mRNA_L-digitata_M_contig101022.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101022.1.1
Unique NamemRNA_L-digitata_M_contig101022.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101022.1.1 vs. uniprot
Match: D7FXS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS4_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 8.630e-29
Identity = 61/78 (78.21%), Postives = 66/78 (84.62%), Query Frame = 1
Query:    1 QALPIFLGNLVPSWLAVILSVSLVLFFGEIVPSAVFTGKGRLAIAAGMSWFVSGLMFLLGPVAWPISWALVREGRREG 234
            +ALPIFLGNLVPSWLAVILSVSLVLFFGEI PSAVFTGK +LAIA+GMSW V  LM +LGPVAWPI+W L R    EG
Sbjct:  279 EALPIFLGNLVPSWLAVILSVSLVLFFGEIFPSAVFTGKNQLAIASGMSWLVYTLMMVLGPVAWPIAWMLDRVLGIEG 356          
BLAST of mRNA_L-digitata_M_contig101022.1.1 vs. uniprot
Match: A0A6H5KPI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPI7_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 2.720e-28
Identity = 60/78 (76.92%), Postives = 66/78 (84.62%), Query Frame = 1
Query:    1 QALPIFLGNLVPSWLAVILSVSLVLFFGEIVPSAVFTGKGRLAIAAGMSWFVSGLMFLLGPVAWPISWALVREGRREG 234
            +ALPIFLGNLVPSWLAVILSV+LVLFFGEI PSAVFTGK +LAIA+GMSW V  LM +LGPVAWPI+W L R    EG
Sbjct:  276 EALPIFLGNLVPSWLAVILSVTLVLFFGEIFPSAVFTGKNQLAIASGMSWLVYTLMMVLGPVAWPIAWMLDRVLGIEG 353          
BLAST of mRNA_L-digitata_M_contig101022.1.1 vs. uniprot
Match: A0A7S0NQB0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NQB0_9EUKA)

HSP 1 Score: 87.4 bits (215), Expect = 8.200e-20
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 QALPIFLGNLVPSWLAVILSVSLVLFFGEIVPSAVFTGKGRLAIAAGMSWFVSGLMFLLGPVAWPISWALVR 216
            +ALP+FL  LVPSW A+++SV+ VLF GEI+P+A+FTG  +L IAA +S  V G MF L P+AWP++W L R
Sbjct:   60 EALPLFLDELVPSWAAILISVTAVLFLGEIMPAAIFTGPAKLRIAAALSSLVWGCMFFLSPLAWPLAWMLDR 131          
BLAST of mRNA_L-digitata_M_contig101022.1.1 vs. uniprot
Match: A0A812S5I8_9DINO (CBSDUF5 protein n=5 Tax=Symbiodinium TaxID=2949 RepID=A0A812S5I8_9DINO)

HSP 1 Score: 91.7 bits (226), Expect = 8.870e-20
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    1 QALPIFLGNLVPSWLAVILSVSLVLFFGEIVPSAVFTGKGRLAIAAGMSWFVSGLMFLLGPVAWPIS 201
            +ALP+FL  +VPSWLAV+LSVSLVL FGEI+PSAVFTG  +L++AA  S  VS  MFLL PVAWPI+
Sbjct:  148 EALPLFLDQIVPSWLAVVLSVSLVLMFGEIIPSAVFTGSEQLSMAARFSGLVSAFMFLLSPVAWPIA 214          
BLAST of mRNA_L-digitata_M_contig101022.1.1 vs. uniprot
Match: A0A812XK85_SYMPI (CBSDUF5 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XK85_SYMPI)

