mRNA_L-digitata_M_contig10105.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10105.1.1
Unique NamemRNA_L-digitata_M_contig10105.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig10105.1.1 vs. uniprot
Match: A0A6H5KBW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW2_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 9.050e-68
Identity = 119/163 (73.01%), Postives = 134/163 (82.21%), Query Frame = 1 
Query:    1 QMNAAAKGKKHAMELLEGLYRELAILGVVAFVLWSINVSEAVTIEYNDKHLFEQIHMTLFLAALFHSFPIGMVVLYSRQTIRRWDMFEDDEMRRYKDLKQQYRRTAAQLGIRHSQLKRGACLWTS------HPILCRRLSELSEHVSYHALRSQFIKVNQLPK 471
            QMN AA+GK+HA +LLE LYRELAILGVVAF+LWSINVS AV IEY DKH FEQIHM LFLAAL H+F +G+V LY+RQ  RRWD+FEDDEMRRYKDLKQQ+RRTA +LGIRH+ LK G   W +      HPIL RRLSELSEHV YHA+R+QFIK NQLPK
Sbjct:   61 QMNHAAEGKRHAQDLLETLYRELAILGVVAFILWSINVSPAVDIEYGDKHFFEQIHMALFLAALLHTFFVGVVALYARQINRRWDIFEDDEMRRYKDLKQQHRRTAQKLGIRHADLKYGIGTWRAAWLTVRHPILSRRLSELSEHVGYHAIRAQFIKSNQLPK 223
[Close]
BLAST of mRNA_L-digitata_M_contig10105.1.1 vs. uniprot
Match: D7FXU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXU3_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 1.590e-66
Identity = 118/163 (72.39%), Postives = 133/163 (81.60%), Query Frame = 1 
Query:    1 QMNAAAKGKKHAMELLEGLYRELAILGVVAFVLWSINVSEAVTIEYNDKHLFEQIHMTLFLAALFHSFPIGMVVLYSRQTIRRWDMFEDDEMRRYKDLKQQYRRTAAQLGIRHSQLKRGACLWTS------HPILCRRLSELSEHVSYHALRSQFIKVNQLPK 471
            QMN AA+GK+HA +LLE LYRELAILGVVAF+LWSINVS AV IEY DKH FEQIHM LFLAAL H+F +G+V LY+RQ  RRWD+FEDDEMRRYKDLKQQ+RRTA +LGIR + LK G   W +      HPIL RRLSELSEHV YHA+R+QFIK NQLPK
Sbjct:   69 QMNHAAEGKRHAQDLLETLYRELAILGVVAFILWSINVSPAVDIEYGDKHFFEQIHMALFLAALLHTFFVGVVALYARQINRRWDIFEDDEMRRYKDLKQQHRRTAQKLGIRQADLKYGIGTWRAAWLTVRHPILFRRLSELSEHVGYHAIRAQFIKSNQLPK 231
[Close]
BLAST of mRNA_L-digitata_M_contig10105.1.1 vs. uniprot
Match: A0A7S1TZ75_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZ75_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 7.920e-19
Identity = 56/156 (35.90%), Postives = 85/156 (54.49%), Query Frame = 1 
Query:   25 KKHAMELLEGLYRELAILGVVAFVLWSINVSEAVTIEYNDKHLFEQIHMTLFLAALFHSFPIGMVVLYSRQTIRRWDMFE--DDEMRRYKDLKQQYRRTAAQLGIRHSQLKRGAC----LWT--SHPILCRRLSELSEHVSYHALRSQFIKVNQLP 468
            KK   E++  +YREL ILG+VAF L+ I  SE VTI   DKH+FE++H+TLFL A+ +   I  V+ +S      W  +E   +   +++++++ +   A Q+G       R A     LW   +HP+       L EHV +H LR  FI+ N +P
