mRNA_L-digitata_M_contig100992.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
|
Overview
Homology
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: A0A2E7PJJ2_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PJJ2_9PROT) HSP 1 Score: 162 bits (411), Expect = 6.540e-50 Identity = 72/110 (65.45%), Postives = 91/110 (82.73%), Query Frame = 1
Query: 1 MSDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFEEM 330
MSD+RLPT+LWVSAGL + S ++P VV +GE+ SGTV+LKL++ DRG ILTQ+RD+DG+L WFPA DG A+ ADA AYV RA+ RDPD+WVIEIEHREGWHP+E++
Sbjct: 1 MSDNRLPTDLWVSAGLRRASDESIPTAVVRRGERQSGTVILKLNQLDRGCRILTQARDIDGRLAWFPALDGAAIPEADADAYVARAIDRDPDIWVIEIEHREGWHPYEDV 110
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: A0A2E7I4E7_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E7I4E7_9PROT) HSP 1 Score: 150 bits (378), Expect = 6.980e-45 Identity = 67/110 (60.91%), Postives = 86/110 (78.18%), Query Frame = 1
Query: 1 MSDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFEEM 330
M ++RLPT LW+SAGL + S VP V+ +GE SGTV+LKL++ DRGY ILTQ+RD+DG+L WF DG A+ +A+AYVERA+ RDPDLWVIEIEHREGWHP+ ++
Sbjct: 1 MIENRLPTNLWISAGLRRASDENVPIAVLRRGEHQSGTVILKLNQLDRGYRILTQTRDIDGRLTWFHVLDGAAIPEIEANAYVERAIDRDPDLWVIEIEHREGWHPYNDI 110
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: A0A848WA11_9PROT (DUF1491 family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848WA11_9PROT) HSP 1 Score: 149 bits (376), Expect = 1.450e-44 Identity = 66/109 (60.55%), Postives = 84/109 (77.06%), Query Frame = 1
Query: 1 MSDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFEE 327
MS+ RLPTE+W++AGL +CS +PA VV +GEK SGTV LKL++ + G +LTQ RD DGKL WF A DG + A+A AY+ER SRDPD+W+IEIEHR+GWHPFE+
Sbjct: 1 MSEGRLPTEIWLTAGLRRCSNDGIPATVVRRGEKQSGTVALKLNQREAGCRVLTQGRDADGKLTWFAALDGALVDEAEADAYLERTASRDPDIWIIEIEHRDGWHPFED 109
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: UPI0018726BC3 (DUF1491 family protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI0018726BC3) HSP 1 Score: 142 bits (359), Expect = 5.470e-42 Identity = 61/106 (57.55%), Postives = 82/106 (77.36%), Query Frame = 1
Query: 7 DDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFE 324
DDRLP ELW+ A + +C + +PA VVH+GEKNSG ++LKL++ D+G +L+Q+RDM+G + W PA GE + ADA AY+ERAV RDPD+WV+EIE R+G HPFE
Sbjct: 2 DDRLPAELWIKAHIKRCIVDGIPATVVHRGEKNSGMLILKLNQLDQGVKVLSQTRDMEGAIAWMPALGGELVAEADADAYIERAVKRDPDVWVVEIEDRDGNHPFE 107
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: A0A2S6QIG9_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium MarineAlpha12_Bin1 TaxID=2013107 RepID=A0A2S6QIG9_9PROT) HSP 1 Score: 142 bits (357), Expect = 1.170e-41 Identity = 59/108 (54.63%), Postives = 85/108 (78.70%), Query Frame = 1
Query: 1 MSDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFE 324
M +DRLPTELWV+AGL +C+ +PA VV KGEK SGTV+LK+++ D+ + + TQ R++ GKL W+PA + +++ ++A +Y+ER S DPD+W+IEIEHR+GWHPFE
Sbjct: 1 MIEDRLPTELWVTAGLRRCNNEGIPATVVKKGEKQSGTVILKINQLDKNFKVFTQGRNVAGKLMWYPALNDKSVEESEADSYLERTASLDPDVWIIEIEHRDGWHPFE 108
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: A0A545TT25_9PROT (DUF1491 family protein n=1 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545TT25_9PROT) HSP 1 Score: 140 bits (352), Expect = 6.560e-41 Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 1
Query: 1 MSDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFE 324
M DDRLPT LW+ A + CS+ PA V+HKGE+ SG ++LKL++ D G +LTQ RD+DGKLGW PA GE + +A Y+ RAV RDPDLWV+EIE R+G HPFE
Sbjct: 1 MFDDRLPTHLWIQAHIRTCSIEGTPATVMHKGERMSGMLLLKLNQLDLGCRVLTQMRDIDGKLGWMPALKGELVAEPEADEYIARAVKRDPDLWVVEIESRDGSHPFE 108
