mRNA_L-digitata_M_contig100992.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100992.2.1
Unique NamemRNA_L-digitata_M_contig100992.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: A0A2E7PJJ2_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PJJ2_9PROT)

HSP 1 Score: 162 bits (411), Expect = 6.540e-50
Identity = 72/110 (65.45%), Postives = 91/110 (82.73%), Query Frame = 1
Query:    1 MSDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFEEM 330
            MSD+RLPT+LWVSAGL + S  ++P  VV +GE+ SGTV+LKL++ DRG  ILTQ+RD+DG+L WFPA DG A+  ADA AYV RA+ RDPD+WVIEIEHREGWHP+E++
Sbjct:    1 MSDNRLPTDLWVSAGLRRASDESIPTAVVRRGERQSGTVILKLNQLDRGCRILTQARDIDGRLAWFPALDGAAIPEADADAYVARAIDRDPDIWVIEIEHREGWHPYEDV 110          
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: A0A2E7I4E7_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E7I4E7_9PROT)

HSP 1 Score: 150 bits (378), Expect = 6.980e-45
Identity = 67/110 (60.91%), Postives = 86/110 (78.18%), Query Frame = 1
Query:    1 MSDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFEEM 330
            M ++RLPT LW+SAGL + S   VP  V+ +GE  SGTV+LKL++ DRGY ILTQ+RD+DG+L WF   DG A+   +A+AYVERA+ RDPDLWVIEIEHREGWHP+ ++
Sbjct:    1 MIENRLPTNLWISAGLRRASDENVPIAVLRRGEHQSGTVILKLNQLDRGYRILTQTRDIDGRLTWFHVLDGAAIPEIEANAYVERAIDRDPDLWVIEIEHREGWHPYNDI 110          
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: A0A848WA11_9PROT (DUF1491 family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848WA11_9PROT)

HSP 1 Score: 149 bits (376), Expect = 1.450e-44
Identity = 66/109 (60.55%), Postives = 84/109 (77.06%), Query Frame = 1
Query:    1 MSDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFEE 327
            MS+ RLPTE+W++AGL +CS   +PA VV +GEK SGTV LKL++ + G  +LTQ RD DGKL WF A DG  +  A+A AY+ER  SRDPD+W+IEIEHR+GWHPFE+
Sbjct:    1 MSEGRLPTEIWLTAGLRRCSNDGIPATVVRRGEKQSGTVALKLNQREAGCRVLTQGRDADGKLTWFAALDGALVDEAEADAYLERTASRDPDIWIIEIEHRDGWHPFED 109          
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: UPI0018726BC3 (DUF1491 family protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI0018726BC3)

HSP 1 Score: 142 bits (359), Expect = 5.470e-42
Identity = 61/106 (57.55%), Postives = 82/106 (77.36%), Query Frame = 1
Query:    7 DDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFE 324
            DDRLP ELW+ A + +C +  +PA VVH+GEKNSG ++LKL++ D+G  +L+Q+RDM+G + W PA  GE +  ADA AY+ERAV RDPD+WV+EIE R+G HPFE
Sbjct:    2 DDRLPAELWIKAHIKRCIVDGIPATVVHRGEKNSGMLILKLNQLDQGVKVLSQTRDMEGAIAWMPALGGELVAEADADAYIERAVKRDPDVWVVEIEDRDGNHPFE 107          
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: A0A2S6QIG9_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium MarineAlpha12_Bin1 TaxID=2013107 RepID=A0A2S6QIG9_9PROT)

HSP 1 Score: 142 bits (357), Expect = 1.170e-41
Identity = 59/108 (54.63%), Postives = 85/108 (78.70%), Query Frame = 1
Query:    1 MSDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFE 324
            M +DRLPTELWV+AGL +C+   +PA VV KGEK SGTV+LK+++ D+ + + TQ R++ GKL W+PA + +++  ++A +Y+ER  S DPD+W+IEIEHR+GWHPFE
Sbjct:    1 MIEDRLPTELWVTAGLRRCNNEGIPATVVKKGEKQSGTVILKINQLDKNFKVFTQGRNVAGKLMWYPALNDKSVEESEADSYLERTASLDPDVWIIEIEHRDGWHPFE 108          
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: A0A545TT25_9PROT (DUF1491 family protein n=1 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545TT25_9PROT)