Sbjct:   52 KKSLREIVNMMYRELMILGIVAFGLFVIESSELVTISDTDKHVFEEVHLTLFLVAVIYGLMIVAVLYFSYAIDNTWKHYEALQNVSGQWQEIRENFDALARQIGAPSGYDARSAGITSHLWRFLAHPVSWMNYKRLLEHVRFHELRQHFIRANHMP 207
[Close]
BLAST of mRNA_L-digitata_M_contig10105.1.1 vs. uniprot
Match: A0A5A8C6J9_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C6J9_CAFRO)

HSP 1 Score: 73.2 bits (178), Expect = 3.760e-12
Identity = 45/152 (29.61%), Postives = 83/152 (54.61%), Query Frame = 1 
Query:   28 KHAMELLEGLYRELAILGVVAFVLWSINVSEAVTIEYNDKHLFEQIHMTLFLAALFHSFPIGMVVLYSRQTIRRWDMFEDDEMRRYKDLKQQYRRTAAQLGIRHSQLKRGACLWTSHPILCR-----RLSELSEHVSYHALRSQFIKVNQLP 468
            +H  +++E  Y ELA++G+VAF+L+ I+++    I    +H FE +HMTLFL A+ H+  +  +V  S +  +RW+  E  + R +++ K++    +A++  R   L+          + C      + S L E V +H L+ +F++ N LP
Sbjct:   38 RHLEQMIEHTYAELAVVGIVAFLLFVIDMTTD-GISPTQRHSFETVHMTLFLVAIVHAIVVVTLVFLSMRISKRWERIEAHDFRHWREAKEEKFALSARIASRPCLLR----------VFCGAADALQYSLLLELVRFHELKWRFLRNNHLP 178
[Close]
BLAST of mRNA_L-digitata_M_contig10105.1.1 vs. uniprot
Match: A0A5A8E3X0_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E3X0_CAFRO)

HSP 1 Score: 73.2 bits (178), Expect = 4.210e-12
Identity = 45/152 (29.61%), Postives = 83/152 (54.61%), Query Frame = 1 
Query:   28 KHAMELLEGLYRELAILGVVAFVLWSINVSEAVTIEYNDKHLFEQIHMTLFLAALFHSFPIGMVVLYSRQTIRRWDMFEDDEMRRYKDLKQQYRRTAAQLGIRHSQLKRGACLWTSHPILCR-----RLSELSEHVSYHALRSQFIKVNQLP 468
            +H  +++E  Y ELA++G+VAF+L+ I+++    I    +H FE +HMTLFL A+ H+  +  +V  S +  +RW+  E  + R +++ K++    +A++  R   L+          + C      + S L E V +H L+ +F++ N LP
Sbjct:   38 RHLEQMIEHTYAELAVVGIVAFLLFVIDMTTD-GISPTQRHSFETVHMTLFLVAIVHAIVVVTLVFLSMRISKRWERIEAHDFRHWREAKEEKFALSARIASRPCLLR----------VFCGAADALQYSLLLELVRFHELKWRFLRNNHLP 178
[Close]
BLAST of mRNA_L-digitata_M_contig10105.1.1 vs. uniprot
Match: A0A5A8EH70_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EH70_CAFRO)

HSP 1 Score: 73.2 bits (178), Expect = 4.370e-12
Identity = 45/152 (29.61%), Postives = 83/152 (54.61%), Query Frame = 1 
Query:   28 KHAMELLEGLYRELAILGVVAFVLWSINVSEAVTIEYNDKHLFEQIHMTLFLAALFHSFPIGMVVLYSRQTIRRWDMFEDDEMRRYKDLKQQYRRTAAQLGIRHSQLKRGACLWTSHPILCR-----RLSELSEHVSYHALRSQFIKVNQLP 468
            +H  +++E  Y ELA++G+VAF+L+ I+++    I    +H FE +HMTLFL A+ H+  +  +V  S +  +RW+  E  + R +++ K++    +A++  R   L+          + C      + S L E V +H L+ +F++ N LP
Sbjct:   38 RHLEQMIEHTYAELAVVGIVAFLLFVIDMTTD-GISPTQRHSFETVHMTLFLVAIVHAIVVVTLVFLSMRISKRWERIEAHDFRHWREAKEEKFALSARIASRPCLLR----------VFCGAADALQYSLLLELVRFHELKWRFLRNNHLP 178
