mRNA_L-digitata_M_contig100889.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male
|
Overview
Homology
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: A0A7L8S6Y1_9HYPH (Ankyrin repeat domain-containing protein n=2 Tax=Aminobacter TaxID=31988 RepID=A0A7L8S6Y1_9HYPH) HSP 1 Score: 60.1 bits (144), Expect = 3.370e-8 Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 1
Query: 13 SLDGGSECKLILGILDGKFDAVKAVLQAGADVNGSSEQLVPPIVAAITADDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYADIVRLLLEQSRADPNA 357
++DGG+ L L + G A K +L+ GADVN + L P ++ A+ +D+++LLL+ GADP+ E ALHVA RSG D V+ L+E AD NA
Sbjct: 48 NIDGGAT-PLYLAVRGGHMAAAKLLLERGADVNAAPTPLGPALMPALAKRRIDLINLLLDNGADPNAYRN---------------REAALHVAVRSGCLDCVKALVEAG-ADVNA 145
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: A0A1G9AQK6_9HYPH (Cytochrome c n=6 Tax=Mesorhizobium TaxID=68287 RepID=A0A1G9AQK6_9HYPH) HSP 1 Score: 57.8 bits (138), Expect = 2.260e-7 Identity = 40/112 (35.71%), Postives = 59/112 (52.68%), Query Frame = 1
Query: 25 GSECKLILGILDGKFDAVKAVLQAGADVNGS-SEQLVPPIVAAITADDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYADIVRLLLEQSRADPNA 357
G L L + G F A K +++ GADVN + + L P ++ A+ +D+++LLLE+GA+P+ E ALH+AARSG D V+ L+E AD NA
Sbjct: 49 GQATPLYLAVRGGHFAAAKLLIERGADVNAAPTPGLGPALMPALAKRRIDLINLLLERGANPNSQRN---------------RENALHIAARSGCLDCVKALVEAG-ADVNA 144
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: A0A0D2CM81_9EURO (ZZ-type domain-containing protein n=1 Tax=Cladophialophora immunda TaxID=569365 RepID=A0A0D2CM81_9EURO) HSP 1 Score: 57.0 bits (136), Expect = 5.810e-7 Identity = 38/122 (31.15%), Postives = 63/122 (51.64%), Query Frame = 1
Query: 4 HGMSLDGGSE--CKLILGILDGKFDAVKAVLQAGADVNGSSEQLVPPIVAAITADDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYADIVRLLLEQSRADPNATD 363
HG + D E L+ + G+ D + +L+ AD N + +P IV A +++++++LLL+ GADP+K + A + ALH+A G V+LLL++ A+PNA D
Sbjct: 1005 HGSNPDTEDEYGTALLQSVQFGRLDIARLLLERNADANKVRPKTIPAIVEAAAGENLEMIELLLKHGADPEKREMAD--------APSGFQRTALHLAVHYGLMKTVKLLLDRG-ANPNAVD 1117
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: A0A526NYI9_9HYPH (C-type cytochrome n=3 Tax=Mesorhizobium TaxID=68287 RepID=A0A526NYI9_9HYPH) HSP 1 Score: 56.6 bits (135), Expect = 5.870e-7 Identity = 39/112 (34.82%), Postives = 59/112 (52.68%), Query Frame = 1
Query: 25 GSECKLILGILDGKFDAVKAVLQAGADVNGS-SEQLVPPIVAAITADDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYADIVRLLLEQSRADPNA 357
GS L L + G F K +++ GADVN + + +L PP++ A+ +D+++LLL+ GA+P+ E ALH+A RSG D V+ L+E AD NA
Sbjct: 51 GSATPLYLAVRGGHFAVAKLLVERGADVNAAPTPRLGPPLMPALAKSRIDLINLLLDGGANPNAQRG---------------REAALHIAVRSGCLDCVKALVEGG-ADVNA 146
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: A0A3N4K2M9_9PEZI (Ankyrin (Fragment) n=1 Tax=Choiromyces venosus 120613-1 TaxID=1336337 RepID=A0A3N4K2M9_9PEZI) HSP 1 Score: 54.3 bits (129), Expect = 6.850e-7 Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 1
Query: 52 ILDGKFDAVKAVLQAGADVNGSSEQLVPPIVAAITADDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYADIVRLLLE 333
+++G FDAVK ++++GADVN S + P++AAI A DIV LLL+ GA D S PD L AA+SG I +LLE
Sbjct: 5 VVEGDFDAVKRLIESGADVNASPSKRDTPLLAAIAAKKPDIVKLLLDNGARFDLS-------PDP------FDGGPLQRAAKSGNVQITSMLLE 85
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: A0A807AVZ5_9HYPH (Cytochrome c domain-containing protein n=26 Tax=Mesorhizobium TaxID=68287 RepID=A0A807AVZ5_9HYPH) HSP 1 Score: 55.8 bits (133), Expect = 1.110e-6 Identity = 40/118 (33.90%), Postives = 59/118 (50.00%), Query Frame = 1
Query: 7 GMSLDGGSECKLILGILDGKFDAVKAVLQAGADVNGSSEQLV-PPIVAAITADDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYADIVRLLLEQSRADPNA 357
G+ G L L + G A K +++ GAD N + L+ PP++ A+ VD+++LLL+ GA+P+ GE ALH+A RSG D V+ L+E AD NA
