mRNA_L-digitata_M_contig101009.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101009.1.1
Unique NamemRNA_L-digitata_M_contig101009.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig101009.1.1 vs. uniprot
Match: A0A520R2Q2_9DELT (Non-specific serine/threonine protein kinase n=2 Tax=Myxococcales TaxID=29 RepID=A0A520R2Q2_9DELT)

HSP 1 Score: 112 bits (279), Expect = 6.390e-27
Identity = 64/141 (45.39%), Postives = 89/141 (63.12%), Query Frame = 1
Query:   55 RYTLGEMLGEGASATVYDAIDQNSGASVAVKILHPHIQRSATNVVRFEREIEILKRLAHPAVVTMLDCGRDPTSGAMFLVMERLEGATFDTHLDEERPR---LELLNTMRAALPALFAAHQAGIVHRDLKPANLFVPRPGP 468
            RY L  +LGEGA++ VY+A+D+++GA+VAVK+L   +  +A    RF RE  I   L HP +  + + GR P + A +LVMERLEG T    + + RPR    ELL  +     AL AAH AG++HRD+KPAN+F+   GP
Sbjct:   33 RYRLDAVLGEGATSRVYEALDEDTGATVAVKVLDLSLAHAALLEQRFLREARIGTSLQHPNIARVWELGRVPETDAPYLVMERLEGMTLLESM-KRRPRRSFAELLEVIELVGRALSAAHAAGVIHRDVKPANIFLTAEGP 172          
BLAST of mRNA_L-digitata_M_contig101009.1.1 vs. uniprot
Match: A0A520QLA3_9DELT (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Sandaracinaceae bacterium TaxID=2510337 RepID=A0A520QLA3_9DELT)

HSP 1 Score: 105 bits (261), Expect = 2.400e-24
Identity = 61/141 (43.26%), Postives = 77/141 (54.61%), Query Frame = 1
Query:   43 VVGERYTLGEMLGEGASATVYDAIDQNSGASVAVKILHPHIQRSATNVVRFEREIEILKRLAHPAVVTMLDCGRDPTSGAMFLVMERLEGATFDTHLDEER--PRLELLNTMRAALPALFAAHQAGIVHRDLKPANLFVPR 459
            V+G RY +G +LGEG    VY+A        VA+K+LHP I        RFERE  +   L HP  V + D G D  +G +FLVMERLEGA   +H+      P    L  +R    AL AAH   ++HRDLKP NLF+ R
Sbjct:   11 VIGGRYRVGALLGEGGMGAVYEAFQTQLNRPVAIKLLHPEIGAQQEARARFEREARVTAALRHPHTVEIYDFGED--AGRLFLVMERLEGAPL-SHVMRAGLLPLARTLEIVRQVADALVAAHALPLIHRDLKPENLFIER 148          
BLAST of mRNA_L-digitata_M_contig101009.1.1 vs. uniprot
Match: A0A521UDN2_9DELT (Non-specific serine/threonine protein kinase n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A521UDN2_9DELT)

HSP 1 Score: 106 bits (265), Expect = 4.970e-24
Identity = 64/150 (42.67%), Postives = 90/150 (60.00%), Query Frame = 1
Query:   25 LPAAPCVVGERYTLGEMLGEGASATVYDAIDQNSGASVAVKILHPHIQRSATNVVRFEREIEILKRLAHPAVVTMLDCGRDPTSGAMFLVMERLEGATFDTHLDEERP--RLELLNTMRAALP---ALFAAHQAGIVHRDLKPANLFVPR 459
            + AA  ++G +Y L  +LGEG    V++AI+QN+   VA+K LH       + V RF RE     R++HP VV +LD   D  +GA ++V E L G + + HL E RP  RL +  T+R  +P   AL AAH+ G+VHRDLKPAN+ + R
Sbjct:   44 MTAAGDILGGKYQLLRLLGEGGMGQVFEAINQNTERRVAIKTLHAQWVTDPSVVQRFLREARAATRISHPNVVDVLDLDVDQPTGAPYIVQEFLAGESLEAHL-EARPGQRLPVDETLRILVPVMEALVAAHRLGVVHRDLKPANILLTR 192          
BLAST of mRNA_L-digitata_M_contig101009.1.1 vs. uniprot
Match: UPI001BDCE297 (Stk1 family PASTA domain-containing Ser/Thr kinase n=2 Tax=unclassified Canibacter TaxID=2634808 RepID=UPI001BDCE297)

