mRNA_L-digitata_M_contig100992.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100992.1.1
Unique NamemRNA_L-digitata_M_contig100992.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100992.1.1 vs. uniprot
Match: A0A2E7I5K3_9PROT (Adenylosuccinate lyase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7I5K3_9PROT)

HSP 1 Score: 277 bits (709), Expect = 1.000e-89
Identity = 134/168 (79.76%), Postives = 154/168 (91.67%), Query Frame = 1
Query:    1 RNPILTENLTGLARVVRAAVTPALENVALWHERDISHSSVERMFGPDATVTLDFALVRLTGVVEKMMIYPDAMTANMEKLGGLVHSQRVLLALTQAGLSREDSYLAVQRNAMKVWGLPEAEREGAFLSFLQSDEEVSAKISAEDLAASFDMGYHTKHVDTIFARVFGS 504
            RNPILTENLTGLARVVR+AV PA+ENVALWHERDISHSSVER  GPDATVTLDFAL RLTGVV+K+++YP+ M ANME+LGGL+HSQRVLLALTQAG+SRED+Y AVQRNAMKVW LPE +R+GAFLSFL+ DE+VSA IS ++LA SFD+GYHTKHVD IF+RVFG+
Sbjct:  269 RNPILTENLTGLARVVRSAVVPAMENVALWHERDISHSSVERFIGPDATVTLDFALARLTGVVDKLLVYPETMVANMERLGGLIHSQRVLLALTQAGMSREDAYEAVQRNAMKVWDLPEGDRDGAFLSFLKDDEKVSALISGDNLAESFDLGYHTKHVDAIFSRVFGA 436          
BLAST of mRNA_L-digitata_M_contig100992.1.1 vs. uniprot
Match: A0A2E7PJH6_9PROT (Adenylosuccinate lyase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PJH6_9PROT)

HSP 1 Score: 276 bits (706), Expect = 2.840e-89
Identity = 134/168 (79.76%), Postives = 154/168 (91.67%), Query Frame = 1
Query:    1 RNPILTENLTGLARVVRAAVTPALENVALWHERDISHSSVERMFGPDATVTLDFALVRLTGVVEKMMIYPDAMTANMEKLGGLVHSQRVLLALTQAGLSREDSYLAVQRNAMKVWGLPEAEREGAFLSFLQSDEEVSAKISAEDLAASFDMGYHTKHVDTIFARVFGS 504
            RNPILTENLTGLARVVR+AV PA+ENVALWHERDISHSSVER+ GPDATVTLDFAL+RLT VV+K+++YP+ M AN+EKLGGL+HSQRVLLALTQAG+SRED+Y AVQRNAM+VW LPEAEREGAFLSFLQ D+ VS  I+ +DLA SFD+GYHTKH+DTIF RVFG+
Sbjct:  269 RNPILTENLTGLARVVRSAVVPAMENVALWHERDISHSSVERIIGPDATVTLDFALMRLTSVVDKLLVYPETMMANVEKLGGLIHSQRVLLALTQAGMSREDAYQAVQRNAMQVWALPEAEREGAFLSFLQGDKAVSKLIAGDDLAESFDLGYHTKHLDTIFERVFGA 436          
BLAST of mRNA_L-digitata_M_contig100992.1.1 vs. uniprot
Match: A0A7C7KMH1_9PROT (Adenylosuccinate lyase n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A7C7KMH1_9PROT)

HSP 1 Score: 251 bits (640), Expect = 7.280e-80
Identity = 128/167 (76.65%), Postives = 141/167 (84.43%), Query Frame = 1
Query:    1 RNPILTENLTGLARVVRAAVTPALENVALWHERDISHSSVERMFGPDATVTLDFALVRLTGVVEKMMIYPDAMTANMEKLGGLVHSQRVLLALTQAGLSREDSYLAVQRNAMKVWGLPEAEREGAFLSFLQSDEEVSAKISAEDLAASFDMGYHTKHVDTIFARVFG 501
            RNP+LTENLTGLARVVRAAV PALENVALWHERDISHSSVERMFGPDATVTLDFAL RL GV+EK++IYP+AM  N+++LGGLVHSQRVLLALTQAG+SRED+Y  VQRNAMKVWG      EG FL+ L++D EVS  I A  L A FD  YHTKHVDTIF RVFG
Sbjct:  232 RNPVLTENLTGLARVVRAAVVPALENVALWHERDISHSSVERMFGPDATVTLDFALNRLAGVIEKLLIYPEAMQQNLDQLGGLVHSQRVLLALTQAGVSREDAYRLVQRNAMKVWG-----GEGDFLALLKADPEVSGSIEAAALEACFDPAYHTKHVDTIFRRVFG 393          
BLAST of mRNA_L-digitata_M_contig100992.1.1 vs. uniprot
Match: A0A848W455_9PROT (Adenylosuccinate lyase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W455_9PROT)

