mRNA_L-digitata_M_contig100923.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100923.1.1
Unique NamemRNA_L-digitata_M_contig100923.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100923.1.1 vs. uniprot
Match: A0A7C1RCZ6_9HYPH (Ligase-associated DNA damage response exonuclease n=3 Tax=root TaxID=1 RepID=A0A7C1RCZ6_9HYPH)

HSP 1 Score: 229 bits (585), Expect = 7.820e-73
Identity = 111/138 (80.43%), Postives = 117/138 (84.78%), Query Frame = 1
Query:    1 MRFDDLLHPTPEGLYCPPGDFYIDPVKPVARALITHGHADHARPGHTSVLASRQTLDIMALRYGEAHADNTQDIAYGTKQAIGDVSVSFHPAGHVLGSAQIAVNYKGKRIVASGDYKRADDPTCLSFEPVPCDVFITE 414
            M+ DDLLHPTPEGLYCPPGDFYIDPV+PVARAL+THGHADHARPG+ SVLA+RQTLDIMALRYGEA     Q  A G    IGDVSVSFHPAGHVLGSAQIAV +KG RIVASGDYKR  DPTC  FEPV CDVFITE
Sbjct:    1 MKPDDLLHPTPEGLYCPPGDFYIDPVRPVARALVTHGHADHARPGNHSVLATRQTLDIMALRYGEAFCAERQTAALGETIRIGDVSVSFHPAGHVLGSAQIAVEHKGLRIVASGDYKRRPDPTCAGFEPVACDVFITE 138          
BLAST of mRNA_L-digitata_M_contig100923.1.1 vs. uniprot
Match: A0A4R5PML5_9HYPH (Ligase-associated DNA damage response exonuclease n=3 Tax=Hyphomicrobiales TaxID=356 RepID=A0A4R5PML5_9HYPH)

HSP 1 Score: 222 bits (565), Expect = 8.750e-70
Identity = 105/137 (76.64%), Postives = 114/137 (83.21%), Query Frame = 1
Query:    4 RFDDLLHPTPEGLYCPPGDFYIDPVKPVARALITHGHADHARPGHTSVLASRQTLDIMALRYGEAHADNTQDIAYGTKQAIGDVSVSFHPAGHVLGSAQIAVNYKGKRIVASGDYKRADDPTCLSFEPVPCDVFITE 414
            RF+DLLHP PEGLYCPPGDFYIDPV+PV RALITHGHADHARPGH+ V+A+ QTLDIMA+RYG  HA  TQ   YG    IGDVSV FHPAGHVLGSAQIAV ++G RIVASGDYK   DPTC +FEPV CDVFITE
Sbjct:    4 RFEDLLHPRPEGLYCPPGDFYIDPVRPVERALITHGHADHARPGHSHVMATGQTLDIMAIRYGADHARTTQPAEYGEIIDIGDVSVRFHPAGHVLGSAQIAVEWQGMRIVASGDYKPRPDPTCAAFEPVDCDVFITE 140          
BLAST of mRNA_L-digitata_M_contig100923.1.1 vs. uniprot
Match: A0A0Q6F8A9_9HYPH (DNA ligase-associated DEXH box helicase n=1 Tax=Aurantimonas sp. Leaf443 TaxID=1736378 RepID=A0A0Q6F8A9_9HYPH)

