mRNA_L-digitata_M_contig100944.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100944.1.1
Unique NamemRNA_L-digitata_M_contig100944.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100944.1.1 vs. uniprot
Match: UPI001C657F1A (hypothetical protein n=1 Tax=Shewanella sp. FJAT-53749 TaxID=2864206 RepID=UPI001C657F1A)

HSP 1 Score: 90.9 bits (224), Expect = 5.690e-20
Identity = 43/116 (37.07%), Postives = 71/116 (61.21%), Query Frame = 1 
Query:    7 VYTLQPGETRNIQTPSKFLSILELDGLLSVASSSYGLKPLRVKPGWQLELDGIPEVAIENVDAQAVTVELQDAGVRISGGGGGSVSITNKPVIKRIEEPLDFQANVTFNGGAVELI 354
            + TLQ GETR   T  ++ +++       +++S+ GL   ++K GW ++L+  P V IEN  +  +T+ELQ + ++I+  GG SVSI+NKP+I+RIEE +   A  T   G V ++
Sbjct:    2 IITLQAGETRLFPTAGRYFNVIAASDTFELSNSALGLAANQIKAGWIVDLEKYPSVDIENKHSYPITLELQSSQLKINAAGGESVSISNKPIIQRIEESIRVDAQATVENGTVHVV 117
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BLAST of mRNA_L-digitata_M_contig100944.1.1 vs. uniprot
Match: UPI001C09CC4F (hypothetical protein n=1 Tax=Aestuariibacter sp. A3R04 TaxID=2841571 RepID=UPI001C09CC4F)

HSP 1 Score: 77.4 bits (189), Expect = 8.370e-15
Identity = 47/123 (38.21%), Postives = 67/123 (54.47%), Query Frame = 1 
Query:    1 MAVYTLQPGETRNIQTPSKFLSILELDGLLSVASSSYGLKPLRVKPGWQLELDGIPEVAIENVDAQAVTVELQDAGVRISGGGGGSVSITNKPVIKRIEEPLDFQANVTFNGGAVELISSNNL 369
            M + T+  G+ R IQTP+K+LS++  +G   V + + G   +  K G Q  LD I EV   N     + +E + A ++I G G GSVSI NKP I+RIEE +   A  T   G V   S ++L
Sbjct:    1 MPIVTIAAGKERVIQTPAKYLSVIGANGQFVVNAPALG--NVIGKIGRQYVLDNITEVLFINDSGDPIEIEYEIANIQIFGSGSGSVSIENKPTIRRIEEAIQVNAAATVENGTVTAQSHDSL 121
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100944.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001C657F1A5.690e-2037.07hypothetical protein n=1 Tax=Shewanella sp. FJAT-5... [more]
UPI001C09CC4F8.370e-1538.21hypothetical protein n=1 Tax=Aestuariibacter sp. A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100944contigL-digitata_M_contig100944:473..886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size414
Hectar predicted targeting categoryother localisation
Exons1
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406612.6430228-CDS-L-digitata_M_contig100944:472..8861682406612.6430228-CDS-L-digitata_M_contig100944:472..886Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100944 473..886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100944.1.1prot_L-digitata_M_contig100944.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100944 473..886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100944.1.1

>prot_L-digitata_M_contig100944.1.1 ID=prot_L-digitata_M_contig100944.1.1|Name=mRNA_L-digitata_M_contig100944.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=138bp
MAVYTLQPGETRNIQTPSKFLSILELDGLLSVASSSYGLKPLRVKPGWQL
ELDGIPEVAIENVDAQAVTVELQDAGVRISGGGGGSVSITNKPVIKRIEE
PLDFQANVTFNGGAVELISSNNLNTLADKVCAINAMTQ
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mRNA from alignment at L-digitata_M_contig100944:473..886+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100944.1.1 ID=mRNA_L-digitata_M_contig100944.1.1|Name=mRNA_L-digitata_M_contig100944.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=414bp|location=Sequence derived from alignment at L-digitata_M_contig100944:473..886+ (Laminaria digitata LdigPH10_18mv male)
ATGGCCGTTTATACATTACAACCGGGAGAAACCCGGAACATTCAAACGCC
GAGCAAGTTTCTATCCATTTTAGAATTAGATGGGTTGTTGTCGGTGGCTT
CATCCAGCTACGGATTAAAGCCGCTACGGGTTAAACCGGGTTGGCAATTA
GAGTTAGACGGAATACCGGAAGTCGCAATCGAAAACGTAGACGCGCAAGC
GGTCACGGTAGAATTGCAAGACGCTGGAGTGAGAATATCAGGCGGGGGTG
GTGGTTCGGTTTCTATTACGAATAAACCCGTAATTAAGCGCATTGAAGAG
CCGCTCGACTTTCAAGCCAACGTGACATTTAACGGCGGCGCGGTTGAACT
GATTAGTTCGAATAACTTGAACACGTTAGCCGATAAAGTGTGCGCCATTA
ATGCCATGACACAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100944:473..886+

>mRNA_L-digitata_M_contig100944.1.1 ID=mRNA_L-digitata_M_contig100944.1.1|Name=mRNA_L-digitata_M_contig100944.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=414bp|location=Sequence derived from alignment at L-digitata_M_contig100944:473..886+ (Laminaria digitata LdigPH10_18mv male)
ATGGCCGTTTATACATTACAACCGGGAGAAACCCGGAACATTCAAACGCC
GAGCAAGTTTCTATCCATTTTAGAATTAGATGGGTTGTTGTCGGTGGCTT
CATCCAGCTACGGATTAAAGCCGCTACGGGTTAAACCGGGTTGGCAATTA
GAGTTAGACGGAATACCGGAAGTCGCAATCGAAAACGTAGACGCGCAAGC
GGTCACGGTAGAATTGCAAGACGCTGGAGTGAGAATATCAGGCGGGGGTG
GTGGTTCGGTTTCTATTACGAATAAACCCGTAATTAAGCGCATTGAAGAG
CCGCTCGACTTTCAAGCCAACGTGACATTTAACGGCGGCGCGGTTGAACT
GATTAGTTCGAATAACTTGAACACGTTAGCCGATAAAGTGTGCGCCATTA
ATGCCATGACACAA
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