[Close]
BLAST of mRNA_L-digitata_M_contig10105.1.1 vs. uniprot
Match: A0A7S0ZF18_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZF18_9RHOD)

HSP 1 Score: 53.5 bits (127), Expect = 6.950e-6
Identity = 47/140 (33.57%), Postives = 70/140 (50.00%), Query Frame = 1 
Query:   55 LYRELAILGVVAFVLWSINVSEAVTIEYNDKHLFEQIHMTLFLAALFHSFPIGMVVLYSRQTIRRWDMFEDDEMRRYKDLKQQYRRTAAQLGIRHSQLKRGACLWTSHPIL-CRRLSELSEHVSYHALRSQFIKVNQLPK 471
            LYREL +LG+++  L  I V   V ++++    FE  H+ +FL A+F SF + +  + S     RW   E      Y++LK +Y     Q   + S L     LWT   I    RL  LS+ +S+H  R QFI   +LP+
Sbjct:    3 LYRELMVLGLIS--LGVILVETQVYVDHDLLIAFESAHVFVFLLAIFFSFTVIVSAVSSIALSARWKRLEVLAFDDYQELKIEYEHLKDQQESK-SNLFWKWFLWTHGDISKIWRLRSLSDIMSFHDARFQFIYYRKLPE 139
[Close]
BLAST of mRNA_L-digitata_M_contig10105.1.1 vs. uniprot
Match: A0A7S2S7M7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7M7_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 9.260e-5
Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    1 QMNAAAKGKKHAMELLEGLYRELAILGVVAFVLWSINVSEAVTIEYNDKHLFEQIHMTLFLAALFH 198
            ++N + +   +  E+L  +Y+EL ILG+VAF+L++I +     ++   KH FE +HMTLFL AL +
Sbjct:   61 KLNHSIQKHLNGREILNMMYKELMILGIVAFLLFAIEIWGETEVDL--KHEFEMVHMTLFLIALMY 124
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10105.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KBW2_9PHAE9.050e-6873.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXU3_ECTSI1.590e-6672.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1TZ75_9STRA7.920e-1935.90Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A5A8C6J9_CAFRO3.760e-1229.61Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8E3X0_CAFRO4.210e-1229.61Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8EH70_CAFRO4.370e-1229.61Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A7S0ZF18_9RHOD6.950e-633.57Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A7S2S7M7_9STRA9.260e-539.39Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10105contigL-digitata_M_contig10105:132..6696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXU3
PFAMsMlo
Model size474
Max annot lvl2759|Eukaryota
KEGG koko:K08472
Hectar predicted targeting categorysignal peptide
Exons4
Evalue1.65e-66
EggNOG OGs2CZNV@1|root,2SB25@2759|Eukaryota
Ec32 ortholog descriptionMlo-related protein
Ec32 orthologEc-20_003310.1