HSP 1 Score: 221 bits (563), Expect = 2.030e-69
Identity = 102/137 (74.45%), Postives = 115/137 (83.94%), Query Frame = 1
Query:    4 RFDDLLHPTPEGLYCPPGDFYIDPVKPVARALITHGHADHARPGHTSVLASRQTLDIMALRYGEAHADNTQDIAYGTKQAIGDVSVSFHPAGHVLGSAQIAVNYKGKRIVASGDYKRADDPTCLSFEPVPCDVFITE 414
            RF+DLL PTP+GLYCPPGDFYIDPV+PV RAL+THGHADHARPG T V+ASRQTL+IMA+RYGEA +   Q+ A G + A+  V+VSFHPAGHVLGS QIAV + G RIVASGDYKR  DPTC  FEPVPCDVFITE
Sbjct:    3 RFEDLLRPTPQGLYCPPGDFYIDPVRPVERALVTHGHADHARPGSTHVMASRQTLEIMAIRYGEAFSQTRQEAAIGERVAVNGVTVSFHPAGHVLGSCQIAVEWGGMRIVASGDYKRRHDPTCAGFEPVPCDVFITE 139          
BLAST of mRNA_L-digitata_M_contig100923.1.1 vs. uniprot
Match: A0A6N9T450_9HYPH (Ligase-associated DNA damage response exonuclease n=2 Tax=Jiella pacifica TaxID=2696469 RepID=A0A6N9T450_9HYPH)

HSP 1 Score: 221 bits (562), Expect = 2.340e-69
Identity = 106/138 (76.81%), Postives = 115/138 (83.33%), Query Frame = 1
Query:    1 MRFDDLLHPTPEGLYCPPGDFYIDPVKPVARALITHGHADHARPGHTSVLASRQTLDIMALRYGEAHADNTQDIAYGTKQAIGDVSVSFHPAGHVLGSAQIAVNYKGKRIVASGDYKRADDPTCLSFEPVPCDVFITE 414
            MR +DLL P PEGLYCPPGDFYIDPV+PV RAL+THGHADHARPG+  V+A+ QTLDIMALRYGE      Q    G K  IGDV+VSFHPAGHVLGSAQIAV++KG RIVASGDYKR  DPTCLSFEPVPCDVFITE
Sbjct:    1 MRPEDLLRPMPEGLYCPPGDFYIDPVRPVERALVTHGHADHARPGNARVMATGQTLDIMALRYGEEFCAERQVAELGEKIRIGDVTVSFHPAGHVLGSAQIAVDWKGTRIVASGDYKRRADPTCLSFEPVPCDVFITE 138          
BLAST of mRNA_L-digitata_M_contig100923.1.1 vs. uniprot
Match: A0A1Q4APC1_9HYPH (DNA ligase-associated DEXH box helicase n=1 Tax=Mesorhizobium sp. 65-26 TaxID=1895781 RepID=A0A1Q4APC1_9HYPH)

HSP 1 Score: 220 bits (560), Expect = 4.700e-69
Identity = 106/138 (76.81%), Postives = 113/138 (81.88%), Query Frame = 1
Query:    1 MRFDDLLHPTPEGLYCPPGDFYIDPVKPVARALITHGHADHARPGHTSVLASRQTLDIMALRYGEAHADNTQDIAYGTKQAIGDVSVSFHPAGHVLGSAQIAVNYKGKRIVASGDYKRADDPTCLSFEPVPCDVFITE 414
            MR  DLLHP PEGLYCPPGDF+IDPVKPV RAL+THGH+DHARPGH SVLA+RQTLDIM LR G   A  TQ    G + AIG+VSVSFHPAGHVLGSAQIAV +KG RIVASGDYKR  D TC  FEPVPCDVFITE
Sbjct:    1 MRASDLLHPRPEGLYCPPGDFFIDPVKPVDRALVTHGHSDHARPGHRSVLATRQTLDIMGLRLGPQFAGTTQAAVPGERIAIGEVSVSFHPAGHVLGSAQIAVEHKGTRIVASGDYKRQRDATCAPFEPVPCDVFITE 138          
BLAST of mRNA_L-digitata_M_contig100923.1.1 vs. uniprot
Match: A0A4Y8RPS9_9HYPH (Ligase-associated DNA damage response exonuclease n=7 Tax=Aurantimonadaceae TaxID=255475 RepID=A0A4Y8RPS9_9HYPH)

