mRNA_L-digitata_M_contig101056.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101056.1.1
Unique NamemRNA_L-digitata_M_contig101056.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A2E7I691_9PROT (Protein-export membrane protein SecF n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7I691_9PROT)

HSP 1 Score: 385 bits (990), Expect = 1.400e-131
Identity = 200/247 (80.97%), Postives = 221/247 (89.47%), Query Frame = 1
Query:  190 KLNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
            +L+ VP NT  +FVG RR +YP SALL++ SI  F  QGLNFGIDF+GG L+E+KTEGPADV +LR T+G L LGEVQVQEFGAPDD+LIRVQQQDG+E EQ   I  +K ALG+QVAEYRRTEFVGPTVGAELI SAIWAV+LAIGAILIYIWFRFEWQFGVGA+IALTHDV+TTIG+FA+TQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKK+DM ALLNLAANRTLSRTFMTSVTT
Sbjct:    2 RLSIVPANTNFDFVGRRRLAYPLSALLLILSIGAFFYQGLNFGIDFRGGILLEIKTEGPADVVQLRRTVGALELGEVQVQEFGAPDDVLIRVQQQDGAEAEQLLAINTLKNALGNQVAEYRRTEFVGPTVGAELISSAIWAVLLAIGAILIYIWFRFEWQFGVGAIIALTHDVLTTIGVFAITQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKLDMSALLNLAANRTLSRTFMTSVTT 248          
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A2E7PKA7_9PROT (Protein-export membrane protein SecF n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PKA7_9PROT)

HSP 1 Score: 383 bits (984), Expect = 1.140e-130
Identity = 199/247 (80.57%), Postives = 218/247 (88.26%), Query Frame = 1
Query:  190 KLNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
            +L+ VP NT  +FVG RR +YP SA+L++ S+  F   GLNFGIDF+GG LIE+KTEGPADV++LR T+G LGLGEVQVQEFGAPDDILIRVQQQDG E EQ   I  +K ALG +V EYRRTEFVGPTVGAELI SAIWAV+LAIGAILIYIWFRFEWQFGVGAVIALTHDV+TTIGLFA+TQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKK+DM ALLNLA NRTLSRTFMTSVTT
Sbjct:    2 RLSIVPANTSFDFVGRRRLAYPLSAMLIILSLGTFFTHGLNFGIDFRGGILIEIKTEGPADVADLRQTVGALGLGEVQVQEFGAPDDILIRVQQQDGEEREQLQAINTLKDALGGKVVEYRRTEFVGPTVGAELISSAIWAVLLAIGAILIYIWFRFEWQFGVGAVIALTHDVLTTIGLFAITQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKLDMPALLNLAVNRTLSRTFMTSVTT 248          
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A2E8XN36_9PROT (Protein-export membrane protein SecF n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XN36_9PROT)

HSP 1 Score: 373 bits (957), Expect = 8.590e-127
Identity = 194/231 (83.98%), Postives = 213/231 (92.21%), Query Frame = 1
Query:  238 RRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
            R+F+YP S  L++ ++  FLVQGLNFGIDF+GG LIE+KTEGPADV++LR+T+GGL LGEVQVQEFGAPDD+LIRVQQQDG+E EQ A I  IK ALG  V EYRRTEFVGPTVGAELI+SAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDV+TTIGLFA+TQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKK+DM +LLNLAANRTLSRTFMTSVTT
Sbjct:    2 RKFAYPLSIALIIFAVGSFLVQGLNFGIDFRGGILIEIKTEGPADVAQLRSTVGGLNLGEVQVQEFGAPDDVLIRVQQQDGAEKEQLAAIETIKAALGDIVTEYRRTEFVGPTVGAELIQSAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVLTTIGLFAITQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKLDMPSLLNLAANRTLSRTFMTSVTT 232          
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A848WET6_9PROT (Protein-export membrane protein SecF n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848WET6_9PROT)