HSP 1 Score: 140 bits (352), Expect = 6.560e-41
Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 1
Query:    1 MSDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFE 324
            M DDRLPT LW+ A +  CS+   PA V+HKGE+ SG ++LKL++ D G  +LTQ RD+DGKLGW PA  GE +   +A  Y+ RAV RDPDLWV+EIE R+G HPFE
Sbjct:    1 MFDDRLPTHLWIQAHIRTCSIEGTPATVMHKGERMSGMLLLKLNQLDLGCRVLTQMRDIDGKLGWMPALKGELVAEPEADEYIARAVKRDPDLWVVEIESRDGSHPFE 108          
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: A0A8J7S0U9_9PROT (DUF1491 family protein n=1 Tax=Marivibrio halodurans TaxID=2039722 RepID=A0A8J7S0U9_9PROT)

HSP 1 Score: 138 bits (348), Expect = 2.920e-40
Identity = 63/108 (58.33%), Postives = 79/108 (73.15%), Query Frame = 1
Query:    1 MSDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFE 324
            MSDDRLPT LW+ AGL +CS A +PAVV+HKGE+ SG V++K+ R   G  +LTQ RD+DG LGW PA   E +  ADA AY+ERA +RDPDLW IE+E   G +PF+
Sbjct:    1 MSDDRLPTHLWIGAGLSRCSAAGIPAVVLHKGERMSGVVLVKIARVAEGARLLTQQRDLDGVLGWVPALGSERVPEADADAYIERARARDPDLWAIEVEDPSGRNPFD 108          
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: A0A7C7PEN6_9PROT (DUF1491 family protein n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A7C7PEN6_9PROT)

HSP 1 Score: 137 bits (346), Expect = 5.890e-40
Identity = 58/107 (54.21%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    4 SDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFE 324
            +D RLP+E+W+ A L +C    +PA VVH+GEKNSGT++LK+++ + G  +L Q+RD+DG + W PA  GE +  +DA AY+ERAV+RDPD+WV+EIE REG HPF+
Sbjct:    5 ADGRLPSEVWIKAHLRRCFAEGMPATVVHRGEKNSGTLILKINQLEAGCRVLNQTRDLDGAMAWMPALGGELVKESDADAYIERAVARDPDVWVVEIEDREGRHPFD 111          
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: UPI001300CBF3 (DUF1491 family protein n=1 Tax=Skermanella pratensis TaxID=2233999 RepID=UPI001300CBF3)

HSP 1 Score: 137 bits (344), Expect = 1.080e-39
Identity = 63/108 (58.33%), Postives = 76/108 (70.37%), Query Frame = 1
Query:    1 MSDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFE 324
            M DDR+PTELWV A + +C   A+PAV+  KG    G VMLKL++ + G  +LTQ+RDMDGK  W  AK+   +  ADA AY+ERAV RDPDLWVIEIE R G HPFE
Sbjct:    1 MDDDRIPTELWVRAHVRRCISEAIPAVIARKGSPYGGLVMLKLNQLEHGCRVLTQTRDMDGKTAWLAAKENTLMPEADADAYIERAVKRDPDLWVIEIEDRAGRHPFE 108          
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: UPI0019335796 (DUF1491 family protein n=3 Tax=Skermanella TaxID=204447 RepID=UPI0019335796)

