mRNA_L-digitata_M_contig101056.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A2E7I691_9PROT (Protein-export membrane protein SecF n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7I691_9PROT) HSP 1 Score: 385 bits (990), Expect = 1.400e-131 Identity = 200/247 (80.97%), Postives = 221/247 (89.47%), Query Frame = 1
Query: 190 KLNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
+L+ VP NT +FVG RR +YP SALL++ SI F QGLNFGIDF+GG L+E+KTEGPADV +LR T+G L LGEVQVQEFGAPDD+LIRVQQQDG+E EQ I +K ALG+QVAEYRRTEFVGPTVGAELI SAIWAV+LAIGAILIYIWFRFEWQFGVGA+IALTHDV+TTIG+FA+TQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKK+DM ALLNLAANRTLSRTFMTSVTT
Sbjct: 2 RLSIVPANTNFDFVGRRRLAYPLSALLLILSIGAFFYQGLNFGIDFRGGILLEIKTEGPADVVQLRRTVGALELGEVQVQEFGAPDDVLIRVQQQDGAEAEQLLAINTLKNALGNQVAEYRRTEFVGPTVGAELISSAIWAVLLAIGAILIYIWFRFEWQFGVGAIIALTHDVLTTIGVFAITQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKLDMSALLNLAANRTLSRTFMTSVTT 248
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A2E7PKA7_9PROT (Protein-export membrane protein SecF n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PKA7_9PROT) HSP 1 Score: 383 bits (984), Expect = 1.140e-130 Identity = 199/247 (80.57%), Postives = 218/247 (88.26%), Query Frame = 1
Query: 190 KLNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
+L+ VP NT +FVG RR +YP SA+L++ S+ F GLNFGIDF+GG LIE+KTEGPADV++LR T+G LGLGEVQVQEFGAPDDILIRVQQQDG E EQ I +K ALG +V EYRRTEFVGPTVGAELI SAIWAV+LAIGAILIYIWFRFEWQFGVGAVIALTHDV+TTIGLFA+TQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKK+DM ALLNLA NRTLSRTFMTSVTT
Sbjct: 2 RLSIVPANTSFDFVGRRRLAYPLSAMLIILSLGTFFTHGLNFGIDFRGGILIEIKTEGPADVADLRQTVGALGLGEVQVQEFGAPDDILIRVQQQDGEEREQLQAINTLKDALGGKVVEYRRTEFVGPTVGAELISSAIWAVLLAIGAILIYIWFRFEWQFGVGAVIALTHDVLTTIGLFAITQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKLDMPALLNLAVNRTLSRTFMTSVTT 248
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A2E8XN36_9PROT (Protein-export membrane protein SecF n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XN36_9PROT) HSP 1 Score: 373 bits (957), Expect = 8.590e-127 Identity = 194/231 (83.98%), Postives = 213/231 (92.21%), Query Frame = 1
Query: 238 RRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
R+F+YP S L++ ++ FLVQGLNFGIDF+GG LIE+KTEGPADV++LR+T+GGL LGEVQVQEFGAPDD+LIRVQQQDG+E EQ A I IK ALG V EYRRTEFVGPTVGAELI+SAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDV+TTIGLFA+TQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKK+DM +LLNLAANRTLSRTFMTSVTT
Sbjct: 2 RKFAYPLSIALIIFAVGSFLVQGLNFGIDFRGGILIEIKTEGPADVAQLRSTVGGLNLGEVQVQEFGAPDDVLIRVQQQDGAEKEQLAAIETIKAALGDIVTEYRRTEFVGPTVGAELIQSAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVLTTIGLFAITQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKLDMPSLLNLAANRTLSRTFMTSVTT 232
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A848WET6_9PROT (Protein-export membrane protein SecF n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848WET6_9PROT) HSP 1 Score: 349 bits (895), Expect = 4.570e-117 Identity = 185/246 (75.20%), Postives = 211/246 (85.77%), Query Frame = 1
Query: 193 LNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
L VP T ++FVG R+ ++ FS LL++AS+ FL QGLN GIDFKGG LIEV+TEGPA++ ELR TLGGLGLGEVQVQ FGAP+D+LIRVQQQ+G E Q A I IK A+G EYRRTE VGPTVGAELI++AI AV LA+GAILIYIWFRFEWQFGVGAV+AL+HDVI+TIGLFA+TQLEFNLATVAA+LTIAGYSINDTVVIYDRVREELRRYKK+ + LLNLAANRTLSRTF+TSVTT