HSP 1 Score: 349 bits (895), Expect = 4.570e-117
Identity = 185/246 (75.20%), Postives = 211/246 (85.77%), Query Frame = 1
Query:  193 LNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
            L  VP  T ++FVG R+ ++ FS LL++AS+  FL QGLN GIDFKGG LIEV+TEGPA++ ELR TLGGLGLGEVQVQ FGAP+D+LIRVQQQ+G E  Q A I  IK A+G    EYRRTE VGPTVGAELI++AI AV LA+GAILIYIWFRFEWQFGVGAV+AL+HDVI+TIGLFA+TQLEFNLATVAA+LTIAGYSINDTVVIYDRVREELRRYKK+ +  LLNLAANRTLSRTF+TSVTT
Sbjct:    4 LTVVPAVTTIDFVGKRKVAFTFSILLILASVGAFLTQGLNLGIDFKGGVLIEVETEGPANIQELRQTLGGLGLGEVQVQAFGAPNDVLIRVQQQEGGEKAQQAAITAIKDAIGDTAIEYRRTESVGPTVGAELIKAAILAVSLALGAILIYIWFRFEWQFGVGAVMALSHDVISTIGLFAITQLEFNLATVAAVLTIAGYSINDTVVIYDRVREELRRYKKLAIPDLLNLAANRTLSRTFLTSVTT 249          
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A2E3XG44_9PROT (Protein-export membrane protein SecF n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E3XG44_9PROT)

HSP 1 Score: 338 bits (867), Expect = 5.220e-113
Identity = 176/246 (71.54%), Postives = 207/246 (84.15%), Query Frame = 1
Query:  193 LNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
            L  VP +TK++FV  R F++ FS LL++ SI+ FLVQGLN GIDF+GG LIEV+T GPAD+ +LR+ LG LGLGE+QVQEFG P+D+LIRVQQQDG E  Q   +  IK ALG    EYRRTE VGPTVGAELI +AI AV LA+GAILIYIW RFEWQFGVGA+IAL+HDV+TT+GLFA+TQLEFNLATVAA+LTIAGYSINDTVVIYDRVREELRRYKK+ +  LLNL+ N+TLSRTF+TS+TT
Sbjct:    4 LRIVPSDTKIDFVSKRPFAFGFSILLILISISTFLVQGLNLGIDFRGGVLIEVETNGPADIEKLRDVLGNLGLGEIQVQEFGNPNDVLIRVQQQDGGEKAQQDAVVLIKEALGDYAKEYRRTESVGPTVGAELIRAAILAVSLALGAILIYIWIRFEWQFGVGAIIALSHDVLTTVGLFAVTQLEFNLATVAAVLTIAGYSINDTVVIYDRVREELRRYKKLSIPDLLNLSVNKTLSRTFLTSMTT 249          
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A7W2BM09_9HYPH (Multifunctional fusion protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7W2BM09_9HYPH)

HSP 1 Score: 339 bits (870), Expect = 7.890e-107
Identity = 178/311 (57.23%), Postives = 232/311 (74.60%), Query Frame = 1
Query:    1 TTLIAAILLFQFGSGPIKGFAVTLSIGILTSMFTALMLTRLFVVVWLRRTRPKTLAI*GRIMFKLNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKT-EGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
            TT IAA +LF  GSGP+KGFAVTL IGI  ++F     +R  V  W+ R RPKTL++     + L+ VP  T + F+  RRFS+P SA+LV  S+ALF V GLN GIDFKGG ++E+KT +GPAD+  +R  LG LGLG+++VQEFG+PDDILIRVQQQ+G +  Q   + +++ ALG    +YRR E VGP V  EL ++   AV++A+ A+LIYIWFRFEW F VGAVIA  HDV+ TIGLFAL QL+FNL+T+AA+LTI GYS+NDTVV+YDR+RE LR+YK+M + ++L+L+ N TLSRT +TSVTT
Sbjct:  490 TTFIAAAILFYLGSGPVKGFAVTLVIGIFATVFCGFTFSRYMVAQWVLRKRPKTLSL----RWILDMVPDGTTIKFMRLRRFSFPISAILVAGSLALFGVNGLNLGIDFKGGTIVEIKTTDGPADIGAIRGKLGALGLGDIEVQEFGSPDDILIRVQQQEGGDQAQQEAVRKVRTALGEANIDYRRIEVVGPRVSGELTQAGTIAVLVALIAVLIYIWFRFEWHFAVGAVIATVHDVVITIGLFALLQLDFNLSTIAAVLTIVGYSLNDTVVVYDRIRENLRKYKRMSIASVLDLSINETLSRTALTSVTT 796          
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A2S6QH78_9PROT (Protein-export membrane protein SecF n=1 Tax=Alphaproteobacteria bacterium MarineAlpha12_Bin1 TaxID=2013107 RepID=A0A2S6QH78_9PROT)