HSP 1 Score: 250 bits (639), Expect = 3.560e-79
Identity = 123/169 (72.78%), Postives = 146/169 (86.39%), Query Frame = 1
Query:    1 RNPILTENLTGLARVVRAAVTPALENVALWHERDISHSSVERMFGPDATVTLDFALVRLTGVVEKMMIYPDAMTANMEKLGGLVHSQRVLLALTQAGLSREDSYLAVQRNAMKVWGLPEAEREGAFLSFLQSDEEVSAKISAEDLAASFDMGYHTKHVDTIFARVFGSA 507
            RNPILTENLTG+AR+VRAA  PA+EN+ALWHERDISHSSVER+ GPDAT+ LDFAL RLTGVVEK+++YPDAM  N+++LGGLVHSQRV+LALTQAG++RED+Y AVQRNAM+VW L EA+R GAF  FL+ D EV+AK+    L A FDMG+HTKHVDTIF RVF +A
Sbjct:  269 RNPILTENLTGIARLVRAAAIPAMENIALWHERDISHSSVERVNGPDATIALDFALGRLTGVVEKLVVYPDAMQNNLDRLGGLVHSQRVMLALTQAGMAREDAYQAVQRNAMRVWELAEADRPGAFQRFLKDDGEVTAKLDGAALDALFDMGHHTKHVDTIFNRVFVAA 437          
BLAST of mRNA_L-digitata_M_contig100992.1.1 vs. uniprot
Match: A0A3D3UDQ1_9PROT (Adenylosuccinate lyase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3D3UDQ1_9PROT)

HSP 1 Score: 243 bits (619), Expect = 3.460e-78
Identity = 120/168 (71.43%), Postives = 145/168 (86.31%), Query Frame = 1
Query:    1 RNPILTENLTGLARVVRAAVTPALENVALWHERDISHSSVERMFGPDATVTLDFALVRLTGVVEKMMIYPDAMTANMEKLGGLVHSQRVLLALTQAGLSREDSYLAVQRNAMKVWGLPEAEREGA-FLSFLQSDEEVSAKISAEDLAASFDMGYHTKHVDTIFARVFG 501
            RNP+LTENLTGLAR+VRAAV PALENVALWHERDISHSSVERM GPDATVTLDFAL+RL G+++ +++YP+ M AN+++LGGL+HSQRVLLALTQAG+SRED+Y  VQRNAMKVW      RE A FL+ L++D EVSA + AE+LA  FD+GYHTKHV+T+F R+FG
Sbjct:  117 RNPVLTENLTGLARLVRAAVVPALENVALWHERDISHSSVERMIGPDATVTLDFALMRLKGLIDNLVVYPENMRANLDRLGGLIHSQRVLLALTQAGVSREDAYRLVQRNAMKVW------REQADFLTLLRADSEVSAALGAEELAELFDLGYHTKHVNTLFQRIFG 278          
BLAST of mRNA_L-digitata_M_contig100992.1.1 vs. uniprot
Match: A0A1G7AVJ8_9PROT (Adenylosuccinate lyase n=1 Tax=Rhodospira trueperi TaxID=69960 RepID=A0A1G7AVJ8_9PROT)