Sbjct: 4 LTVVPAVTTIDFVGKRKVAFTFSILLILASVGAFLTQGLNLGIDFKGGVLIEVETEGPANIQELRQTLGGLGLGEVQVQAFGAPNDVLIRVQQQEGGEKAQQAAITAIKDAIGDTAIEYRRTESVGPTVGAELIKAAILAVSLALGAILIYIWFRFEWQFGVGAVMALSHDVISTIGLFAITQLEFNLATVAAVLTIAGYSINDTVVIYDRVREELRRYKKLAIPDLLNLAANRTLSRTFLTSVTT 249
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A2E3XG44_9PROT (Protein-export membrane protein SecF n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E3XG44_9PROT) HSP 1 Score: 338 bits (867), Expect = 5.220e-113 Identity = 176/246 (71.54%), Postives = 207/246 (84.15%), Query Frame = 1
Query: 193 LNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
L VP +TK++FV R F++ FS LL++ SI+ FLVQGLN GIDF+GG LIEV+T GPAD+ +LR+ LG LGLGE+QVQEFG P+D+LIRVQQQDG E Q + IK ALG EYRRTE VGPTVGAELI +AI AV LA+GAILIYIW RFEWQFGVGA+IAL+HDV+TT+GLFA+TQLEFNLATVAA+LTIAGYSINDTVVIYDRVREELRRYKK+ + LLNL+ N+TLSRTF+TS+TT
Sbjct: 4 LRIVPSDTKIDFVSKRPFAFGFSILLILISISTFLVQGLNLGIDFRGGVLIEVETNGPADIEKLRDVLGNLGLGEIQVQEFGNPNDVLIRVQQQDGGEKAQQDAVVLIKEALGDYAKEYRRTESVGPTVGAELIRAAILAVSLALGAILIYIWIRFEWQFGVGAIIALSHDVLTTVGLFAVTQLEFNLATVAAVLTIAGYSINDTVVIYDRVREELRRYKKLSIPDLLNLSVNKTLSRTFLTSMTT 249
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A7W2BM09_9HYPH (Multifunctional fusion protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7W2BM09_9HYPH) HSP 1 Score: 339 bits (870), Expect = 7.890e-107 Identity = 178/311 (57.23%), Postives = 232/311 (74.60%), Query Frame = 1
Query: 1 TTLIAAILLFQFGSGPIKGFAVTLSIGILTSMFTALMLTRLFVVVWLRRTRPKTLAI*GRIMFKLNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKT-EGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
TT IAA +LF GSGP+KGFAVTL IGI ++F +R V W+ R RPKTL++ + L+ VP T + F+ RRFS+P SA+LV S+ALF V GLN GIDFKGG ++E+KT +GPAD+ +R LG LGLG+++VQEFG+PDDILIRVQQQ+G + Q + +++ ALG +YRR E VGP V EL ++ AV++A+ A+LIYIWFRFEW F VGAVIA HDV+ TIGLFAL QL+FNL+T+AA+LTI GYS+NDTVV+YDR+RE LR+YK+M + ++L+L+ N TLSRT +TSVTT
Sbjct: 490 TTFIAAAILFYLGSGPVKGFAVTLVIGIFATVFCGFTFSRYMVAQWVLRKRPKTLSL----RWILDMVPDGTTIKFMRLRRFSFPISAILVAGSLALFGVNGLNLGIDFKGGTIVEIKTTDGPADIGAIRGKLGALGLGDIEVQEFGSPDDILIRVQQQEGGDQAQQEAVRKVRTALGEANIDYRRIEVVGPRVSGELTQAGTIAVLVALIAVLIYIWFRFEWHFAVGAVIATVHDVVITIGLFALLQLDFNLSTIAAVLTIVGYSLNDTVVVYDRIRENLRKYKRMSIASVLDLSINETLSRTALTSVTT 796
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A2S6QH78_9PROT (Protein-export membrane protein SecF n=1 Tax=Alphaproteobacteria bacterium MarineAlpha12_Bin1 TaxID=2013107 RepID=A0A2S6QH78_9PROT) HSP 1 Score: 322 bits (824), Expect = 1.620e-106 Identity = 170/246 (69.11%), Postives = 200/246 (81.30%), Query Frame = 1
Query: 193 LNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
L +P +T +NF+ R+ ++ FS L++ S+ ++ QGLN GIDF+GG LIE+KT+ A++ +LR LG LGLGEVQVQ+FG P D+LIRVQQQDG E Q I+ +K +L V EYRRTE VGPTVGAELI +A+ AV LA+ AILIYIWFRFEWQFGVGAVIAL+HDVI+TIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKK+ M L NLA NRTLSRTF+TSVTT
Sbjct: 4 LTIIPPDTSINFISKRKVAFVFSIFLILVSLGAYIYQGLNLGIDFRGGILIEIKTQKIANIEQLRLKLGALGLGEVQVQKFGDPRDVLIRVQQQDGGEDAQQKAISIVKNSLDGLVQEYRRTESVGPTVGAELIRAAVLAVSLALAAILIYIWFRFEWQFGVGAVIALSHDVISTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKLAMPDLFNLALNRTLSRTFLTSVTT 249
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A2E5PK42_9PROT (Protein-export membrane protein SecF n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PK42_9PROT) HSP 1 Score: 322 bits (824), Expect = 1.730e-106 Identity = 168/246 (68.29%), Postives = 199/246 (80.89%), Query Frame = 1