HSP 1 Score: 322 bits (824), Expect = 1.620e-106
Identity = 170/246 (69.11%), Postives = 200/246 (81.30%), Query Frame = 1
Query:  193 LNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
            L  +P +T +NF+  R+ ++ FS  L++ S+  ++ QGLN GIDF+GG LIE+KT+  A++ +LR  LG LGLGEVQVQ+FG P D+LIRVQQQDG E  Q   I+ +K +L   V EYRRTE VGPTVGAELI +A+ AV LA+ AILIYIWFRFEWQFGVGAVIAL+HDVI+TIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKK+ M  L NLA NRTLSRTF+TSVTT
Sbjct:    4 LTIIPPDTSINFISKRKVAFVFSIFLILVSLGAYIYQGLNLGIDFRGGILIEIKTQKIANIEQLRLKLGALGLGEVQVQKFGDPRDVLIRVQQQDGGEDAQQKAISIVKNSLDGLVQEYRRTESVGPTVGAELIRAAVLAVSLALAAILIYIWFRFEWQFGVGAVIALSHDVISTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKLAMPDLFNLALNRTLSRTFLTSVTT 249          
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A2E5PK42_9PROT (Protein-export membrane protein SecF n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PK42_9PROT)

HSP 1 Score: 322 bits (824), Expect = 1.730e-106
Identity = 168/246 (68.29%), Postives = 199/246 (80.89%), Query Frame = 1
Query:  193 LNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
            L  VP+ T + F+  R  ++ FSALL+V S  LF  QGLN GIDF GG LIEVKT+GPA+++ELR+ L  LGLGEV +QEFGAPDD+LIR+Q+Q+  E  Q A I ++K +L  +V EYRRTEFVGP VGAEL E+A WAV+ AI AIL+YIWFRFEWQFG+GAVIAL HDVITTIGLFAL QLEFNLATVAAILTIAGYSINDTVV+YDRVRE +RRYKKM  + L N++ N+TLSRT +TSVTT
Sbjct:    4 LKLVPEKTNIQFINKRLIAFCFSALLLVGSAGLFFGQGLNLGIDFLGGILIEVKTDGPANLAELRSDLNSLGLGEVSLQEFGAPDDVLIRIQKQERGEKAQQAAIEKVKTSLSGRVIEYRRTEFVGPVVGAELREAATWAVLAAIAAILLYIWFRFEWQFGIGAVIALVHDVITTIGLFALLQLEFNLATVAAILTIAGYSINDTVVVYDRVRENMRRYKKMAYEELFNISINQTLSRTVVTSVTT 249          
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A437QXS3_9PROT (Protein-export membrane protein SecF n=1 Tax=Hwanghaeella grinnelliae TaxID=2500179 RepID=A0A437QXS3_9PROT)

HSP 1 Score: 317 bits (812), Expect = 1.350e-104
Identity = 165/247 (66.80%), Postives = 198/247 (80.16%), Query Frame = 1
Query:  190 KLNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
            +L  VP NTK++F+GY + +  FS +LVV S+ LF V+GLN GIDF GG ++EVKTEGPAD+   R+ LG LGLG+V +QEFG PD +LIRVQ+Q G +  Q A I  I   LG +V EYRR E VGPTVGAEL E+A+ AV+ AIGAIL+YIWFRFEWQ+GVGAVIAL+HDVI TIGLFAL QLEFNL+TVAAILTIAGYSINDTVV+YDRVR++LRR+KK+  + L NLA N+TLSRT MTS TT
Sbjct:    2 RLKIVPDNTKIDFIGYHKLAIGFSIILVVVSLGLFAVRGLNLGIDFLGGIMLEVKTEGPADIGTFRSDLGSLGLGDVGIQEFGEPDVLLIRVQRQPGGDEAQQAAIKTITETLGDRVVEYRRNEVVGPTVGAELQEAALIAVLAAIGAILVYIWFRFEWQYGVGAVIALSHDVIATIGLFALFQLEFNLSTVAAILTIAGYSINDTVVVYDRVRDKLRRFKKLPFEELFNLAINKTLSRTVMTSFTT 248          
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Match: A0A3D9HQ52_9PROT (Protein-export membrane protein SecF n=1 Tax=Aestuariispira insulae TaxID=1461337 RepID=A0A3D9HQ52_9PROT)