DescriptionMlo family
Cds size471
COG categoryU
BRITEko00000,ko04030
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406613.5975351-UTR-L-digitata_M_contig10105:131..1341682406613.5975351-UTR-L-digitata_M_contig10105:131..134Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10105 132..134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406613.6059122-CDS-L-digitata_M_contig10105:134..2661682406613.6059122-CDS-L-digitata_M_contig10105:134..266Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10105 135..266 +
1682406613.6130724-CDS-L-digitata_M_contig10105:1379..15251682406613.6130724-CDS-L-digitata_M_contig10105:1379..1525Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10105 1380..1525 +
1682406613.620109-CDS-L-digitata_M_contig10105:6034..61101682406613.620109-CDS-L-digitata_M_contig10105:6034..6110Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10105 6035..6110 +
1682406613.627206-CDS-L-digitata_M_contig10105:6579..66961682406613.627206-CDS-L-digitata_M_contig10105:6579..6696Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10105 6580..6696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10105.1.1prot_L-digitata_M_contig10105.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10105 135..6696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10105.1.1

>prot_L-digitata_M_contig10105.1.1 ID=prot_L-digitata_M_contig10105.1.1|Name=mRNA_L-digitata_M_contig10105.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=157bp
MNAAAKGKKHAMELLEGLYRELAILGVVAFVLWSINVSEAVTIEYNDKHL
FEQIHMTLFLAALFHSFPIGMVVLYSRQTIRRWDMFEDDEMRRYKDLKQQ
YRRTAAQLGIRHSQLKRGACLWTSHPILCRRLSELSEHVSYHALRSQFIK
VNQLPK*
back to top

mRNA from alignment at L-digitata_M_contig10105:132..6696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10105.1.1 ID=mRNA_L-digitata_M_contig10105.1.1|Name=mRNA_L-digitata_M_contig10105.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=6565bp|location=Sequence derived from alignment at L-digitata_M_contig10105:132..6696+ (Laminaria digitata LdigPH10_18mv male)
CAGATGAACGCTGCCGCCAAGGGGAAAAAGCACGCCATGGAACTCCTCGA
GGGGCTGTACCGAGAGCTCGCCATCCTGGGCGTCGTTGCGTTCGTCCTGT
GGTCCATCAACGTTTCCGAGGCCGTCACCATTGAGGTCAGGGCAGGTCGA
TTTCATTTTGATATTATTCGCCTGATTTTGTGTAGAAACATGCCTCCTAG
GTACAGTAGTACCAAAACGTTCCCAAGACCTGATACCGGGTAGCATAATT
GCCTGCTTGCCGAAAGCAGTACCGTAACCGATGCATGCTACCTAGGGGCA
AACCCTATATTTTCTGAGGCTCCTCAAAATGAGGAGCTCTCTAGGTCACC
