mRNA_L-digitata_M_contig100975.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-digitata_M_contig100975.1.1
Unique Name	mRNA_L-digitata_M_contig100975.1.1
Type	mRNA
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))

Homology

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BLAST of mRNA_L-digitata_M_contig100975.1.1 vs. uniprot
Match: A0A6H5KVX0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX0_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.860e-21
Identity = 51/119 (42.86%), Postives = 72/119 (60.50%), Query Frame = 1

Query:    4 GQQAWNALYAKCHNNSKEAPRACYEKLVNVRMEQGQDPDDYIFKLLEVRGRLHGMGERISDKRFEDILPQGLTDDYEFVKMTSFHSPNFRIDDIQSMMRNLYIDRLSRPGNINKIAGRG 360
            GQ A+  L       + E  RA  E+L N  M  G++PDDY  +   +R +L  MGE ISD+RF+DI  +G +D+Y+ VK+  F  P F + D+QS MRN+++D  SR G   +IAGRG
Sbjct:  115 GQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKYLLRTQLDKMGEAISDRRFKDICVRGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRG 233

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BLAST of mRNA_L-digitata_M_contig100975.1.1 vs. uniprot
Match: A0A6H5JLQ5_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ5_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 6.030e-21
Identity = 51/119 (42.86%), Postives = 71/119 (59.66%), Query Frame = 1

Query:    4 GQQAWNALYAKCHNNSKEAPRACYEKLVNVRMEQGQDPDDYIFKLLEVRGRLHGMGERISDKRFEDILPQGLTDDYEFVKMTSFHSPNFRIDDIQSMMRNLYIDRLSRPGNINKIAGRG 360
            GQ A+  L       + E  RA  E+L N  M  G++PDDY  +   +R +L  MGE ISD+RF+DI  QG +D+Y+ VK+     P F + D+QS MRN+++D  SR G   +IAGRG
Sbjct:   48 GQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLIVLRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRG 166

[Close]

BLAST of mRNA_L-digitata_M_contig100975.1.1 vs. uniprot
Match: A0A6H5KE37_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE37_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.670e-20
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 1

Query:    4 GQQAWNALYAKCHNNSKEAPRACYEKLVNVRMEQGQDPDDYIFKLLEVRGRLHGMGERISDKRFEDILPQGLTDDYEFVKMTSFHSPNFRIDDIQSMMRNLYIDRLSRPGNINKIAGRG 360
            GQ A+  L A  +  + E  RA  + L    ME G++PDD+  K   +R +L  MGE ISD+RF+DI  QG ++DY+ +KM  F  P+F +  +Q++MRN+++D   R     +IAGRG
Sbjct:  136 GQAAFAQLKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFNVQQMQAVMRNIFLDEQMRKRTKGQIAGRG 254

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BLAST of mRNA_L-digitata_M_contig100975.1.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.270e-20
Identity = 51/119 (42.86%), Postives = 72/119 (60.50%), Query Frame = 1

Query:    4 GQQAWNALYAKCHNNSKEAPRACYEKLVNVRMEQGQDPDDYIFKLLEVRGRLHGMGERISDKRFEDILPQGLTDDYEFVKMTSFHSPNFRIDDIQSMMRNLYIDRLSRPGNINKIAGRG 360
            GQ A+  L       + E  RA  E+L N  M  G++PD+Y  +   +R +L  MGE ISD+RF+DI  QG +D+Y+ VK+  F  P F + D+QS MRN+++D  SR G   +IAGRG
Sbjct:  115 GQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDNYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRG 233

[Close]

BLAST of mRNA_L-digitata_M_contig100975.1.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.570e-19
Identity = 51/119 (42.86%), Postives = 71/119 (59.66%), Query Frame = 1

Query:    4 GQQAWNALYAKCHNNSKEAPRACYEKLVNVRMEQGQDPDDYIFKLLEVRGRLHGMGERISDKRFEDILPQGLTDDYEFVKMTSFHSPNFRIDDIQSMMRNLYIDRLSRPGNINKIAGRG 360
            GQ A+  L       + E  R   E+L N  M  G++PDDY  +   +R +L  MGE ISD+RF+DI  QG +D+Y+ VK+  F  P F + D+QS MRN+++D  SR G   +IAGRG
Sbjct:   91 GQAAFEELCNNYDRVTDEVIRTKMEELENNPMNLGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRG 209