HSP 1 Score: 135 bits (341), Expect = 3.100e-39
Identity = 62/108 (57.41%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 MSDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFE 324
            M DDR+PTELWV A + +C   A+PA VV KG    G VMLKL++ ++G  +LTQ+RDMDG+  W  A++   +  ADA AY+ERAV RDPDLWVIEIE R G HPFE
Sbjct:    1 MDDDRIPTELWVKAHVRRCVAEAIPAYVVRKGSPYGGLVMLKLNQLEQGCRVLTQTRDMDGRTAWLAARENALMPEADADAYIERAVKRDPDLWVIEIEDRAGRHPFE 108          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7PJJ2_9PROT6.540e-5065.45Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A2E7I4E7_9PROT6.980e-4560.91Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A848WA11_9PROT1.450e-4460.55DUF1491 family protein n=1 Tax=Alphaproteobacteria... [more]
UPI0018726BC35.470e-4257.55DUF1491 family protein n=1 Tax=Pelagibius sp. NBU2... [more]
A0A2S6QIG9_9PROT1.170e-4154.63Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A545TT25_9PROT6.560e-4157.41DUF1491 family protein n=1 Tax=Denitrobaculum tric... [more]
A0A8J7S0U9_9PROT2.920e-4058.33DUF1491 family protein n=1 Tax=Marivibrio halodura... [more]
A0A7C7PEN6_9PROT5.890e-4054.21DUF1491 family protein n=1 Tax=Kiloniellaceae bact... [more]
UPI001300CBF31.080e-3958.33DUF1491 family protein n=1 Tax=Skermanella pratens... [more]
UPI00193357963.100e-3957.41DUF1491 family protein n=3 Tax=Skermanella TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100992contigL-digitata_M_contig100992:522..854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1089552.KI911559_gene3340
PFAMsDUF1491
Model size333
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.01e-37
EggNOG OGsCOG5447@1|root,COG5447@2|Bacteria,1N1KU@1224|Proteobacteria,2UMI9@28211|Alphaproteobacteria,2JTZM@204441|Rhodospirillales
DescriptionProtein of unknown function (DUF1491)
Cds size333
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406613.1047137-CDS-L-digitata_M_contig100992:521..8541682406613.1047137-CDS-L-digitata_M_contig100992:521..854Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100992 522..854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100992.2.1prot_L-digitata_M_contig100992.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100992 522..854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100992.2.1

>prot_L-digitata_M_contig100992.2.1 ID=prot_L-digitata_M_contig100992.2.1|Name=mRNA_L-digitata_M_contig100992.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=111bp
MSDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGY
LILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEH
REGWHPFEEM*
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mRNA from alignment at L-digitata_M_contig100992:522..854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100992.2.1 ID=mRNA_L-digitata_M_contig100992.2.1|Name=mRNA_L-digitata_M_contig100992.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=333bp|location=Sequence derived from alignment at L-digitata_M_contig100992:522..854+ (Laminaria digitata LdigPH10_18mv male)
ATGTCTGACGACCGACTGCCCACCGAGCTCTGGGTGAGCGCGGGGCTGCA CCAATGTTCGCTCGCCGCGGTGCCCGCCGTGGTGGTTCACAAAGGAGAGA AAAACTCCGGGACCGTCATGCTGAAACTGGACCGGTTTGATCGGGGTTAC CTGATCCTGACACAGTCACGCGACATGGACGGCAAGCTGGGCTGGTTCCC CGCGAAAGACGGAGAAGCGCTCACCAGTGCAGATGCAAGTGCTTATGTGG AACGCGCCGTTTCGCGCGACCCGGATCTTTGGGTGATCGAAATCGAGCAC CGCGAGGGCTGGCACCCGTTTGAAGAAATGTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100992:522..854+

>mRNA_L-digitata_M_contig100992.2.1 ID=mRNA_L-digitata_M_contig100992.2.1|Name=mRNA_L-digitata_M_contig100992.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=333bp|location=Sequence derived from alignment at L-digitata_M_contig100992:522..854+ (Laminaria digitata LdigPH10_18mv male)
ATGTCTGACGACCGACTGCCCACCGAGCTCTGGGTGAGCGCGGGGCTGCA
CCAATGTTCGCTCGCCGCGGTGCCCGCCGTGGTGGTTCACAAAGGAGAGA
AAAACTCCGGGACCGTCATGCTGAAACTGGACCGGTTTGATCGGGGTTAC
CTGATCCTGACACAGTCACGCGACATGGACGGCAAGCTGGGCTGGTTCCC
CGCGAAAGACGGAGAAGCGCTCACCAGTGCAGATGCAAGTGCTTATGTGG
AACGCGCCGTTTCGCGCGACCCGGATCTTTGGGTGATCGAAATCGAGCAC
CGCGAGGGCTGGCACCCGTTTGAAGAAATGTAA
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