mRNA_L-digitata_M_contig100900.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100900.1.1
Unique NamemRNA_L-digitata_M_contig100900.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100900.1.1 vs. uniprot
Match: D7FZQ4_ECTSI (Helicase ATP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZQ4_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.680e-29
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 VAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGKDPQYPTIALHRALSGK 180
            VAQQMSGRAGRRGLDTQGNLLYMNM+WPKIQGLMLGDIPAIVG+DPQYPTIALH ALS +
Sbjct:  840 VAQQMSGRAGRRGLDTQGNLLYMNMAWPKIQGLMLGDIPAIVGQDPQYPTIALHHALSAE 899
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BLAST of mRNA_L-digitata_M_contig100900.1.1 vs. uniprot
Match: A0A836CAV0_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV0_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.130e-24
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 VAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGKDPQYPTIALHRALS 174
            +AQQMSGRAGRRGLDTQGNLL+MNMSWP+IQ LMLG IPAI G+DPQYPT+AL  ALS
Sbjct:  777 LAQQMSGRAGRRGLDTQGNLLFMNMSWPRIQYLMLGTIPAIQGQDPQYPTVALQHALS 834
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BLAST of mRNA_L-digitata_M_contig100900.1.1 vs. uniprot
Match: F0YFT5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFT5_AURAN)

HSP 1 Score: 90.9 bits (224), Expect = 6.670e-20
Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 VAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGKDPQYPTIALHRALSGK 180
            +AQQM+GRAGRRGLDTQGNL+Y+ MSWP+I+ LM+G +PAI+GK P +PT+AL  ALS +
Sbjct: 1550 LAQQMAGRAGRRGLDTQGNLVYLGMSWPRIRKLMVGTVPAILGKPPHFPTMALPLALSAE 1609
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BLAST of mRNA_L-digitata_M_contig100900.1.1 vs. uniprot
Match: A0A7S1TTY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTY9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.780e-18
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 VAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGKDPQYPTIALHRAL 171
            +AQQMSGRAGRRGLD +GNL+Y NM WPKI+ LMLG +PAI G+DP YP + L + L
Sbjct:  299 MAQQMSGRAGRRGLDREGNLVYANMPWPKIKSLMLGRVPAIKGEDPLYPLLGLQKLL 355
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BLAST of mRNA_L-digitata_M_contig100900.1.1 vs. uniprot
Match: A0A7S4A060_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A060_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.820e-18
Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 VAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGKDPQYPTIALHRALS 174
            +AQQM+GRAGRRGLDTQGNL+Y+ M+WP+I+ LM+G +P IVGK P + T+AL  ALS
Sbjct:  796 LAQQMAGRAGRRGLDTQGNLVYLGMTWPRIRRLMVGTVPGIVGKTPHFATMALPLALS 853
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BLAST of mRNA_L-digitata_M_contig100900.1.1 vs. uniprot
Match: A0A1Z5JDF0_FISSO (Helicase ATP-binding domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JDF0_FISSO)

HSP 1 Score: 85.1 bits (209), Expect = 7.130e-18
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 VAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGKDPQYPTIALHRALS 174
            +AQQM GRAGRRGLD QGN++Y+ M WP I+ LMLG I  + GK+P+YPT+ L +AL+
Sbjct:  880 IAQQMQGRAGRRGLDVQGNIIYLGMDWPYIENLMLGQISIVTGKEPRYPTMCLQQALA 937
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BLAST of mRNA_L-digitata_M_contig100900.1.1 vs. uniprot
Match: B8BT46_THAPS (Helicase ATP-binding domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BT46_THAPS)

HSP 1 Score: 84.7 bits (208), Expect = 9.740e-18
Identity = 34/58 (58.62%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 VAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGKDPQYPTIALHRALS 174
            +AQQM GRAGRRG+D QGN++Y+ M WP I+ LMLG I  + GK+P+YPT+AL +A++
Sbjct:  885 IAQQMQGRAGRRGMDVQGNVIYLGMEWPYIENLMLGQITKVTGKEPRYPTMALQQAIA 942
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BLAST of mRNA_L-digitata_M_contig100900.1.1 vs. uniprot
Match: B7G3A5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3A5_PHATC)

HSP 1 Score: 84.7 bits (208), Expect = 9.740e-18
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 VAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGKDPQYPTIALHRALS 174
            +AQQM GRAGRRGLD QGN+LY+ M WP I+ LMLG I  + GK+P+YP I L +AL+
Sbjct:  892 IAQQMQGRAGRRGLDVQGNILYLGMDWPYIENLMLGQISQVTGKEPRYPLIVLQQALA 949
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BLAST of mRNA_L-digitata_M_contig100900.1.1 vs. uniprot
Match: K0R6G6_THAOC (Helicase ATP-binding domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R6G6_THAOC)