HSP 1 Score: 106 bits (265), Expect = 6.500e-24
Identity = 59/148 (39.86%), Postives = 82/148 (55.41%), Query Frame = 1
Query:   43 VVGERYTLGEMLGEGASATVYDAIDQNSGASVAVKILHPHIQRSATNVVRFEREIEILKRLAHPAVVTMLDCGRDPTSGAM------FLVMERLEGATFDTHLDEERPRL-ELLNTMRAALPALFAAHQAGIVHRDLKPANLFVPRPG 465
            ++G+RY LGE +G+G  ATVY  +D   G  VA+KI+   +    T   RF +E +   R+AHP++V +LD G D    A       F+VME + G     HL E R  + E      A L AL  +H+AGIVHRD+KPAN+ +   G
Sbjct:   12 ILGDRYKLGEFIGQGGMATVYRGVDTKLGRQVAIKIMKADLAEDETFRDRFRQEAQAAARMAHPSIVRVLDAGDDIVQTATGPKKLPFIVMEYVAGCNLREHLSESRVSIKEACRITTAVLAALEYSHRAGIVHRDIKPANIMITETG 159          
BLAST of mRNA_L-digitata_M_contig101009.1.1 vs. uniprot
Match: A0A1H1ZLJ1_9ACTN (Non-specific serine/threonine protein kinase n=1 Tax=Friedmanniella luteola TaxID=546871 RepID=A0A1H1ZLJ1_9ACTN)

HSP 1 Score: 106 bits (264), Expect = 1.000e-23
Identity = 63/148 (42.57%), Postives = 85/148 (57.43%), Query Frame = 1
Query:   37 PCVVGERYTLGEMLGEGASATVYDAIDQNSGASVAVKILHPHIQRSATNVVRFEREIEILKRLAHPAVVTMLDCGR--DPTSGAM--FLVMERLEGATFDTHLDE-ERPRLELLNTMRAALPALFAAHQAGIVHRDLKPANLFVPRPG 465
            P VVG+RY LGE LG+G  ATV+ A+D+    +VAVK L  H+    T   RF RE +    L HPA+ ++ D G   DP +G    ++VME +EG+T  T LD    P    L   R+ L AL  +H  G+VHRD+KPAN+ +   G
Sbjct:    5 PVVVGDRYELGEPLGQGGMATVHRALDRRLDRAVAVKRLGLHLAADPTAQARFRREAQASASLNHPAIASVFDTGEGADPATGVSLPYIVMELVEGSTLRTILDAGPLPPERALRITRSVLDALAHSHAMGLVHRDIKPANVMITTDG 152          
BLAST of mRNA_L-digitata_M_contig101009.1.1 vs. uniprot
Match: A0A521TTN9_9DELT (Non-specific serine/threonine protein kinase n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A521TTN9_9DELT)

HSP 1 Score: 103 bits (256), Expect = 5.920e-23
Identity = 56/139 (40.29%), Postives = 80/139 (57.55%), Query Frame = 1
Query:   43 VVGERYTLGEMLGEGASATVYDAIDQNSGASVAVKILHPHIQRSATNVVRFEREIEILKRLAHPAVVTMLDCGRDPTSGAMFLVMERLEGATFDTHLDEER--PRLELLNTMRAALPALFAAHQAGIVHRDLKPANLFV 453
            ++GE+Y +  +LGEG    VY+A +  +   VAVK++ P   R      RF RE +   ++ HP VV++LD GRD TSG++F+V E L G      +DE    P  E L  +   +  L AAH  G+VHRDLKP N+F+
Sbjct:   20 ILGEKYRVSRLLGEGGMGAVYEAENTWTRRRVAVKVMRPEYARDPEATQRFLREAQSAAQVDHPNVVSVLDLGRDATSGSLFIVQEFLVGRELRAMIDERGAVPTEEALALILPVVDGLAAAHALGVVHRDLKPENIFL 158          
BLAST of mRNA_L-digitata_M_contig101009.1.1 vs. uniprot
Match: A0A150S0W9_SORCE (Non-specific serine/threonine protein kinase n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150S0W9_SORCE)

HSP 1 Score: 102 bits (254), Expect = 1.470e-22
Identity = 57/139 (41.01%), Postives = 79/139 (56.83%), Query Frame = 1
Query:   43 VVGERYTLGEMLGEGASATVYDAIDQNSGASVAVKILHPHIQRSATNVVRFEREIEILKRLAHPAVVTMLDCGRDPTSGAMFLVMERLEGATFDTHLDE--ERPRLELLNTMRAALPALFAAHQAGIVHRDLKPANLFV 453
            V+G++Y +  ++GEG    VY+A     G  VAVK++HP   +    V R E E  I  R+ HP +  + D GR P  G+ +LVMERL G T    ++     P  EL++ M   L AL  AH+ GIVHRDLKP N+F+
Sbjct:   37 VIGDKYGVTAIIGEGGMGAVYEAEHLQIGRLVAVKVMHPRETQKREAVSRLEHEARIAGRIGHPNICEVYDMGRLP-DGSPYLVMERLRGETLAQRIERCGAVPPSELVDIMLQVLSALVTAHERGIVHRDLKPENIFL 174          
BLAST of mRNA_L-digitata_M_contig101009.1.1 vs. uniprot
Match: A0A2L0F9S8_SORCE (Non-specific serine/threonine protein kinase n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A2L0F9S8_SORCE)