HSP 1 Score: 248 bits (633), Expect = 4.280e-78
Identity = 127/169 (75.15%), Postives = 144/169 (85.21%), Query Frame = 1
Query:    1 RNPILTENLTGLARVVRAAVTPALENVALWHERDISHSSVERMFGPDATVTLDFALVRLTGVVEKMMIYPDAMTANMEKLGGLVHSQRVLLALTQAGLSREDSYLAVQRNAMKVWGLPEAEREGAFLSFLQSDEEVSAKISAEDLAASFDMGYHTKHVDTIFARVFGSA 507
            RNPILTENLTGLARVVRAAV PALENVALWHERDISHSSVERM GPDATVTLDFAL RLTGVV+K+++YPDAMTAN+ ++ GLV SQRVLLALTQAG+SRED+Y  VQRNAM+VW     E EG  L+ L++D EVSA + AE LA  FD+ +HT+HVDTIF RVFGSA
Sbjct:  274 RNPILTENLTGLARVVRAAVVPALENVALWHERDISHSSVERMIGPDATVTLDFALARLTGVVDKLVVYPDAMTANVARMSGLVFSQRVLLALTQAGVSREDAYRLVQRNAMRVW-----EGEGDLLTLLRADTEVSAALDAEALAGLFDLDHHTRHVDTIFKRVFGSA 437          
BLAST of mRNA_L-digitata_M_contig100992.1.1 vs. uniprot
Match: A0A843RMM6_9PROT (Adenylosuccinate lyase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A843RMM6_9PROT)

HSP 1 Score: 246 bits (629), Expect = 1.200e-77
Identity = 122/167 (73.05%), Postives = 140/167 (83.83%), Query Frame = 1
Query:    1 RNPILTENLTGLARVVRAAVTPALENVALWHERDISHSSVERMFGPDATVTLDFALVRLTGVVEKMMIYPDAMTANMEKLGGLVHSQRVLLALTQAGLSREDSYLAVQRNAMKVWGLPEAEREGAFLSFLQSDEEVSAKISAEDLAASFDMGYHTKHVDTIFARVFG 501
            RNP+LTENLTGLAR+VRAAV PALENV LWHERDISHSSVERM GPD TVTLDFAL RL GVVEK+++YP+ M  N+++LGGLVHSQRVLLALTQAG+SREDSY  VQRNAMKVWG      +  FL  L++D E++ K+S++ LAA FD  YHTKHVDTIFARVFG
Sbjct:  269 RNPVLTENLTGLARLVRAAVVPALENVTLWHERDISHSSVERMIGPDTTVTLDFALSRLAGVVEKLLVYPETMQKNLDQLGGLVHSQRVLLALTQAGISREDSYRLVQRNAMKVWG-----GDADFLELLKADPEIAGKVSSQALAACFDAAYHTKHVDTIFARVFG 430          
BLAST of mRNA_L-digitata_M_contig100992.1.1 vs. uniprot
Match: A0A6N6VJG3_9HYPH (Adenylosuccinate lyase n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VJG3_9HYPH)

HSP 1 Score: 246 bits (629), Expect = 1.230e-77
Identity = 122/167 (73.05%), Postives = 142/167 (85.03%), Query Frame = 1
Query:    1 RNPILTENLTGLARVVRAAVTPALENVALWHERDISHSSVERMFGPDATVTLDFALVRLTGVVEKMMIYPDAMTANMEKLGGLVHSQRVLLALTQAGLSREDSYLAVQRNAMKVWGLPEAEREGAFLSFLQSDEEVSAKISAEDLAASFDMGYHTKHVDTIFARVFG 501
            RNP+LTENLTGLAR+VR    PA+ENVALWHERDISHSSVERM GPDATVTLDFALVRLTGV++K+++YP+ M  N++KLGGLVHSQRVLLALTQ G+SREDSY  VQRNAM VW       EG FL  L++D++VSAK+SA++L   FD+GYHTKHVDTIFARVFG
Sbjct:  272 RNPVLTENLTGLARLVRGMAIPAMENVALWHERDISHSSVERMIGPDATVTLDFALVRLTGVIDKLLVYPENMQKNLDKLGGLVHSQRVLLALTQKGVSREDSYRLVQRNAMPVW-----RGEGNFLELLKADKDVSAKLSAKELEDLFDLGYHTKHVDTIFARVFG 433          
BLAST of mRNA_L-digitata_M_contig100992.1.1 vs. uniprot
Match: UPI0019ADD390 (Adenylosuccinate lyase n=1 Tax=Novosphingobium sp. TaxID=1874826 RepID=UPI0019ADD390)