HSP 1 Score: 90.9 bits (224), Expect = 1.680e-19
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 1
Query:    1 QALPIFLGNLVPSWLAVILSVSLVLFFGEIVPSAVFTGKGRLAIAAGMSWFVSGLMFLLGPVAWPIS 201
            +ALP+FL  +VPSWLAV+LSVSLVL FGEI+PSAVFTG  +L++AA  S  VS +MFLL PVAWPI+
Sbjct:  491 EALPLFLDQVVPSWLAVLLSVSLVLMFGEIIPSAVFTGSEQLSMAARFSGLVSAIMFLLTPVAWPIA 557          
BLAST of mRNA_L-digitata_M_contig101022.1.1 vs. uniprot
Match: A0A7S3XXY8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXY8_HETAK)

HSP 1 Score: 85.9 bits (211), Expect = 8.320e-19
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    1 QALPIFLGNLVPSWLAVILSVSLVLFFGEIVPSAVFTGKGRLAIAAGMSWFVSGLMFLLGPVAWPISWALVREGRREGRR 240
            +ALPIFL  LVP W+AV+LSVSL+L FGEI+PSA+FTG  +L++ +   W V  LM +  P+AWP+ W L R    EG +
Sbjct:   70 EALPIFLDELVPEWVAVLLSVSLLLIFGEILPSAIFTGPRQLSVVSNCIWLVRVLMGVFLPLAWPLGWVLDRVVGHEGMK 149          
BLAST of mRNA_L-digitata_M_contig101022.1.1 vs. uniprot
Match: A0A7S0IV86_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IV86_9EUKA)

HSP 1 Score: 80.9 bits (198), Expect = 8.250e-18
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 QALPIFLGNLVPSWLAVILSVSLVLFFGEIVPSAVFTGKGRLAIAAGMSWFVSGLMFLLGPVAWPISWALVR 216
            +ALPIFL  LVP  +AV+++V+ VLF GEI+P+AVFTG  +L IAA ++ FV G M LL P+AWP++W L R
Sbjct:   11 EALPIFLDALVPPLIAVLIAVTAVLFVGEIIPAAVFTGPNKLQIAASLAPFVWGAMALLSPLAWPLAWLLDR 82          
BLAST of mRNA_L-digitata_M_contig101022.1.1 vs. uniprot
Match: A0A6U4FEE5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FEE5_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.280e-17
Identity = 42/70 (60.00%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    1 QALPIFLGNLVPSWLAVILSVSLVLFFGEIVPSAVFTGKGRLAIAAGMSWFVSGLMFLLGPVAWPISWAL 210
            +ALP+FL  LVPSWLA++LSV+LVLFFGEI+PSA+FTG  +L IAA M+  V  +M +L P+A+PI++ L
Sbjct:   88 EALPLFLDALVPSWLAIVLSVTLVLFFGEIIPSAIFTGPNQLRIAAAMAPVVKIIMLVLSPIAYPIAYCL 157          
BLAST of mRNA_L-digitata_M_contig101022.1.1 vs. uniprot
Match: A0A7S1QD79_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QD79_ALECA)