[Close]

BLAST of mRNA_L-digitata_M_contig100975.1.1 vs. uniprot
Match: A0A6H5K0G3_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G3_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.020e-19
Identity = 52/119 (43.70%), Postives = 71/119 (59.66%), Query Frame = 1

Query:    4 GQQAWNALYAKCHNNSKEAPRACYEKLVNVRMEQGQDPDDYIFKLLEVRGRLHGMGERISDKRFEDILPQGLTDDYEFVKMTSFHSPNFRIDDIQSMMRNLYIDRLSRPGNINKIAGRG 360
            GQ A   L       + E  RA  E+L N  M  G+DPDDY  +   +R +L  MGE ISD+RF+DI  QG++D+++ VK+  F  P F + D+QS MRN+++D  SR G    IAGRG
Sbjct:   51 GQAACEELCNNYDRVTDEVIRAKMEELENNPMNPGEDPDDYCNQKHLLRTQLDTMGEPISDRRFKDICVQGISDEHKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGCIAGRG 169

[Close]

BLAST of mRNA_L-digitata_M_contig100975.1.1 vs. uniprot
Match: A0A6H5JZ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ53_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.270e-18
Identity = 46/95 (48.42%), Postives = 62/95 (65.26%), Query Frame = 1

Query:   76 EKLVNVRMEQGQDPDDYIFKLLEVRGRLHGMGERISDKRFEDILPQGLTDDYEFVKMTSFHSPNFRIDDIQSMMRNLYIDRLSRPGNINKIAGRG 360
            E+L N  M  G++PDDY  +   +  +L  MGE ISD+RF+DI  QG +D+YE VK+  F  P F + D+QS MRN+Y+D  SR G   +IAGRG
Sbjct:    2 EELENNPMNPGENPDDYFNQKHPLCVQLDKMGEPISDRRFKDICVQGFSDEYEDVKLMLFRDPTFNVLDMQSTMRNIYLDEQSRKGWKGRIAGRG 96

[Close]

BLAST of mRNA_L-digitata_M_contig100975.1.1 vs. uniprot
Match: A0A6H5JKH7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH7_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.610e-18
Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = 1

Query:   76 EKLVNVRMEQGQDPDDYIFKLLEVRGRLHGMGERISDKRFEDILPQGLTDDYEFVKMTSFHSPNFRIDDIQSMMRNLYIDRLSRPGNINKIAGRG 360
            E+L N  M  G++PDDY  +   +R +L  MGE ISD+RF+DI  QG +D+Y+ VK+  F  P F + D+QS MRN+++D  SR G   +IAGRG
Sbjct:    2 EELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFSVLDMQSTMRNIFLDEQSRKGWKGRIAGRG 96

[Close]

BLAST of mRNA_L-digitata_M_contig100975.1.1 vs. uniprot
Match: A0A6H5KZM5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM5_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 6.980e-18
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 1

Query:   76 EKLVNVRMEQGQDPDDYIFKLLEVRGRLHGMGERISDKRFEDILPQGLTDDYEFVKMTSFHSPNFRIDDIQSMMRNLYIDRLSRPGNINKIAGRG 360
            E+L N  M  G++PDDY  +   +R +L  MGE ISD+RF+DI  QG +D+Y+ VK+  F  P F + D+QS MRN+++D  SR     +IAGRG
Sbjct:    2 EELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKEWKGRIAGRG 96

[Close]

BLAST of mRNA_L-digitata_M_contig100975.1.1 vs. uniprot
Match: A0A6H5L2I7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.320e-17
Identity = 44/110 (40.00%), Postives = 66/110 (60.00%), Query Frame = 1

Query:    4 GQQAWNALYAKCHNNSKEAPRACYEKLVNVRMEQGQDPDDYIFKLLEVRGRLHGMGERISDKRFEDILPQGLTDDYEFVKMTSFHSPNFRIDDIQSMMRNLYIDRLSRPG 333
            GQ ++  L       + E  RA  E+L N  M  G++PDDY  +   +R +L  MGE ISD+RF+DI  QG +D+Y+ VK+  F  P F + ++QS +RN+++D  SR G
Sbjct:   72 GQASFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLVVFRDPTFNVLNMQSTVRNIFLDEQSRKG 181

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig100975.1.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig100975.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18