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: A0A8J7S0U9_9PROT (DUF1491 family protein n=1 Tax=Marivibrio halodurans TaxID=2039722 RepID=A0A8J7S0U9_9PROT) HSP 1 Score: 138 bits (348), Expect = 2.920e-40 Identity = 63/108 (58.33%), Postives = 79/108 (73.15%), Query Frame = 1
Query: 1 MSDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFE 324
MSDDRLPT LW+ AGL +CS A +PAVV+HKGE+ SG V++K+ R G +LTQ RD+DG LGW PA E + ADA AY+ERA +RDPDLW IE+E G +PF+
Sbjct: 1 MSDDRLPTHLWIGAGLSRCSAAGIPAVVLHKGERMSGVVLVKIARVAEGARLLTQQRDLDGVLGWVPALGSERVPEADADAYIERARARDPDLWAIEVEDPSGRNPFD 108
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: A0A7C7PEN6_9PROT (DUF1491 family protein n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A7C7PEN6_9PROT) HSP 1 Score: 137 bits (346), Expect = 5.890e-40 Identity = 58/107 (54.21%), Postives = 82/107 (76.64%), Query Frame = 1
Query: 4 SDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFE 324
+D RLP+E+W+ A L +C +PA VVH+GEKNSGT++LK+++ + G +L Q+RD+DG + W PA GE + +DA AY+ERAV+RDPD+WV+EIE REG HPF+
Sbjct: 5 ADGRLPSEVWIKAHLRRCFAEGMPATVVHRGEKNSGTLILKINQLEAGCRVLNQTRDLDGAMAWMPALGGELVKESDADAYIERAVARDPDVWVVEIEDREGRHPFD 111
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: UPI001300CBF3 (DUF1491 family protein n=1 Tax=Skermanella pratensis TaxID=2233999 RepID=UPI001300CBF3) HSP 1 Score: 137 bits (344), Expect = 1.080e-39 Identity = 63/108 (58.33%), Postives = 76/108 (70.37%), Query Frame = 1
Query: 1 MSDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFE 324
M DDR+PTELWV A + +C A+PAV+ KG G VMLKL++ + G +LTQ+RDMDGK W AK+ + ADA AY+ERAV RDPDLWVIEIE R G HPFE
Sbjct: 1 MDDDRIPTELWVRAHVRRCISEAIPAVIARKGSPYGGLVMLKLNQLEHGCRVLTQTRDMDGKTAWLAAKENTLMPEADADAYIERAVKRDPDLWVIEIEDRAGRHPFE 108
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Match: UPI0019335796 (DUF1491 family protein n=3 Tax=Skermanella TaxID=204447 RepID=UPI0019335796) HSP 1 Score: 135 bits (341), Expect = 3.100e-39 Identity = 62/108 (57.41%), Postives = 77/108 (71.30%), Query Frame = 1
Query: 1 MSDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYLILTQSRDMDGKLGWFPAKDGEALTSADASAYVERAVSRDPDLWVIEIEHREGWHPFE 324
M DDR+PTELWV A + +C A+PA VV KG G VMLKL++ ++G +LTQ+RDMDG+ W A++ + ADA AY+ERAV RDPDLWVIEIE R G HPFE
Sbjct: 1 MDDDRIPTELWVKAHVRRCVAEAIPAYVVRKGSPYGGLVMLKLNQLEQGCRVLTQTRDMDGRTAWLAARENALMPEADADAYIERAVKRDPDLWVIEIEDRAGRHPFE 108 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100992.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100992.2.1 >prot_L-digitata_M_contig100992.2.1 ID=prot_L-digitata_M_contig100992.2.1|Name=mRNA_L-digitata_M_contig100992.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=111bp MSDDRLPTELWVSAGLHQCSLAAVPAVVVHKGEKNSGTVMLKLDRFDRGYback to top mRNA from alignment at L-digitata_M_contig100992:522..854+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100992.2.1 ID=mRNA_L-digitata_M_contig100992.2.1|Name=mRNA_L-digitata_M_contig100992.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=333bp|location=Sequence derived from alignment at L-digitata_M_contig100992:522..854+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100992:522..854+ >mRNA_L-digitata_M_contig100992.2.1 ID=mRNA_L-digitata_M_contig100992.2.1|Name=mRNA_L-digitata_M_contig100992.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=333bp|location=Sequence derived from alignment at L-digitata_M_contig100992:522..854+ (Laminaria digitata LdigPH10_18mv male)back to top |