HSP 1 Score: 219 bits (559), Expect = 6.660e-69
Identity = 104/138 (75.36%), Postives = 115/138 (83.33%), Query Frame = 1
Query:    1 MRFDDLLHPTPEGLYCPPGDFYIDPVKPVARALITHGHADHARPGHTSVLASRQTLDIMALRYGEAHADNTQDIAYGTKQAIGDVSVSFHPAGHVLGSAQIAVNYKGKRIVASGDYKRADDPTCLSFEPVPCDVFITE 414
            M+ +DLL PTPEGLYCPPG F+IDPV+PV RAL+THGHADHARPG+  V+A+RQTLDIMALRYGE  A   Q    G KQ IGDV+VSFHPAGHVLGSAQIAV ++G RIVASGDYKR  DPTC  FEPVPCDVFITE
Sbjct:    1 MKPEDLLRPTPEGLYCPPGGFFIDPVRPVERALVTHGHADHARPGNQKVMATRQTLDIMALRYGEDFASERQVAELGEKQRIGDVTVSFHPAGHVLGSAQIAVEWQGLRIVASGDYKRRADPTCAGFEPVPCDVFITE 138          
BLAST of mRNA_L-digitata_M_contig100923.1.1 vs. uniprot
Match: UPI001A90EF42 (ligase-associated DNA damage response exonuclease n=1 Tax=unclassified Jiella TaxID=2643868 RepID=UPI001A90EF42)

HSP 1 Score: 218 bits (555), Expect = 2.750e-68
Identity = 104/138 (75.36%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 MRFDDLLHPTPEGLYCPPGDFYIDPVKPVARALITHGHADHARPGHTSVLASRQTLDIMALRYGEAHADNTQDIAYGTKQAIGDVSVSFHPAGHVLGSAQIAVNYKGKRIVASGDYKRADDPTCLSFEPVPCDVFITE 414
            ++ ++LL PTPEGLYCPPGDF+IDP++PV RALITHGHADHARPG   VLA+RQTLDIMALRYGE  A   Q + +G    IGDV+VSFHPAGHVLGSAQIAV +KG RIVASGDYKR  DPTCL FEPVPCDVFITE
Sbjct:    2 IKPENLLRPTPEGLYCPPGDFFIDPIRPVERALITHGHADHARPGSGKVLATRQTLDIMALRYGENFARERQAVGWGEALRIGDVTVSFHPAGHVLGSAQIAVAHKGLRIVASGDYKRRVDPTCLPFEPVPCDVFITE 139          
BLAST of mRNA_L-digitata_M_contig100923.1.1 vs. uniprot
Match: A0A2S0XR77_9HYPH (Ribonuclease n=3 Tax=Aminobacter TaxID=31988 RepID=A0A2S0XR77_9HYPH)

HSP 1 Score: 216 bits (551), Expect = 1.080e-67
Identity = 102/138 (73.91%), Postives = 115/138 (83.33%), Query Frame = 1
Query:    1 MRFDDLLHPTPEGLYCPPGDFYIDPVKPVARALITHGHADHARPGHTSVLASRQTLDIMALRYGEAHADNTQDIAYGTKQAIGDVSVSFHPAGHVLGSAQIAVNYKGKRIVASGDYKRADDPTCLSFEPVPCDVFITE 414
            MR  DLLHP PEGLYCPPGDFYIDPV+PV RALITHGH+DHARPGH  VLA+R+TLDIMA+R G   A +TQ +A G K  +GDV+VSFHPAGHVLGSAQI+V + G RIVASGDYKRA DPTC +FE V CDVFI+E
Sbjct:    1 MRARDLLHPRPEGLYCPPGDFYIDPVRPVERALITHGHSDHARPGHAKVLATRETLDIMAIRCGPGFAGSTQAMALGDKIKVGDVTVSFHPAGHVLGSAQISVQHNGLRIVASGDYKRASDPTCAAFEVVACDVFISE 138          
BLAST of mRNA_L-digitata_M_contig100923.1.1 vs. uniprot
Match: UPI0006488E0E (ligase-associated DNA damage response exonuclease n=1 Tax=Mesorhizobium sp. F7 TaxID=1574409 RepID=UPI0006488E0E)