CAAAATCTGACGAACAACGAACCAATAATTTACGATCCTCCACGACCACC
TCGGTGATCAAAGAATAAGGTTGTTACTAAACACGAATGGCATTCCAACA
GTATTGGATACCACTCTGAGCGTAAATATAAGGAACATTTAGGCATTAAT
ATCAAGACCAAATAGTCCTTATAATTCCTCAAATTGCTACCTCTGTCGTA
GCATCTTGGTTCAGCATTGCCTCTTGTTTGTTTCACAACAACACAGCTGC
ACCCATTGCCTTAAGTCGGTATAAACAAATATTTGGCGACAAACCGCCTG
TAAAACACAGCGGAGTTGCCATGGTTTTGAAGTCGAACAAAAAGCGACGG
CGCGCGTAAGAGTGTTTTGCAAAACGAATACAGCTGCCCTCGGGAGTAGA
AAGTAGCAGGTAATCGTCAACCCTTAACATCGTGTGCCTCGGAGGTGTGT
TTGCATCCGTCCGGCCACAACACAAGAGCATGTTGCTGTTCGTTTCATGC
TGCACGTGGCACGTGCCAACACCTCAACAATTTTCGATAAGCGTGCAGAT
CACGTCGCGCCTCGTGCTTGCCACTCCCACTCTTATGTTCTTGACTCCCC
CGCCCTCCACCTCCCGTCCGTCCGTCCGGCTCACAGTTCGCCTTTTTTTC
CACGCATCCTTCTCACCCCACCCCCCACCCATGTCGCCCTACGCCACCCC
CCCCCCTCCCCCCTCTATCTCCTCTCTACCTCCCCTCTCCCTTCCCCTAC
CCCTCCCCTGCGCGCTGTTCTCCTGCCCTCCCTCTCCCCCTTCCGCCCCA
CGCCCCGCCCCCCTTCCTATCCATTAACCCACTCATACCTGCCGTCATTT
TCGCACATGCGCCTGTTGGAATTCTGCATGTTTTATTTCTACCGCCAGTA
CAACGACAAGCACCTGTTCGAGCAGATCCACATGACCCTGTTTCTGGCGG
CCCTGTTCCACTCATTTCCCATCGGGATGGTGGTTCTCTACTCCAGGCAG
ACCATACGCCGCTGGGACATGTTTGAGGACGACGAAATGCGCAGGTACTA
CGTAACTAAGCCCCGCGTGTGCCAGACTGGTGCTACGGTAGGGGGGTAGT
TTGTTTTTGGTATTTTGGTTTTAGTCGCTCGGAGCCACTCGGCCGAGTGA
CTACCCAATTTCGTTGCAAGTCTTAAGACTTTTTGTGCATTTTTCGGCTT
CGTGATGTGATGTGCACCGAAAATGGGATTGTTTGCTGCGCTGCGCCATC
AGTATATTTTCCAAGCTTGTTTTTCGAGCTCGGTGCGGAACCCCGCTCGC
CCGAGTGGCCTAAACGCGGTAGTGAAAATGGGATGTAGCCCCCCTACCGT
AGTCACCAGTCTGCATTACACCCCTGCCGTTCACCGCTCCCAAGATTCCA
TTTCGTAAAATTGTGTACACCTATAAGACGCGTTCTACGATAGGGGGTGC
ACCTAACACGCGTTTTACGATAGAGGTAGCACATTTCGAGAAAAACTGTT
TCTGGCTGACGGGGCTCCTTAATAGCCCAAAATCGATCGAATCTCGTTAG
TTTTTTTCAATATTTTGTATTTTGTACCTAAGCCATGGAAGTTTTGGTCG
GCTTAAGTGGACTTTTGTTTCCAAAAATTCCGTTTTTTGACGATTTTTAA
AGCACCTCAAGTGAGGAGCCTCAGAAAATTTAGGGTGCACCTCTACCGTA
GCATGTGTCCTAACTTTGTTTTTTCTGAGGCTCCTCACTTGATTGAGGAG
CTCCATAGTTCGTCCGAAACCGGACTTTGGGCGGGGAAAAAAAACGTACG
CATAAGCCGACGAAACATACCATGCCTTCGGTACAAACTAAAACAAAATG
ACAAAAACAAAATGACAAAAACAAAACTAGATTCGAACAATATTGGGTAT
AAGGAGGCCCGTCAGCCAGAAACATTTTTTGAATTAAAAATGCTACATAC
GTACGCGTACGTCTATCTCTTACGAGCACGCATCTGTAAAAGGGCCATTT
CTAGGGCTTACCTGTTCATCGTCTCGTAGGCACTCGTGCGAGCGGCTACT
CTATTTTGTTGCGGTCTTGAGCCATCCCACACGGCTTAATAGCGTGGGTA
AGCAGAATTCGACACGAGCCGACGAGGGAAGAAAGTGCTGAACTCTTCTA
GCGATAANNNNNNNNNNGCACGTACCGTAGTGAGGAGGGGGGAGAAGAGC
CTGTTTTGTGACCCCGGATCTGAGTTACGACTATGGAGGGAGAGAGACAG
AAATGTACGACGATAATAAATGCGATGGAAAATAAAACAATAAAAAACAC
GGTAAGGGTTGCCCTTTTTGGGCCAAACGTTTATTATGTCGGGTTGAGCT