Query: 193 LNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
L VP+ T + F+ R ++ FSALL+V S LF QGLN GIDF GG LIEVKT+GPA+++ELR+ L LGLGEV +QEFGAPDD+LIR+Q+Q+ E Q A I ++K +L +V EYRRTEFVGP VGAEL E+A WAV+ AI AIL+YIWFRFEWQFG+GAVIAL HDVITTIGLFAL QLEFNLATVAAILTIAGYSINDTVV+YDRVRE +RRYKKM + L N++ N+TLSRT +TSVTT
Sbjct: 4 LKLVPEKTNIQFINKRLIAFCFSALLLVGSAGLFFGQGLNLGIDFLGGILIEVKTDGPANLAELRSDLNSLGLGEVSLQEFGAPDDVLIRIQKQERGEKAQQAAIEKVKTSLSGRVIEYRRTEFVGPVVGAELREAATWAVLAAIAAILLYIWFRFEWQFGIGAVIALVHDVITTIGLFALLQLEFNLATVAAILTIAGYSINDTVVVYDRVRENMRRYKKMAYEELFNISINQTLSRTVVTSVTT 249
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A437QXS3_9PROT (Protein-export membrane protein SecF n=1 Tax=Hwanghaeella grinnelliae TaxID=2500179 RepID=A0A437QXS3_9PROT) HSP 1 Score: 317 bits (812), Expect = 1.350e-104 Identity = 165/247 (66.80%), Postives = 198/247 (80.16%), Query Frame = 1
Query: 190 KLNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
+L VP NTK++F+GY + + FS +LVV S+ LF V+GLN GIDF GG ++EVKTEGPAD+ R+ LG LGLG+V +QEFG PD +LIRVQ+Q G + Q A I I LG +V EYRR E VGPTVGAEL E+A+ AV+ AIGAIL+YIWFRFEWQ+GVGAVIAL+HDVI TIGLFAL QLEFNL+TVAAILTIAGYSINDTVV+YDRVR++LRR+KK+ + L NLA N+TLSRT MTS TT
Sbjct: 2 RLKIVPDNTKIDFIGYHKLAIGFSIILVVVSLGLFAVRGLNLGIDFLGGIMLEVKTEGPADIGTFRSDLGSLGLGDVGIQEFGEPDVLLIRVQRQPGGDEAQQAAIKTITETLGDRVVEYRRNEVVGPTVGAELQEAALIAVLAAIGAILVYIWFRFEWQYGVGAVIALSHDVIATIGLFALFQLEFNLSTVAAILTIAGYSINDTVVVYDRVRDKLRRFKKLPFEELFNLAINKTLSRTVMTSFTT 248
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A3D9HQ52_9PROT (Protein-export membrane protein SecF n=1 Tax=Aestuariispira insulae TaxID=1461337 RepID=A0A3D9HQ52_9PROT) HSP 1 Score: 317 bits (811), Expect = 1.570e-104 Identity = 161/246 (65.45%), Postives = 199/246 (80.89%), Query Frame = 1
Query: 193 LNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
L +P K++F G R ++ FS LLV+ S+ LF +GLN GIDF GG IE++TEGPAD+S +R+T+GGL LG+V +QEFG D++LIR+Q+Q G E A I ++K ALG V EYRRTE VGPTVGAEL E+A+WAVV A+GAILIYIWFRFEWQFGV AVIALTHDVITTIGLF+L QL+FNLAT+AA+LTIAGYSINDTVV++DRVRE +R+YKKM++ L NL+ N+TLSRT +TSVTT
Sbjct: 4 LKLIPDTPKIDFTGKRVIAFAFSVLLVLGSLGLFFGKGLNLGIDFLGGIQIEIQTEGPADISAIRSTVGGLDLGDVSIQEFGETDNVLIRIQEQAGGEESVQAAIEKVKAALGDTVKEYRRTESVGPTVGAELQEAALWAVVSAVGAILIYIWFRFEWQFGVAAVIALTHDVITTIGLFSLLQLDFNLATIAALLTIAGYSINDTVVVFDRVRENMRKYKKMELAELFNLSVNQTLSRTLITSVTT 249 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig101056.1.1 >prot_L-digitata_M_contig101056.1.1 ID=prot_L-digitata_M_contig101056.1.1|Name=mRNA_L-digitata_M_contig101056.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=249bp MFKLNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGback to top mRNA from alignment at L-digitata_M_contig101056:3..932+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig101056.1.1 ID=mRNA_L-digitata_M_contig101056.1.1|Name=mRNA_L-digitata_M_contig101056.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=930bp|location=Sequence derived from alignment at L-digitata_M_contig101056:3..932+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig101056:3..932+ >mRNA_L-digitata_M_contig101056.1.1 ID=mRNA_L-digitata_M_contig101056.1.1|Name=mRNA_L-digitata_M_contig101056.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=747bp|location=Sequence derived from alignment at L-digitata_M_contig101056:3..932+ (Laminaria digitata LdigPH10_18mv male)back to top |