HSP 1 Score: 216 bits (549), Expect = 2.160e-67
Identity = 105/138 (76.09%), Postives = 109/138 (78.99%), Query Frame = 1
Query:    1 MRFDDLLHPTPEGLYCPPGDFYIDPVKPVARALITHGHADHARPGHTSVLASRQTLDIMALRYGEAHADNTQDIAYGTKQAIGDVSVSFHPAGHVLGSAQIAVNYKGKRIVASGDYKRADDPTCLSFEPVPCDVFITE 414
            MR  DLL P PEGLYCPPGDFYIDPV  V RALITHGH+DHARPGH SVLA+RQTLDIMALRYGE  A  TQ  A+G    +  V V FHPAGHVLGSAQIAV Y G RIVASGDYKRA DPTC  FEPV CDVFITE
Sbjct:    1 MRAQDLLKPRPEGLYCPPGDFYIDPVGQVGRALITHGHSDHARPGHASVLATRQTLDIMALRYGEGFAGTTQAAAFGEAIVVNGVRVVFHPAGHVLGSAQIAVEYDGLRIVASGDYKRAPDPTCAHFEPVKCDVFITE 138          
BLAST of mRNA_L-digitata_M_contig100923.1.1 vs. uniprot
Match: UPI0012608606 (ligase-associated DNA damage response exonuclease n=1 Tax=Aureimonas psammosilenae TaxID=2495496 RepID=UPI0012608606)

HSP 1 Score: 216 bits (549), Expect = 2.220e-67
Identity = 104/137 (75.91%), Postives = 112/137 (81.75%), Query Frame = 1
Query:    4 RFDDLLHPTPEGLYCPPGDFYIDPVKPVARALITHGHADHARPGHTSVLASRQTLDIMALRYGEAHADNTQDIAYGTKQAIGDVSVSFHPAGHVLGSAQIAVNYKGKRIVASGDYKRADDPTCLSFEPVPCDVFITE 414
            RF+DLL PTP+GLYCPPGDFYIDPV+PV RAL+THGHADHARPG+ SVLA+ QTLDIMA+RYGE      Q    G    IG+VSVSFHPAGHVLGSAQIAV   G RIVASGDYKR  DPTCL FEPVPCDVFITE
Sbjct:    3 RFEDLLRPTPKGLYCPPGDFYIDPVRPVERALVTHGHADHARPGNESVLATSQTLDIMAIRYGEEFCQRRQVAELGEVIRIGEVSVSFHPAGHVLGSAQIAVEMGGTRIVASGDYKRRLDPTCLPFEPVPCDVFITE 139          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100923.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C1RCZ6_9HYPH7.820e-7380.43Ligase-associated DNA damage response exonuclease ... [more]
A0A4R5PML5_9HYPH8.750e-7076.64Ligase-associated DNA damage response exonuclease ... [more]
A0A0Q6F8A9_9HYPH2.030e-6974.45DNA ligase-associated DEXH box helicase n=1 Tax=Au... [more]
A0A6N9T450_9HYPH2.340e-6976.81Ligase-associated DNA damage response exonuclease ... [more]
A0A1Q4APC1_9HYPH4.700e-6976.81DNA ligase-associated DEXH box helicase n=1 Tax=Me... [more]
A0A4Y8RPS9_9HYPH6.660e-6975.36Ligase-associated DNA damage response exonuclease ... [more]
UPI001A90EF422.750e-6875.36ligase-associated DNA damage response exonuclease ... [more]
A0A2S0XR77_9HYPH1.080e-6773.91Ribonuclease n=3 Tax=Aminobacter TaxID=31988 RepID... [more]
UPI0006488E0E2.160e-6776.09ligase-associated DNA damage response exonuclease ... [more]
UPI00126086062.220e-6775.91ligase-associated DNA damage response exonuclease ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100923contigL-digitata_M_contig100923:521..934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1297569.MESS2_1030148
Preferred nameMA20_22065
PFAMsLactamase_B
Model size414
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07577
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.85e-67
EggNOG OGsCOG1236@1|root,COG1236@2|Bacteria,1MV7U@1224|Proteobacteria,2TQU5@28211|Alphaproteobacteria,43HAN@69277|Phyllobacteriaceae
Descriptionexonuclease of the beta-lactamase fold involved in RNA processing
Cds size414
COG categoryJ
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406612.5014734-CDS-L-digitata_M_contig100923:520..9341682406612.5014734-CDS-L-digitata_M_contig100923:520..934Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100923 521..934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100923.1.1prot_L-digitata_M_contig100923.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100923 521..934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100923.1.1