HSP 1 Score: 317 bits (811), Expect = 1.570e-104
Identity = 161/246 (65.45%), Postives = 199/246 (80.89%), Query Frame = 1
Query:  193 LNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKGGFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGSEGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGAILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTIAGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT 930
            L  +P   K++F G R  ++ FS LLV+ S+ LF  +GLN GIDF GG  IE++TEGPAD+S +R+T+GGL LG+V +QEFG  D++LIR+Q+Q G E    A I ++K ALG  V EYRRTE VGPTVGAEL E+A+WAVV A+GAILIYIWFRFEWQFGV AVIALTHDVITTIGLF+L QL+FNLAT+AA+LTIAGYSINDTVV++DRVRE +R+YKKM++  L NL+ N+TLSRT +TSVTT
Sbjct:    4 LKLIPDTPKIDFTGKRVIAFAFSVLLVLGSLGLFFGKGLNLGIDFLGGIQIEIQTEGPADISAIRSTVGGLDLGDVSIQEFGETDNVLIRIQEQAGGEESVQAAIEKVKAALGDTVKEYRRTESVGPTVGAELQEAALWAVVSAVGAILIYIWFRFEWQFGVAAVIALTHDVITTIGLFSLLQLDFNLATIAALLTIAGYSINDTVVVFDRVRENMRKYKKMELAELFNLSVNQTLSRTLITSVTT 249          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101056.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7I691_9PROT1.400e-13180.97Protein-export membrane protein SecF n=2 Tax=Alpha... [more]
A0A2E7PKA7_9PROT1.140e-13080.57Protein-export membrane protein SecF n=1 Tax=Rhodo... [more]
A0A2E8XN36_9PROT8.590e-12783.98Protein-export membrane protein SecF n=1 Tax=Alpha... [more]
A0A848WET6_9PROT4.570e-11775.20Protein-export membrane protein SecF n=1 Tax=Alpha... [more]
A0A2E3XG44_9PROT5.220e-11371.54Protein-export membrane protein SecF n=1 Tax=Rhodo... [more]
A0A7W2BM09_9HYPH7.890e-10757.23Multifunctional fusion protein n=1 Tax=Hyphomicrob... [more]
A0A2S6QH78_9PROT1.620e-10669.11Protein-export membrane protein SecF n=1 Tax=Alpha... [more]
A0A2E5PK42_9PROT1.730e-10668.29Protein-export membrane protein SecF n=1 Tax=Rhodo... [more]
A0A437QXS3_9PROT1.350e-10466.80Protein-export membrane protein SecF n=1 Tax=Hwang... [more]
A0A3D9HQ52_9PROT1.570e-10465.45Protein-export membrane protein SecF n=1 Tax=Aestu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101056contigL-digitata_M_contig101056:3..932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1282876.BAOK01000001_gene2044
Preferred namesecF
PFAMsSecD_SecF,Sec_GG
Model size930
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03074
KEGG TC2.A.6.4,3.A.5.2,3.A.5.7
KEGG Pathwayko03060,ko03070,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.2e-99
EggNOG OGsCOG0341@1|root,COG0341@2|Bacteria,1MU74@1224|Proteobacteria,2TSFW@28211|Alphaproteobacteria,4BPBR@82117|unclassified Alphaproteobacteria
DescriptionPart of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Cds size747
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406613.7020824-UTR-L-digitata_M_contig101056:2..1851682406613.7020824-UTR-L-digitata_M_contig101056:2..185Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig101056 3..185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406613.7169566-CDS-L-digitata_M_contig101056:185..9321682406613.7169566-CDS-L-digitata_M_contig101056:185..932Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101056 186..932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101056.1.1prot_L-digitata_M_contig101056.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101056 186..932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101056.1.1