Sbjct: 45 GVDESDGKATPLYLAVRGGHLAAAKLLMERGADANVAPTPLLGPPLMPALAKRRVDLINLLLQGGANPNAQRG---------------GESALHIAVRSGCLDCVKALVEAG-ADVNA 146
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: A0A442XKI3_9HYPH (C-type cytochrome n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A442XKI3_9HYPH) HSP 1 Score: 55.5 bits (132), Expect = 1.510e-6 Identity = 38/112 (33.93%), Postives = 58/112 (51.79%), Query Frame = 1
Query: 25 GSECKLILGILDGKFDAVKAVLQAGADVNGSSE-QLVPPIVAAITADDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYADIVRLLLEQSRADPNA 357
G L L + G F A K +++ GADVN + + +L P ++ A+ +D++DLLL+ GA+P+ E + LH+A RSG D V+ L+E AD NA
Sbjct: 50 GQATPLYLAVRGGHFAAAKLLMERGADVNAAPDPRLGPALMPALAKRRIDLIDLLLDGGANPNARRNREAV---------------LHIAVRSGCLDCVKALVEAG-ADVNA 145
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: UPI000719CEE3 (putative ankyrin repeat protein RF_0381 n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719CEE3) HSP 1 Score: 55.1 bits (131), Expect = 2.460e-6 Identity = 42/127 (33.07%), Postives = 63/127 (49.61%), Query Frame = 1
Query: 40 LILGILDGKFDAVKAVLQAGADVNGSSEQLVPPIVAAITADDVDIVDLLLEQGADP-------------------DKSVTIELICPDTGVATAILGERALHVAARSGYADIVRLLLEQSRADPNATD 363
L+ + +GK AV+ +L GADVN + + + +DI+ LLLE GA+P +++V L+ A + G+ +LH+AARSG DI+RLLLE + A PN D
Sbjct: 154 LMRAVREGKEAAVQMLLSHGADVNAADSYGETSLYHVPCSGRLDIMRLLLEAGANPNVAKTESGETPLIKAVREGEEAVARMLLAGADANAADLYGQTSLHMAARSGQLDIMRLLLEAA-AKPNVAD 279
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: A0A526YLC7_9HYPH (Ankyrin repeat domain-containing protein (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A526YLC7_9HYPH) HSP 1 Score: 52.4 bits (124), Expect = 2.500e-6 Identity = 34/100 (34.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query: 25 GSECKLILGILDGKFDAVKAVLQAGADVNGS-SEQLVPPIVAAITADDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYADIVR 321
G L L + G F A K +++ GADVN + + L P ++ A+ +D+++LLLE+GA+P+ E ALH+AARSG D V+
Sbjct: 22 GQATPLYLAVRGGHFAAAKLLIERGADVNAAPTPGLGPALMPALAKRRIDLINLLLERGANPNSQRN---------------RENALHIAARSGCLDCVK 106
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: A0A3Q9ADS3_9HYPH (C-type cytochrome n=9 Tax=unclassified Mesorhizobium TaxID=325217 RepID=A0A3Q9ADS3_9HYPH) HSP 1 Score: 54.7 bits (130), Expect = 2.840e-6 Identity = 42/118 (35.59%), Postives = 61/118 (51.69%), Query Frame = 1
Query: 7 GMSLDGGSECKLILGILDGKFDAVKAVLQAGADVNGS-SEQLVPPIVAAITADDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYADIVRLLLEQSRADPNA 357
G+ GS L L + G F A K +++ GADVN + + L P ++ A+ VD+++LLL+ GA+P+ D G G+ ALHVA G D V+ L+E AD NA
Sbjct: 45 GVDESDGSATPLYLAVRAGHFAAAKLLIERGADVNAAPTPGLGPALMPALAKRRVDLINLLLDGGANPNS---------DRG------GQAALHVAVTLGCLDCVKALVEAG-ADVNA 146 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100889.3.1 >prot_L-digitata_M_contig100889.3.1 ID=prot_L-digitata_M_contig100889.3.1|Name=mRNA_L-digitata_M_contig100889.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=118bp MSLDGGSECKLILGILDGKFDAVKAVLQAGADVNGSSEQLVPPIVAAITAback to top mRNA from alignment at L-digitata_M_contig100889:5..367- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100889.3.1 ID=mRNA_L-digitata_M_contig100889.3.1|Name=mRNA_L-digitata_M_contig100889.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=363bp|location=Sequence derived from alignment at L-digitata_M_contig100889:5..367- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100889:5..367- >mRNA_L-digitata_M_contig100889.3.1 ID=mRNA_L-digitata_M_contig100889.3.1|Name=mRNA_L-digitata_M_contig100889.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=354bp|location=Sequence derived from alignment at L-digitata_M_contig100889:5..367- (Laminaria digitata LdigPH10_18mv male)back to top |