exons1
Cds size360
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406613.968194-UTR-L-digitata_M_contig101093:121..1731682406613.968194-UTR-L-digitata_M_contig101093:121..173Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig101093 122..173 -
1682406613.9869714-UTR-L-digitata_M_contig101093:533..6511682406613.9869714-UTR-L-digitata_M_contig101093:533..651Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig101093 534..651 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406613.978056-CDS-L-digitata_M_contig101093:173..5331682406613.978056-CDS-L-digitata_M_contig101093:173..533Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101093 174..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101093.1.1prot_L-digitata_M_contig101093.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101093 174..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101093.1.1

>prot_L-digitata_M_contig101093.1.1 ID=prot_L-digitata_M_contig101093.1.1|Name=mRNA_L-digitata_M_contig101093.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=120bp
MILCSVLLHCAEPETFYCSAEPETEGLLFVALCRTRNRRLAFICVCAEPE
TEGLHFVVFAQSQKQKACILLYCAEPESEKTFQANPWHCIYYYYSYCHCG
LHPQFDYSSRWDLCCCRLE*
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mRNA from alignment at L-digitata_M_contig101093:122..651-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101093.1.1 ID=mRNA_L-digitata_M_contig101093.1.1|Name=mRNA_L-digitata_M_contig101093.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=530bp|location=Sequence derived from alignment at L-digitata_M_contig101093:122..651- (Laminaria digitata LdigPH10_18mv male)
GCGTGGGTGTTAGGTTTTTGGTTTGGTGTCCCATAATCCATGAGCGCTTT
AGATTGCTCGTTGCCGTTGGGATGGTCGGGGGTTTTGCAGTCTTTGATGG
CTTTTTTTAGGAACGGGGATGATACTCTGTAGCGTTTTGTTGCATTGTGC
AGAGCCAGAAACATTTTATTGCAGTGCAGAGCCAGAAACAGAAGGCTTGC
TTTTTGTTGCATTGTGCAGAACCAGAAACAGAAGGCTTGCATTTATTTGT
GTTTGTGCAGAGCCAGAAACAGAAGGCTTGCATTTTGTTGTATTTGCGCA
GAGCCAGAAGCAGAAGGCTTGCATTTTGTTGTATTGTGCAGAGCCAGAAT
CAGAAAAGACTTTTCAAGCTAACCCGTGGCACTGTATATACTATTACTAC
TCGTACTGCCACTGCGGTTTGCATCCTCAATTCGATTATAGTAGCAGGTG
GGACCTGTGCTGCTGCCGCCTCGAATAGCGGATGCGCACAAGTTTACCCC
CTGAGCTAGAATGGAAAACCCGGAAAGGCC
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Coding sequence (CDS) from alignment at L-digitata_M_contig101093:122..651-

>mRNA_L-digitata_M_contig101093.1.1 ID=mRNA_L-digitata_M_contig101093.1.1|Name=mRNA_L-digitata_M_contig101093.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=360bp|location=Sequence derived from alignment at L-digitata_M_contig101093:122..651- (Laminaria digitata LdigPH10_18mv male)
ATGATACTCTGTAGCGTTTTGTTGCATTGTGCAGAGCCAGAAACATTTTA
TTGCAGTGCAGAGCCAGAAACAGAAGGCTTGCTTTTTGTTGCATTGTGCA
GAACCAGAAACAGAAGGCTTGCATTTATTTGTGTTTGTGCAGAGCCAGAA
ACAGAAGGCTTGCATTTTGTTGTATTTGCGCAGAGCCAGAAGCAGAAGGC
TTGCATTTTGTTGTATTGTGCAGAGCCAGAATCAGAAAAGACTTTTCAAG
CTAACCCGTGGCACTGTATATACTATTACTACTCGTACTGCCACTGCGGT
TTGCATCCTCAATTCGATTATAGTAGCAGGTGGGACCTGTGCTGCTGCCG
CCTCGAATAG
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