TGGACAATGACTTTTTTTTTTAAAGCCCCGTTTTCTATCCAGTACTGCTT
TTCTATCCAGTACTGCATACCATGTGTATATATTGTAAAGTGGTGAAAGG
CGGCTCGGTTGAGCTCACTCAAGTGAGGAACTACCGGTTAACACGATAAA
TGTATTAGCCGAACCTGTTTTAAGACTAGCGACGCGTGCTACGATATAAA
GGTAGCACATTTCAGTTAAAAAATAATTTGACTGACGGGGCTCCTTAACC
CAATGTTGTTCGAATCTCGTTCGTTTTGGTCAATACCAGTATTGTTTAGT
TTTGAACCGAAGCCATGGAAGGTTTCGTCGGCTTAAGCGTACGCCTTTTT
CCCCACCCAATGTCCGGTTTTGAACGAATTATGGAGCTCCTCAAGTGAGG
AGCCTCAGAAAAAGCGACCAAGGCTACGGTAGGGGGGGTGTCGCTTTTAG
GCCCTAGTTTTTCAGCCGCCAAGAGCCACTCGGCCGAGTGACCGGCCGAT
TTACTTGCAGGGTTAAGCTTTTGGGCTTTTTTTGTTTCGCGTTATGCACC
ATAATTGGATCGTGTGTGTCGGTGCGCCAACAAAAACATTCCAATATCCA
TTTTGGAGTAAGGTACAGAGCCACTCGCCCGAGTGGCCTGAACGTGGTAA
TGCAAATGGGGGTGGCCACCCTACCGTAGCACCAGTGTACTGTCGCATGC
GTCTAGCGCATAGAAATGTCGGTTTGGTTGCGCGAATGCAGTTTCTTCGA
AGTCGTGAGTCATGTGTCGGGGGTGAGATACTGAGCCCCTCACGTGAAGA
GCTCAGAACATTCTGCTGCACCCCTACCAGGGATTGACTCTCTTAAGCTT
TGCGGTTGCCGTGAGTCATCCCACGGTAGGGGTGCAGCAGATTTTTCTGA
GCTCCTCACATAAGGAGCTCAATATCTCACCCGAAACATGCACTTCGAAG
AACCTCGTTAGCGCAACCCGACAAACGTTTATATGCACCCGTCCTAAAAC
AAATACAGCAGTTAATTATAATACTAACCGGTCAGAAACGTTTGGCCCAA
AAAGTGCAACCCCCATAGTACCGTGGGATGAATCAAGATAGTAAAGGGTT
GCCTGATAGTTATTCTCGTGCGGTCAACAACAGGTTTGACGTCTCAATAT
TCGAGTGAGGTACAGAGCAACTCGCGCCAGTGCCCTATACTCGGTACTCG
TACGAGTAGGGAAAACGGAGTTGCCCTCTTTACCCTATAGCCGTGATCAG
TAATTTCAACCAAATACTTCATGACATCGAGCTTGCGCTTTAGTACATAC
AGTACCCGATACCACAAAAACAAATCCAAGTTTTGGACCAGGCCAAAATA
TAACAATTGGACGAGGCAGACCATACATTGCTGAGACGTGTCTGGAGGAC
GACGATTAAATACGCAGGTGTGACCTACGCTCCACGTATCCATCTCCACC
CGCCGTACGCCACCCTCCCTAGCGCTCCCAGGTTCTTAGCTTGACGTGGG
GGGGTATTAAAACGGCAATCATCGTTGATGACTTCAAAGAGTCGTATCTA
CCTTTATTGCTCACATTACCCCCGACACCGCTAAGAACCATAATTATTAT
GGCCAGGCCCAAAATGAAACGTGAGGCACTGGGATTATGCTACCATATTT
TCAGTACACCTAACGTTTTAGCATTTTCGTGCACATTGAATAACAACTCA
AACAACTACGTTGTGCTGCCGAGTACTGTACTGCTGTAGACATTTAATAT
CACTGAATTCAAGTAGTTTCACCGCGAGCTGTTGGCGTGAAGATATGAAG
GAGTAAAGGATGCCGACGCTTGTCCGAGCTCTATGCCAAAACCTATTTCC
ATGAAGGACGCGCGTGACTGGTGCCACGGGAGGGGTGTCACGTTTTTGGT
CCTTCTCAGAGTCACTCATCCGCGTGACTATTCCCGATTTCAAACCCTTC
TGAAGCTGTTTCGCTCTTTGCGTTTGCTGTACTTATCGACCTGAGATTGT
TTGACATGCCGCGCTATCAAATTGTTTTCAAGTTGCATGTTGATTTCGAA
TGTAGCCACTCGCCGGAGTGGCCTAGGCGCGGTAGTCAAAATGAGGGTAG
CCCACCTACCGTAGCAGCAGTCGCGTAACAGTTAGCGTGGGACAGCAGTG
GGTGTGTGAGTGGTGCACCAAACGCCGCAGTGCGTTTGGTGGAGAGCTCC
TTGTTGTATACTCCTTGGTTTCTGCTGCGGTCAAGTATGGATGTGTATGG
ATCGATCACATGCTTGATCGATGTTCAGGGTCCTTGTCGGGAGTTCGTCA
CCTTGAGCGACATTGTCATCATCATCAACACCACCAGCTTTTACACACCA