Match Name	E-value	Identity	Description
A0A6H5KVX0_9PHAE	3.860e-21	42.86	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JLQ5_9PHAE	6.030e-21	42.86	CCHC-type domain-containing protein (Fragment) n=1...	[more]
A0A6H5KE37_9PHAE	4.670e-20	40.34	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JF66_9PHAE	6.270e-20	42.86	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5KT84_9PHAE	1.570e-19	42.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K0G3_9PHAE	3.020e-19	43.70	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JZ53_9PHAE	1.270e-18	48.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JKH7_9PHAE	2.610e-18	47.37	gag_pre-integrs domain-containing protein n=1 Tax=...	[more]
A0A6H5KZM5_9PHAE	6.980e-18	46.32	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5L2I7_9PHAE	2.320e-17	40.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig100975	contig	L-digitata_M_contig100975:537..899 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	363
Hectar predicted targeting category	other localisation
Exons	1
Cds size	363

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682406612.8494644-CDS-L-digitata_M_contig100975:536..899	1682406612.8494644-CDS-L-digitata_M_contig100975:536..899	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig100975 537..899 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig100975.1.1	prot_L-digitata_M_contig100975.1.1	Laminaria digitata LdigPH10_18mv male	polypeptide	L-digitata_M_contig100975 537..899 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-digitata_M_contig100975:537..899+
coding sequence from alignment at L-digitata_M_contig100975:537..899+

protein sequence of mRNA_L-digitata_M_contig100975.1.1

>prot_L-digitata_M_contig100975.1.1 ID=prot_L-digitata_M_contig100975.1.1|Name=mRNA_L-digitata_M_contig100975.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=121bp
NGQQAWNALYAKCHNNSKEAPRACYEKLVNVRMEQGQDPDDYIFKLLEVR
GRLHGMGERISDKRFEDILPQGLTDDYEFVKMTSFHSPNFRIDDIQSMMR
NLYIDRLSRPGNINKIAGRGA

mRNA from alignment at L-digitata_M_contig100975:537..899+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-digitata_M_contig100975.1.1 ID=mRNA_L-digitata_M_contig100975.1.1|Name=mRNA_L-digitata_M_contig100975.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=363bp|location=Sequence derived from alignment at L-digitata_M_contig100975:537..899+ (Laminaria digitata LdigPH10_18mv male)
AACGGACAGCAGGCGTGGAATGCTCTGTACGCCAAATGCCACAACAACAG
CAAGGAGGCACCGCGGGCCTGCTACGAGAAGCTAGTGAACGTTCGGATGG
AGCAAGGACAGGACCCTGACGACTACATCTTCAAGCTACTTGAGGTTCGA
GGGCGACTTCATGGAATGGGAGAGAGGATCTCGGACAAGAGGTTTGAAGA
CATCCTACCGCAGGGACTCACCGACGACTACGAGTTCGTAAAAATGACGA
GCTTCCACAGCCCAAACTTTCGAATCGACGACATCCAATCGATGATGAGA
AACCTTTACATCGACCGACTGTCGAGACCAGGCAACATCAACAAGATTGC
CGGTAGAGGAGCC

Coding sequence (CDS) from alignment at L-digitata_M_contig100975:537..899+

>mRNA_L-digitata_M_contig100975.1.1 ID=mRNA_L-digitata_M_contig100975.1.1|Name=mRNA_L-digitata_M_contig100975.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=363bp|location=Sequence derived from alignment at L-digitata_M_contig100975:537..899+ (Laminaria digitata LdigPH10_18mv male)
AACGGACAGCAGGCGTGGAATGCTCTGTACGCCAAATGCCACAACAACAG
CAAGGAGGCACCGCGGGCCTGCTACGAGAAGCTAGTGAACGTTCGGATGG
AGCAAGGACAGGACCCTGACGACTACATCTTCAAGCTACTTGAGGTTCGA
GGGCGACTTCATGGAATGGGAGAGAGGATCTCGGACAAGAGGTTTGAAGA
CATCCTACCGCAGGGACTCACCGACGACTACGAGTTCGTAAAAATGACGA
GCTTCCACAGCCCAAACTTTCGAATCGACGACATCCAATCGATGATGAGA
AACCTTTACATCGACCGACTGTCGAGACCAGGCAACATCAACAAGATTGC
CGGTAGAGGAGCC