HSP 1 Score: 84.7 bits (208), Expect = 2.380e-17
Identity = 45/67 (67.16%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    1 QALPIFLGNLVPSWLAVILSVSLVLFFGEIVPSAVFTGKGRLAIAAGMSWFVSGLMFLLGPVAWPIS 201
            +ALP+FL  +VPSWLAVILSV+LVL FGEI+PSAVFTG  +L IAA  +  VS L  LL PVAWPI+
Sbjct:  155 EALPLFLDAVVPSWLAVILSVTLVLMFGEIIPSAVFTGSEQLRIAAKFAPIVSALQCLLAPVAWPIA 221          
BLAST of mRNA_L-digitata_M_contig101022.1.1 vs. uniprot
Match: A0A4D9CSI6_9STRA (CNNM transmembrane domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSI6_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.320e-17
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 QALPIFLGNLVPSWLAVILSVSLVLFFGEIVPSAVFTGKGRLAIAAGMSWFVSGLMFLLGPVAWPISWALVR------EGRREGRRG 243
            +ALP+ LG LVP ++AVILSV+ VLFFGEI+PSAVF G  +L + + M+  V GL+FL  P+AWPIS AL +      EG REG  G
Sbjct:  158 EALPLALGELVPGYIAVILSVTAVLFFGEILPSAVFLGPNQLKLGSRMTPVVWGLIFLFFPIAWPISLALDKVLGGGSEGGREGEDG 244          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101022.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXS4_ECTSI8.630e-2978.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPI7_9PHAE2.720e-2876.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0NQB0_9EUKA8.200e-2056.94Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A812S5I8_9DINO8.870e-2068.66CBSDUF5 protein n=5 Tax=Symbiodinium TaxID=2949 Re... [more]
A0A812XK85_SYMPI1.680e-1968.66CBSDUF5 protein n=1 Tax=Symbiodinium pilosum TaxID... [more]
A0A7S3XXY8_HETAK8.320e-1952.50Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0IV86_9EUKA8.250e-1856.94Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A6U4FEE5_9STRA1.280e-1760.00Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1QD79_ALECA2.380e-1767.16Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A4D9CSI6_9STRA3.320e-1755.17CNNM transmembrane domain-containing protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101022contigL-digitata_M_contig101022:208..453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FXS4
PFAMsCBS,DUF21,Snf7
Model size246
Max annot lvl2759|Eukaryota
KEGG koko:K16302
KEGG TC9.A.40.3
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.41e-29
EggNOG OGsCOG1253@1|root,KOG2118@2759|Eukaryota
Descriptionmagnesium ion homeostasis
Cds size246
COG categoryE
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406613.5513988-CDS-L-digitata_M_contig101022:207..4531682406613.5513988-CDS-L-digitata_M_contig101022:207..453Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101022 208..453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101022.1.1prot_L-digitata_M_contig101022.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101022 208..453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101022.1.1

>prot_L-digitata_M_contig101022.1.1 ID=prot_L-digitata_M_contig101022.1.1|Name=mRNA_L-digitata_M_contig101022.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=82bp
QALPIFLGNLVPSWLAVILSVSLVLFFGEIVPSAVFTGKGRLAIAAGMSW
FVSGLMFLLGPVAWPISWALVREGRREGRRG*
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mRNA from alignment at L-digitata_M_contig101022:208..453+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101022.1.1 ID=mRNA_L-digitata_M_contig101022.1.1|Name=mRNA_L-digitata_M_contig101022.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=246bp|location=Sequence derived from alignment at L-digitata_M_contig101022:208..453+ (Laminaria digitata LdigPH10_18mv male)
CAGGCCCTTCCCATTTTCCTAGGAAACCTTGTACCCTCCTGGTTGGCGGT GATACTCTCGGTTTCCCTCGTACTATTCTTTGGCGAGATTGTCCCCTCTG CTGTTTTCACCGGGAAGGGGCGTCTGGCTATCGCTGCTGGCATGTCGTGG TTCGTGTCTGGCCTCATGTTCTTGCTCGGACCCGTGGCCTGGCCGATCTC GTGGGCCTTGGTGAGAGAGGGACGGCGGGAGGGTAGGAGGGGGTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101022:208..453+

>mRNA_L-digitata_M_contig101022.1.1 ID=mRNA_L-digitata_M_contig101022.1.1|Name=mRNA_L-digitata_M_contig101022.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=246bp|location=Sequence derived from alignment at L-digitata_M_contig101022:208..453+ (Laminaria digitata LdigPH10_18mv male)
CAGGCCCTTCCCATTTTCCTAGGAAACCTTGTACCCTCCTGGTTGGCGGT
GATACTCTCGGTTTCCCTCGTACTATTCTTTGGCGAGATTGTCCCCTCTG
CTGTTTTCACCGGGAAGGGGCGTCTGGCTATCGCTGCTGGCATGTCGTGG
TTCGTGTCTGGCCTCATGTTCTTGCTCGGACCCGTGGCCTGGCCGATCTC
GTGGGCCTTGGTGAGAGAGGGACGGCGGGAGGGTAGGAGGGGGTAG
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