mRNA_L-digitata_M_contig101015.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101015.1.1
Unique NamemRNA_L-digitata_M_contig101015.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101015.1.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.010e-10
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   37 EVTRRIQRAWACFARYKMEIYDRSGVRLRLRMRMLKAEVIDSLLDGCVTWS 189
            E+  R+QRA ACF R    +YDR G  LRL++R+L+AEV+++LL GCVTW+
Sbjct:  144 EINHRVQRAHACFRRNSQAMYDRPGGPLRLKVRLLQAEVVETLLYGCVTWN 194
[Close]
BLAST of mRNA_L-digitata_M_contig101015.1.1 vs. uniprot
Match: A0A6H5L144_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L144_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.430e-8
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   37 EVTRRIQRAWACFARYKMEIYDRSGVRLRLRMRMLKAEVIDSLLDGCVTWS 189
            E+T R  RAW C+ R    +YDR     +L++R+L+AEV+++LLDGC +WS
Sbjct:  468 EITSRSCRAWKCYRRNSASMYDRRRANHQLKIRLLQAEVVETLLDGCASWS 518
[Close]
BLAST of mRNA_L-digitata_M_contig101015.1.1 vs. uniprot
Match: A0A6H5KA63_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA63_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.440e-8
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   37 EVTRRIQRAWACFARYKMEIYDRSGVRLRLRMRMLKAEVIDSLLDGCVTWS 189
            E+T R  RAW C+ R    +YDR     +L++R+L+AEV+++LLDGC +WS
Sbjct:  806 EITSRSCRAWKCYRRNSASMYDRRRANHQLKIRLLQAEVVETLLDGCASWS 856
[Close]
BLAST of mRNA_L-digitata_M_contig101015.1.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 4.620e-8
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:   10 NADWTRRSVEVTRRIQRAWACFARYKMEIYDRSGVRLRLRMRMLKAEVIDSLLDGCVTWS 189
            + D TR   E+  R + AWAC  RY  E++DR     RL++R+L+AE +++LL GC+TWS
Sbjct:  367 HGDLTR---EINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLRAEAMEALLYGCMTWS 423
[Close]
BLAST of mRNA_L-digitata_M_contig101015.1.1 vs. uniprot
Match: A0A6H5L7Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y9_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 7.650e-8
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   37 EVTRRIQRAWACFARYKMEIYDRSGVRLRLRMRMLKAEVIDSLLDGCVTWS 189
            E+T R  RAW C+ R    +YDR  V  +L++R+L+AEV+++LL GC +WS
Sbjct:   57 EITSRSCRAWKCYRRKSASMYDRRRVDRKLKIRLLQAEVVETLLYGCASWS 107
[Close]
BLAST of mRNA_L-digitata_M_contig101015.1.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 8.070e-8
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   37 EVTRRIQRAWACFARYKMEIYDRSGVRLRLRMRMLKAEVIDSLLDGCVTWS 189
            E+T RI RAW C+ R    +YDR     +L++R+L+AEV+ +LL GC +WS
Sbjct:   67 EITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWS 117
[Close]
BLAST of mRNA_L-digitata_M_contig101015.1.1 vs. uniprot
Match: A0A6H5KB07_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB07_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 8.330e-8
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   37 EVTRRIQRAWACFARYKMEIYDRSGVRLRLRMRMLKAEVIDSLLDGCVTWS 189
            E+T RI RAW C+ R    +YDR     +L++R+L+AEV+ +LL GC +WS
Sbjct:   97 EITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWS 147
[Close]
BLAST of mRNA_L-digitata_M_contig101015.1.1 vs. uniprot
Match: A0A6H5JF72_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF72_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 8.700e-8
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   37 EVTRRIQRAWACFARYKMEIYDRSGVRLRLRMRMLKAEVIDSLLDGCVTWS 189
            E+T RI RAW C+ R    +YDR     +L++R+L+AEV+ +LL GC +WS
Sbjct:  366 EITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWS 416
[Close]
BLAST of mRNA_L-digitata_M_contig101015.1.1 vs. uniprot
Match: A0A6H5KKB2_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB2_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 8.720e-8
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   37 EVTRRIQRAWACFARYKMEIYDRSGVRLRLRMRMLKAEVIDSLLDGCVTWS 189
            E+T RI RAW C+ R    +YDR     +L++R+L+AEV+ +LL GC +WS
Sbjct:  431 EITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWS 481
[Close]
BLAST of mRNA_L-digitata_M_contig101015.1.1 vs. uniprot
Match: A0A6H5LM52_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LM52_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 8.770e-8
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   37 EVTRRIQRAWACFARYKMEIYDRSGVRLRLRMRMLKAEVIDSLLDGCVTWS 189
            E+T RI RAW C+ R    +YDR     +L++R+L+AEV+ +LL GC +WS
Sbjct:  696 EITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWS 746
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101015.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2J8_9PHAE3.010e-1054.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L144_9PHAE3.430e-847.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA63_9PHAE3.440e-847.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBT2_9PHAE4.620e-845.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L7Y9_9PHAE7.650e-847.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSH7_9PHAE8.070e-847.06Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB07_9PHAE8.330e-847.06Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JF72_9PHAE8.700e-847.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKB2_9PHAE8.720e-847.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LM52_9PHAE8.770e-847.06Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101015contigL-digitata_M_contig101015:9..197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size189
Hectar predicted targeting categoryother localisation
Exons1
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406613.5044122-CDS-L-digitata_M_contig101015:8..1971682406613.5044122-CDS-L-digitata_M_contig101015:8..197Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101015 9..197 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101015.1.1prot_L-digitata_M_contig101015.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101015 9..197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101015.1.1

>prot_L-digitata_M_contig101015.1.1 ID=prot_L-digitata_M_contig101015.1.1|Name=mRNA_L-digitata_M_contig101015.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=63bp
LITNADWTRRSVEVTRRIQRAWACFARYKMEIYDRSGVRLRLRMRMLKAE
VIDSLLDGCVTWS
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mRNA from alignment at L-digitata_M_contig101015:9..197-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101015.1.1 ID=mRNA_L-digitata_M_contig101015.1.1|Name=mRNA_L-digitata_M_contig101015.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=189bp|location=Sequence derived from alignment at L-digitata_M_contig101015:9..197- (Laminaria digitata LdigPH10_18mv male)
CTTATTACCAACGCAGATTGGACTCGCAGAAGTGTCGAGGTAACGCGTCG
CATTCAGAGGGCATGGGCGTGCTTCGCGCGGTATAAGATGGAAATCTATG
ACCGCTCGGGTGTGCGCCTACGCCTGAGAATGCGGATGCTGAAAGCCGAG
GTAATCGATTCGCTGCTCGACGGATGCGTTACTTGGAGC
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Coding sequence (CDS) from alignment at L-digitata_M_contig101015:9..197-

>mRNA_L-digitata_M_contig101015.1.1 ID=mRNA_L-digitata_M_contig101015.1.1|Name=mRNA_L-digitata_M_contig101015.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=189bp|location=Sequence derived from alignment at L-digitata_M_contig101015:9..197- (Laminaria digitata LdigPH10_18mv male)
CTTATTACCAACGCAGATTGGACTCGCAGAAGTGTCGAGGTAACGCGTCG
CATTCAGAGGGCATGGGCGTGCTTCGCGCGGTATAAGATGGAAATCTATG
ACCGCTCGGGTGTGCGCCTACGCCTGAGAATGCGGATGCTGAAAGCCGAG
GTAATCGATTCGCTGCTCGACGGATGCGTTACTTGGAGC
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