HSP 1 Score: 102 bits (253), Expect = 1.720e-22
Identity = 58/139 (41.73%), Postives = 78/139 (56.12%), Query Frame = 1
Query:   43 VVGERYTLGEMLGEGASATVYDAIDQNSGASVAVKILHPHIQRSATNVVRFEREIEILKRLAHPAVVTMLDCGRDPTSGAMFLVMERLEGATFDTHLDE--ERPRLELLNTMRAALPALFAAHQAGIVHRDLKPANLFV 453
            V+GE+Y +  ++GEG    VY+A     G  VAVK++HP    S   V R E E  +  R+ HP +  + D GR P  G+ +LVMERL G T    +      P  EL++ M   L AL  AH+ GIVHRDLKP N+F+
Sbjct:   12 VIGEKYGVTAIIGEGGMGAVYEAEHLQIGRLVAVKVMHPRDTPSRDAVSRLEHEARVAGRIGHPNICEVYDMGRLP-DGSPYLVMERLHGETLAQRIARCGAVPPYELVDIMLQVLSALVTAHERGIVHRDLKPDNIFL 149          
BLAST of mRNA_L-digitata_M_contig101009.1.1 vs. uniprot
Match: A0A7V4GGL8_9DELT (Non-specific serine/threonine protein kinase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V4GGL8_9DELT)

HSP 1 Score: 102 bits (253), Expect = 2.680e-22
Identity = 59/140 (42.14%), Postives = 80/140 (57.14%), Query Frame = 1
Query:   43 VVGERYTLGEMLGEGASATVYDAIDQNSGASVAVKILHPHIQRSATNVVRFEREIEILKRLAHPAVVTMLDCGRDPTSGAMFLVMERLEGATFDTHLDEERPRLEL---LNTMRAALPALFAAHQAGIVHRDLKPANLFV 453
            V+G++Y L  MLGEG   +VY+A     G   AVK LHP + R    V RF RE +    + H  ++ + D G  P  GA +LVME LEG +  +H+++  P L L   +  +   L AL  AHQ GIVHRDLKP NL++
Sbjct:    7 VIGDKYLLLRMLGEGGMGSVYEAQHTLIGRRCAVKFLHPELARHRDLVARFVREAQAASSIGHRGIIDIYDVGTTP-DGAPYLVMEFLEGVSVASHMEKHGP-LPLKAAVEVIAQVLSALHVAHQRGIVHRDLKPDNLYL 144          
BLAST of mRNA_L-digitata_M_contig101009.1.1 vs. uniprot
Match: UPI001456807F (protein kinase n=1 Tax=Microbacterium sp. CFH 90308 TaxID=2722803 RepID=UPI001456807F)

HSP 1 Score: 101 bits (252), Expect = 3.910e-22
Identity = 57/146 (39.04%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   28 PAAPCVVGERYTLGEMLGEGASATVYDAIDQNSGASVAVKILHPHIQRSATNVVRFEREIEILKRLAHPAVVTMLDCGRDPTSGA--MFLVMERLEGATFDTHLDEERPRL--ELLNTMRAALPALFAAHQAGIVHRDLKPANLFV 453
            P AP V+  RY LGE+LG G SA+V+ A DQ+SGAS+A+K+LHPH+         F  E    + L HP +V +L  G D +  A   ++ +ER +G T   H+    P    + +  +   L AL AAH  G++HRD+ P+N+ V
Sbjct:    5 PVAPRVLSGRYRLGELLGTGGSASVFAATDQHSGASIAIKVLHPHLSERPAARGAFLAEARRARPLRHPNIVGVLGVGVDESGEAPIAWIALERADGMTLSQHVAARGPLAPADAVVMIDGVLRALEAAHAIGLIHRDVSPSNVMV 150          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101009.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A520R2Q2_9DELT6.390e-2745.39Non-specific serine/threonine protein kinase n=2 T... [more]
A0A520QLA3_9DELT2.400e-2443.26Non-specific serine/threonine protein kinase (Frag... [more]
A0A521UDN2_9DELT4.970e-2442.67Non-specific serine/threonine protein kinase n=1 T... [more]
UPI001BDCE2976.500e-2439.86Stk1 family PASTA domain-containing Ser/Thr kinase... [more]
A0A1H1ZLJ1_9ACTN1.000e-2342.57Non-specific serine/threonine protein kinase n=1 T... [more]
A0A521TTN9_9DELT5.920e-2340.29Non-specific serine/threonine protein kinase n=1 T... [more]
A0A150S0W9_SORCE1.470e-2241.01Non-specific serine/threonine protein kinase n=1 T... [more]
A0A2L0F9S8_SORCE1.720e-2241.73Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7V4GGL8_9DELT2.680e-2242.14Non-specific serine/threonine protein kinase n=1 T... [more]
UPI001456807F3.910e-2239.04protein kinase n=1 Tax=Microbacterium sp. CFH 9030... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101009contigL-digitata_M_contig101009:16..483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1219581.HMPREF1628_02570
Preferred namepknL
PFAMsPASTA,Pkinase
Model size468
Max annot lvl201174|Actinobacteria
KEGG koko:K08884,ko:K12132
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005623,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0036211,GO:0042304,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046777,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0140096,GO:1901564
Exons1
Evalue4.72e-25
EggNOG OGsCOG0515@1|root,COG2815@1|root,COG0515@2|Bacteria,COG2815@2|Bacteria,2GJ1J@201174|Actinobacteria,4D3IX@85005|Actinomycetales
EC2.7.11.1
Descriptionserine threonine protein kinase
Cds size468
COG categoryKLT
BRITEko00000,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406613.4739902-CDS-L-digitata_M_contig101009:15..4831682406613.4739902-CDS-L-digitata_M_contig101009:15..483Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101009 16..483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101009.1.1prot_L-digitata_M_contig101009.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101009 16..483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101009.1.1