HSP 1 Score: 238 bits (608), Expect = 1.850e-77
Identity = 124/170 (72.94%), Postives = 142/170 (83.53%), Query Frame = 1
Query:    1 RNPILTENLTGLARVVRAAVTPALENVALWHERDISHSSVERMFGPDATVTLDFALVRLTGVVEKMMIYPDAMTANMEKLGGLVHSQRVLLALTQAGLSREDSYLAVQRNAMKVWGLPEAEREGAF--LSFLQSDEEVSAKISAEDLAASFDMGYHTKHVDTIFARVFGS 504
            RNPILTENLTGLAR+VR+AV PA+ENVALWHERDISHSSVER   PDAT+TLDFAL RLTGV+EK++IYP  M  N++++GGLVHSQRVLLALTQAGLSREDSYLAVQRNAMKVW     E +GA   L  L++D +VSAKIS  DL ASF++ YH   VDTIFARVFG+
Sbjct:   47 RNPILTENLTGLARMVRSAVVPAMENVALWHERDISHSSVERYIAPDATITLDFALGRLTGVIEKLLIYPVRMQKNLDRMGGLVHSQRVLLALTQAGLSREDSYLAVQRNAMKVW-----ESDGALSLLELLKADAQVSAKISDADLEASFNLDYHLARVDTIFARVFGA 211          
BLAST of mRNA_L-digitata_M_contig100992.1.1 vs. uniprot
Match: A0A0T0PUJ7_9SPHN (Adenylosuccinate lyase n=8 Tax=Sphingomonas TaxID=13687 RepID=A0A0T0PUJ7_9SPHN)

HSP 1 Score: 245 bits (626), Expect = 3.780e-77
Identity = 121/168 (72.02%), Postives = 144/168 (85.71%), Query Frame = 1
Query:    1 RNPILTENLTGLARVVRAAVTPALENVALWHERDISHSSVERMFGPDATVTLDFALVRLTGVVEKMMIYPDAMTANMEKLGGLVHSQRVLLALTQAGLSREDSYLAVQRNAMKVWGLPEAEREGAFLSFLQSDEEVSAKISAEDLAASFDMGYHTKHVDTIFARVFGS 504
            RNP+LTENLTGLAR+VR  VTPALENVALWHERDISHSSVER  GPDA +TLDFAL RLTGVV+K+++YP+ M  N++++GGLVHSQRVLLALTQAG+SREDSY  VQRNAMKVW   E++ E + L  L++D EV+A +S E++AA FD+GYH KHVDTIFARVFGS
Sbjct:  273 RNPVLTENLTGLARMVRGYVTPALENVALWHERDISHSSVERYIGPDACITLDFALARLTGVVDKLLVYPERMQKNLDRMGGLVHSQRVLLALTQAGVSREDSYRLVQRNAMKVW---ESDGELSLLELLKADPEVAAALSPEEIAAKFDLGYHFKHVDTIFARVFGS 437          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100992.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7I5K3_9PROT1.000e-8979.76Adenylosuccinate lyase n=2 Tax=Alphaproteobacteria... [more]
A0A2E7PJH6_9PROT2.840e-8979.76Adenylosuccinate lyase n=1 Tax=Rhodospirillaceae b... [more]
A0A7C7KMH1_9PROT7.280e-8076.65Adenylosuccinate lyase n=1 Tax=Kiloniellaceae bact... [more]
A0A848W455_9PROT3.560e-7972.78Adenylosuccinate lyase n=1 Tax=Alphaproteobacteria... [more]
A0A3D3UDQ1_9PROT3.460e-7871.43Adenylosuccinate lyase (Fragment) n=1 Tax=Alphapro... [more]
A0A1G7AVJ8_9PROT4.280e-7875.15Adenylosuccinate lyase n=1 Tax=Rhodospira trueperi... [more]
A0A843RMM6_9PROT1.200e-7773.05Adenylosuccinate lyase n=3 Tax=Alphaproteobacteria... [more]
A0A6N6VJG3_9HYPH1.230e-7773.05Adenylosuccinate lyase n=1 Tax=Parvibaculum sedime... [more]
UPI0019ADD3901.850e-7772.94Adenylosuccinate lyase n=1 Tax=Novosphingobium sp.... [more]
A0A0T0PUJ7_9SPHN3.780e-7772.02Adenylosuccinate lyase n=8 Tax=Sphingomonas TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100992contigL-digitata_M_contig100992:1..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog317655.Sala_1068
Preferred namepurB
PFAMsADSL_C,Lyase_1
Model size510
Max annot lvl204457|Sphingomonadales
KEGG rclassRC00379,RC00444,RC00445
KEGG koko:K01756
KEGG ReactionR01083,R04559
KEGG Pathwayko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130
KEGG ModuleM00048,M00049
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.33e-77
EggNOG OGsCOG0015@1|root,COG0015@2|Bacteria,1MV4B@1224|Proteobacteria,2TQUE@28211|Alphaproteobacteria,2K0GV@204457|Sphingomonadales
EC4.3.2.2
DescriptionBelongs to the lyase 1 family. Adenylosuccinate lyase subfamily
Cds size510
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406613.076221-CDS-L-digitata_M_contig100992:0..5101682406613.076221-CDS-L-digitata_M_contig100992:0..510Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100992 1..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100992.1.1prot_L-digitata_M_contig100992.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100992 1..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100992.1.1