TCCTAACCACCGCACCATTTATTGGTATCTCACGCGTTTGGGTTGTCAGC
ATTGTTTTCATTGCCACTATCACGACTATCACGGGGGATCATAGTATATA
GGACCTCTTATTCTTAGCAAAAGTAGTGTATTATATAGGTTGTTGTGTAT
ATCGTGGGTCCTATTTACTGTCGTCCCCCGTAACAATGTTATCGTCAGCG
CCATCGTCATCACTGTCACCATCATCATCATCACCACCACCACTGCCGCC
ACCATCACCCACACCCCCACTATCGCATCGAAGCCCAAATGGTTTCCTCA
CACATATTGCTGCTGAACAACAACGTCTTTCACACCTTTCAAATGTAATG
TATCCCTATTTGACCACCCCCCCCAATCCCGCCTCACAAGCGGGTCTTAG
AAGGATGCAGCTTACCCTACATGCGACGTCTTGCCGAACACCTCCCGGTG
CTTTGCGCTTGGTGCTAGCGATGTTTGCCTGGTCGGAGAAAACCCGACAC
GCTCCGTCCCGGCAGCGTAGAGATGCGCAGATCATTGCTTCTCAGCCGCT
CAGAGTCACTCGGCCGAGTGACTACCGATTTCATCGCCTGCTGAAGCTTT
TTGTTTTTTTTTCTGTTTACGATGTACCGATCTGAGATTGTTTGTCACGC
TGCGCTAACAAAAGTGTTTCCCAGCTTAATATTGACTTCGGTACGTAGCC
ACTCGTCGGAGTGGCTTAACGCGGTACATAGTGAAAATGGGGGTAGCCCC
CCTACCGTAGCAGCAGTCATAGCGGCCGCGACCATGCATGAAGGTAAACA
CCCCCCTCCCCCCCCCCGTCACACACCGCGTCCTGTGACATCGCCTATGT
CAGGTACAAGGACCTCAAGCAGCAGTACCGACGCACAGCAGCCCAGCTGG
GCATCAGACACTCACAGCTCAAAAGGGGCGTAGGCATCTTCAAGTGGGCG
AGTCACTTGTCGCTGCGACGCCTTTGTGTAATAATGATTTCCGGTTTTTG
CAGATACGTCAATTTGTGGAGAAGAGAGGTGCTTGAGGACCGCGTTTTGC
ATGTGCACTAGCTTGATCTGGAGTTACACGGTCAATGGTCGATTTTGCGC
ACGGCATCAGTGTGTGACGTGGTCAATTGTTGACCACACAACGCGTTCGC
TTTCTACTCCCATCTGTATGGTTCACCCCCAACATGTACAATGTTTCTGT
GTGTCATGTTTGTGTTACCACACGGTTTGCCCCTTTAGGGTGAATAAACC
AGCACGGACATTTGACGTGCTCGATGCAGACGGGTAAAGTCGTACTTTCG
TCGGTATAAAGTTTCCGAAAACACACACCAAACACAACATCTGGATCGCG
TCCCTATCCCGCGTCCCCGCAACCTGTTTCCATCAACCCGGGAAATAGGC
CTGCCTGTGGACATCGCACCCAATACTCTGTCGAAGACTGTCAGAATTGT
CCGAACACGTCAGCTACCACGCACTCCGGTCCCAGTTCATCAAGGTCAAC
CAGCTCCCTAAGTGA
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig10105:132..6696+

>mRNA_L-digitata_M_contig10105.1.1 ID=mRNA_L-digitata_M_contig10105.1.1|Name=mRNA_L-digitata_M_contig10105.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=471bp|location=Sequence derived from alignment at L-digitata_M_contig10105:132..6696+ (Laminaria digitata LdigPH10_18mv male)
ATGAACGCTGCCGCCAAGGGGAAAAAGCACGCCATGGAACTCCTCGAGGG
GCTGTACCGAGAGCTCGCCATCCTGGGCGTCGTTGCGTTCGTCCTGTGGT
CCATCAACGTTTCCGAGGCCGTCACCATTGAGTACAACGACAAGCACCTG
TTCGAGCAGATCCACATGACCCTGTTTCTGGCGGCCCTGTTCCACTCATT
TCCCATCGGGATGGTGGTTCTCTACTCCAGGCAGACCATACGCCGCTGGG
ACATGTTTGAGGACGACGAAATGCGCAGGTACAAGGACCTCAAGCAGCAG
TACCGACGCACAGCAGCCCAGCTGGGCATCAGACACTCACAGCTCAAAAG
GGGCGCCTGCCTGTGGACATCGCACCCAATACTCTGTCGAAGACTGTCAG
AATTGTCCGAACACGTCAGCTACCACGCACTCCGGTCCCAGTTCATCAAG
GTCAACCAGCTCCCTAAGTGA
back to top