>prot_L-digitata_M_contig101009.1.1 ID=prot_L-digitata_M_contig101009.1.1|Name=mRNA_L-digitata_M_contig101009.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=156bp
MTAPGSHTLPAAPCVVGERYTLGEMLGEGASATVYDAIDQNSGASVAVKI
LHPHIQRSATNVVRFEREIEILKRLAHPAVVTMLDCGRDPTSGAMFLVME
RLEGATFDTHLDEERPRLELLNTMRAALPALFAAHQAGIVHRDLKPANLF
VPRPGP
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mRNA from alignment at L-digitata_M_contig101009:16..483-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101009.1.1 ID=mRNA_L-digitata_M_contig101009.1.1|Name=mRNA_L-digitata_M_contig101009.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=468bp|location=Sequence derived from alignment at L-digitata_M_contig101009:16..483- (Laminaria digitata LdigPH10_18mv male)
ATGACCGCACCTGGATCCCATACGCTGCCCGCCGCCCCCTGCGTTGTGGG TGAGCGCTACACGCTGGGCGAGATGCTCGGCGAGGGCGCCAGCGCCACCG TATATGACGCCATCGACCAGAACAGTGGCGCGTCGGTGGCCGTGAAGATC CTGCATCCCCATATCCAACGCAGTGCCACGAATGTGGTGCGCTTTGAGCG CGAAATCGAGATCCTCAAGCGCCTCGCCCACCCCGCGGTGGTGACGATGC TCGACTGCGGCCGAGACCCAACCTCTGGGGCCATGTTCTTGGTTATGGAG CGGCTTGAAGGCGCGACCTTCGATACCCACCTCGACGAAGAACGCCCACG GCTGGAGCTGCTCAATACGATGCGAGCCGCCCTGCCGGCGCTCTTCGCGG CCCACCAAGCGGGCATCGTGCATCGAGACCTGAAGCCGGCAAACCTCTTT GTGCCCCGCCCGGGCCCG
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Coding sequence (CDS) from alignment at L-digitata_M_contig101009:16..483-

>mRNA_L-digitata_M_contig101009.1.1 ID=mRNA_L-digitata_M_contig101009.1.1|Name=mRNA_L-digitata_M_contig101009.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=468bp|location=Sequence derived from alignment at L-digitata_M_contig101009:16..483- (Laminaria digitata LdigPH10_18mv male)
ATGACCGCACCTGGATCCCATACGCTGCCCGCCGCCCCCTGCGTTGTGGG
TGAGCGCTACACGCTGGGCGAGATGCTCGGCGAGGGCGCCAGCGCCACCG
TATATGACGCCATCGACCAGAACAGTGGCGCGTCGGTGGCCGTGAAGATC
CTGCATCCCCATATCCAACGCAGTGCCACGAATGTGGTGCGCTTTGAGCG
CGAAATCGAGATCCTCAAGCGCCTCGCCCACCCCGCGGTGGTGACGATGC
TCGACTGCGGCCGAGACCCAACCTCTGGGGCCATGTTCTTGGTTATGGAG
CGGCTTGAAGGCGCGACCTTCGATACCCACCTCGACGAAGAACGCCCACG
GCTGGAGCTGCTCAATACGATGCGAGCCGCCCTGCCGGCGCTCTTCGCGG
CCCACCAAGCGGGCATCGTGCATCGAGACCTGAAGCCGGCAAACCTCTTT
GTGCCCCGCCCGGGCCCG
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