>prot_L-digitata_M_contig100992.1.1 ID=prot_L-digitata_M_contig100992.1.1|Name=mRNA_L-digitata_M_contig100992.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=170bp
RNPILTENLTGLARVVRAAVTPALENVALWHERDISHSSVERMFGPDATV
TLDFALVRLTGVVEKMMIYPDAMTANMEKLGGLVHSQRVLLALTQAGLSR
EDSYLAVQRNAMKVWGLPEAEREGAFLSFLQSDEEVSAKISAEDLAASFD
MGYHTKHVDTIFARVFGSA*
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mRNA from alignment at L-digitata_M_contig100992:1..510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100992.1.1 ID=mRNA_L-digitata_M_contig100992.1.1|Name=mRNA_L-digitata_M_contig100992.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=510bp|location=Sequence derived from alignment at L-digitata_M_contig100992:1..510+ (Laminaria digitata LdigPH10_18mv male)
CGCAATCCGATCCTAACCGAGAATTTGACTGGTCTGGCCCGCGTCGTCCG CGCCGCGGTCACACCCGCCCTGGAAAACGTCGCGCTCTGGCATGAGCGGG ACATTTCCCACTCCTCCGTCGAGCGAATGTTTGGCCCGGATGCGACCGTC ACACTGGATTTTGCGCTCGTACGCCTGACCGGGGTCGTCGAGAAGATGAT GATTTATCCCGACGCCATGACGGCGAATATGGAGAAACTCGGCGGGCTCG TGCATTCCCAGCGCGTGCTTCTGGCACTGACCCAGGCCGGACTGAGCCGG GAAGATTCCTATCTGGCCGTCCAGCGCAATGCCATGAAGGTCTGGGGCCT GCCCGAAGCCGAACGCGAAGGCGCGTTTCTGTCCTTCCTGCAGTCCGACG AAGAGGTCTCGGCAAAGATCTCGGCTGAAGACCTCGCGGCGTCATTTGAC ATGGGCTACCACACCAAACATGTCGACACGATCTTCGCGCGCGTCTTCGG CAGTGCCTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100992:1..510+

>mRNA_L-digitata_M_contig100992.1.1 ID=mRNA_L-digitata_M_contig100992.1.1|Name=mRNA_L-digitata_M_contig100992.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=510bp|location=Sequence derived from alignment at L-digitata_M_contig100992:1..510+ (Laminaria digitata LdigPH10_18mv male)
CGCAATCCGATCCTAACCGAGAATTTGACTGGTCTGGCCCGCGTCGTCCG
CGCCGCGGTCACACCCGCCCTGGAAAACGTCGCGCTCTGGCATGAGCGGG
ACATTTCCCACTCCTCCGTCGAGCGAATGTTTGGCCCGGATGCGACCGTC
ACACTGGATTTTGCGCTCGTACGCCTGACCGGGGTCGTCGAGAAGATGAT
GATTTATCCCGACGCCATGACGGCGAATATGGAGAAACTCGGCGGGCTCG
TGCATTCCCAGCGCGTGCTTCTGGCACTGACCCAGGCCGGACTGAGCCGG
GAAGATTCCTATCTGGCCGTCCAGCGCAATGCCATGAAGGTCTGGGGCCT
GCCCGAAGCCGAACGCGAAGGCGCGTTTCTGTCCTTCCTGCAGTCCGACG
AAGAGGTCTCGGCAAAGATCTCGGCTGAAGACCTCGCGGCGTCATTTGAC
ATGGGCTACCACACCAAACATGTCGACACGATCTTCGCGCGCGTCTTCGG
CAGTGCCTGA
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