>prot_L-digitata_M_contig100923.1.1 ID=prot_L-digitata_M_contig100923.1.1|Name=mRNA_L-digitata_M_contig100923.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=138bp
MRFDDLLHPTPEGLYCPPGDFYIDPVKPVARALITHGHADHARPGHTSVL
ASRQTLDIMALRYGEAHADNTQDIAYGTKQAIGDVSVSFHPAGHVLGSAQ
IAVNYKGKRIVASGDYKRADDPTCLSFEPVPCDVFITE
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mRNA from alignment at L-digitata_M_contig100923:521..934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100923.1.1 ID=mRNA_L-digitata_M_contig100923.1.1|Name=mRNA_L-digitata_M_contig100923.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=414bp|location=Sequence derived from alignment at L-digitata_M_contig100923:521..934+ (Laminaria digitata LdigPH10_18mv male)
ATGCGTTTTGACGATTTGCTGCATCCAACTCCCGAAGGGCTTTATTGCCC GCCGGGTGATTTTTATATTGATCCCGTAAAGCCGGTTGCGCGCGCTTTGA TCACCCACGGCCATGCGGATCATGCCCGACCGGGCCACACATCTGTGCTG GCGAGCCGGCAGACGCTGGATATCATGGCTTTGCGCTATGGCGAGGCGCA CGCTGACAACACACAGGACATTGCCTATGGCACAAAGCAGGCCATCGGTG ATGTCAGCGTCTCGTTTCATCCGGCAGGCCATGTTCTTGGATCGGCTCAA ATTGCTGTCAATTACAAGGGCAAACGAATTGTGGCGTCGGGCGACTACAA GCGCGCCGATGATCCAACTTGCCTGTCGTTCGAGCCGGTGCCCTGTGATG TGTTCATCACCGAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100923:521..934+

>mRNA_L-digitata_M_contig100923.1.1 ID=mRNA_L-digitata_M_contig100923.1.1|Name=mRNA_L-digitata_M_contig100923.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=414bp|location=Sequence derived from alignment at L-digitata_M_contig100923:521..934+ (Laminaria digitata LdigPH10_18mv male)
ATGCGTTTTGACGATTTGCTGCATCCAACTCCCGAAGGGCTTTATTGCCC
GCCGGGTGATTTTTATATTGATCCCGTAAAGCCGGTTGCGCGCGCTTTGA
TCACCCACGGCCATGCGGATCATGCCCGACCGGGCCACACATCTGTGCTG
GCGAGCCGGCAGACGCTGGATATCATGGCTTTGCGCTATGGCGAGGCGCA
CGCTGACAACACACAGGACATTGCCTATGGCACAAAGCAGGCCATCGGTG
ATGTCAGCGTCTCGTTTCATCCGGCAGGCCATGTTCTTGGATCGGCTCAA
ATTGCTGTCAATTACAAGGGCAAACGAATTGTGGCGTCGGGCGACTACAA
GCGCGCCGATGATCCAACTTGCCTGTCGTTCGAGCCGGTGCCCTGTGATG
TGTTCATCACCGAA
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