HSP 1 Score: 83.6 bits (205), Expect = 2.480e-17
Identity = 34/58 (58.62%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 VAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGKDPQYPTIALHRALS 174
            +AQQM GRAGRRG+D QGN++Y+ M WP I+ LMLG I  +VGK+P++PT+AL+ A++
Sbjct:  665 IAQQMQGRAGRRGMDVQGNVIYLGMEWPYIENLMLGQITNVVGKEPRFPTMALNGAIA 722
[Close]
BLAST of mRNA_L-digitata_M_contig100900.1.1 vs. uniprot
Match: A0A7S2KIY8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KIY8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.480e-17
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 VAQQMSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGKDPQYPTIALHRALS 174
            +AQQM GRAGRRG+D QGN++Y+ M WP I+ LMLG I  + GK+P YP +AL RA++
Sbjct:  882 IAQQMQGRAGRRGMDVQGNIVYLGMEWPYIENLMLGQISQVTGKEPHYPIMALQRAIA 939
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100900.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZQ4_ECTSI1.680e-2991.67Helicase ATP-binding domain-containing protein n=2... [more]
A0A836CAV0_9STRA3.130e-2482.76P-loop containing nucleoside triphosphate hydrolas... [more]
F0YFT5_AURAN6.670e-2066.67Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1TTY9_9STRA2.780e-1866.67Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4A060_9STRA3.820e-1865.52Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1Z5JDF0_FISSO7.130e-1860.34Helicase ATP-binding domain-containing protein n=2... [more]
B8BT46_THAPS9.740e-1858.62Helicase ATP-binding domain-containing protein n=1... [more]
B7G3A5_PHATC9.740e-1862.07Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
K0R6G6_THAOC2.480e-1758.62Helicase ATP-binding domain-containing protein n=1... [more]
A0A7S2KIY8_9STRA2.480e-1758.62Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100900contigL-digitata_M_contig100900:717..896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FZQ4
Preferred nameDDX60
PFAMsDEAD,Helicase_C
Model size180
Max annot lvl2759|Eukaryota
KEGG koko:K20103
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002831,GO:0002833,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0023051,GO:0023056,GO:0031347,GO:0031349,GO:0032101,GO:0032103,GO:0039531,GO:0039533,GO:0039535,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043900,GO:0043902,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0045089,GO:0045111,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050688,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051239,GO:0051240,GO:0051704,GO:0051707,GO:0065007,GO:0080134,GO:0097159,GO:1900245,GO:1900246,GO:1901363,GO:1902531,GO:1902533
Exons1
Evalue1.59e-27
EggNOG OGsCOG4581@1|root,KOG0949@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size168
COG categoryL
BRITEko00000,ko01000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406612.2864401-CDS-L-digitata_M_contig100900:716..8841682406612.2864401-CDS-L-digitata_M_contig100900:716..884Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100900 717..884 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406612.2962022-UTR-L-digitata_M_contig100900:884..8961682406612.2962022-UTR-L-digitata_M_contig100900:884..896Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100900 885..896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100900.1.1prot_L-digitata_M_contig100900.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100900 717..884 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100900.1.1

>prot_L-digitata_M_contig100900.1.1 ID=prot_L-digitata_M_contig100900.1.1|Name=mRNA_L-digitata_M_contig100900.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=56bp
MSGRAGRRGLDTQGNLLYMNMSWPKIQGLMLGDIPAIVGKDPQYPTIALH
RALSGK
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mRNA from alignment at L-digitata_M_contig100900:717..896-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100900.1.1 ID=mRNA_L-digitata_M_contig100900.1.1|Name=mRNA_L-digitata_M_contig100900.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=180bp|location=Sequence derived from alignment at L-digitata_M_contig100900:717..896- (Laminaria digitata LdigPH10_18mv male)
GTGGCGCAGCAGATGTCGGGCAGGGCGGGCCGTCGCGGCCTCGACACCCA
GGGAAACCTCCTGTACATGAACATGTCGTGGCCGAAGATCCAGGGCCTGA
TGCTGGGGGACATCCCGGCCATCGTGGGCAAGGACCCCCAGTACCCCACC
ATCGCCCTTCACCGGGCGCTGTCCGGTAAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100900:717..896-

>mRNA_L-digitata_M_contig100900.1.1 ID=mRNA_L-digitata_M_contig100900.1.1|Name=mRNA_L-digitata_M_contig100900.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=168bp|location=Sequence derived from alignment at L-digitata_M_contig100900:717..896- (Laminaria digitata LdigPH10_18mv male)
ATGTCGGGCAGGGCGGGCCGTCGCGGCCTCGACACCCAGGGAAACCTCCT
GTACATGAACATGTCGTGGCCGAAGATCCAGGGCCTGATGCTGGGGGACA
TCCCGGCCATCGTGGGCAAGGACCCCCAGTACCCCACCATCGCCCTTCAC
CGGGCGCTGTCCGGTAAG
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