>prot_L-digitata_M_contig101056.1.1 ID=prot_L-digitata_M_contig101056.1.1|Name=mRNA_L-digitata_M_contig101056.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=249bp
MFKLNFVPQNTKVNFVGYRRFSYPFSALLVVASIALFLVQGLNFGIDFKG
GFLIEVKTEGPADVSELRNTLGGLGLGEVQVQEFGAPDDILIRVQQQDGS
EGEQAAVIAQIKGALGSQVAEYRRTEFVGPTVGAELIESAIWAVVLAIGA
ILIYIWFRFEWQFGVGAVIALTHDVITTIGLFALTQLEFNLATVAAILTI
AGYSINDTVVIYDRVREELRRYKKMDMDALLNLAANRTLSRTFMTSVTT
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mRNA from alignment at L-digitata_M_contig101056:3..932+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101056.1.1 ID=mRNA_L-digitata_M_contig101056.1.1|Name=mRNA_L-digitata_M_contig101056.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=930bp|location=Sequence derived from alignment at L-digitata_M_contig101056:3..932+ (Laminaria digitata LdigPH10_18mv male)
ACGACGCTGATTGCTGCGATCCTGCTGTTTCAGTTCGGCTCGGGTCCCAT CAAGGGGTTTGCCGTCACACTTTCCATCGGAATTCTGACTTCGATGTTCA CAGCCCTGATGCTGACGCGGCTGTTTGTTGTTGTCTGGTTGCGTCGCACC CGACCGAAAACTCTGGCGATCTAGGGGCGCATCATGTTCAAACTCAATTT CGTTCCCCAAAACACCAAGGTCAATTTTGTTGGGTACCGGCGGTTCTCGT ACCCATTCTCAGCGCTGCTGGTTGTGGCGTCGATTGCCTTGTTCCTGGTT CAGGGCCTCAACTTCGGCATTGATTTCAAGGGCGGGTTCCTGATCGAGGT CAAGACCGAAGGCCCGGCCGATGTGAGTGAACTCCGCAACACACTCGGAG GCCTCGGACTTGGTGAAGTGCAGGTGCAGGAATTTGGCGCACCCGACGAT ATCCTGATCCGTGTTCAGCAGCAGGATGGCTCGGAAGGTGAGCAGGCGGC TGTCATCGCGCAGATCAAGGGCGCACTTGGCTCTCAGGTCGCCGAGTATC GCCGAACAGAGTTCGTCGGCCCGACTGTGGGAGCCGAGCTCATTGAGTCT GCAATCTGGGCTGTGGTTCTCGCGATTGGCGCGATCCTGATCTACATCTG GTTCCGCTTTGAGTGGCAGTTCGGTGTCGGGGCGGTCATTGCCCTGACCC ATGACGTGATCACAACTATCGGTCTGTTTGCGCTCACGCAGCTGGAATTT AATCTTGCGACGGTCGCGGCGATCCTGACCATTGCGGGTTACTCGATCAA CGATACGGTCGTGATCTATGACCGTGTTCGTGAAGAGCTGCGCCGTTACA AGAAAATGGATATGGACGCGCTGCTCAATCTGGCAGCCAACCGAACGCTG TCGCGTACCTTCATGACGAGTGTGACCACC
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Coding sequence (CDS) from alignment at L-digitata_M_contig101056:3..932+

>mRNA_L-digitata_M_contig101056.1.1 ID=mRNA_L-digitata_M_contig101056.1.1|Name=mRNA_L-digitata_M_contig101056.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=747bp|location=Sequence derived from alignment at L-digitata_M_contig101056:3..932+ (Laminaria digitata LdigPH10_18mv male)
ATGTTCAAACTCAATTTCGTTCCCCAAAACACCAAGGTCAATTTTGTTGG
GTACCGGCGGTTCTCGTACCCATTCTCAGCGCTGCTGGTTGTGGCGTCGA
TTGCCTTGTTCCTGGTTCAGGGCCTCAACTTCGGCATTGATTTCAAGGGC
GGGTTCCTGATCGAGGTCAAGACCGAAGGCCCGGCCGATGTGAGTGAACT
CCGCAACACACTCGGAGGCCTCGGACTTGGTGAAGTGCAGGTGCAGGAAT
TTGGCGCACCCGACGATATCCTGATCCGTGTTCAGCAGCAGGATGGCTCG
GAAGGTGAGCAGGCGGCTGTCATCGCGCAGATCAAGGGCGCACTTGGCTC
TCAGGTCGCCGAGTATCGCCGAACAGAGTTCGTCGGCCCGACTGTGGGAG
CCGAGCTCATTGAGTCTGCAATCTGGGCTGTGGTTCTCGCGATTGGCGCG
ATCCTGATCTACATCTGGTTCCGCTTTGAGTGGCAGTTCGGTGTCGGGGC
GGTCATTGCCCTGACCCATGACGTGATCACAACTATCGGTCTGTTTGCGC
TCACGCAGCTGGAATTTAATCTTGCGACGGTCGCGGCGATCCTGACCATT
GCGGGTTACTCGATCAACGATACGGTCGTGATCTATGACCGTGTTCGTGA
AGAGCTGCGCCGTTACAAGAAAATGGATATGGACGCGCTGCTCAATCTGG
CAGCCAACCGAACGCTGTCGCGTACCTTCATGACGAGTGTGACCACC
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