mRNA_L-digitata_M_contig100889.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100889.3.1
Unique NamemRNA_L-digitata_M_contig100889.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: A0A7L8S6Y1_9HYPH (Ankyrin repeat domain-containing protein n=2 Tax=Aminobacter TaxID=31988 RepID=A0A7L8S6Y1_9HYPH)

HSP 1 Score: 60.1 bits (144), Expect = 3.370e-8
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 1
Query:   13 SLDGGSECKLILGILDGKFDAVKAVLQAGADVNGSSEQLVPPIVAAITADDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYADIVRLLLEQSRADPNA 357
            ++DGG+   L L +  G   A K +L+ GADVN +   L P ++ A+    +D+++LLL+ GADP+                    E ALHVA RSG  D V+ L+E   AD NA
Sbjct:   48 NIDGGAT-PLYLAVRGGHMAAAKLLLERGADVNAAPTPLGPALMPALAKRRIDLINLLLDNGADPNAYRN---------------REAALHVAVRSGCLDCVKALVEAG-ADVNA 145          
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: A0A1G9AQK6_9HYPH (Cytochrome c n=6 Tax=Mesorhizobium TaxID=68287 RepID=A0A1G9AQK6_9HYPH)

HSP 1 Score: 57.8 bits (138), Expect = 2.260e-7
Identity = 40/112 (35.71%), Postives = 59/112 (52.68%), Query Frame = 1
Query:   25 GSECKLILGILDGKFDAVKAVLQAGADVNGS-SEQLVPPIVAAITADDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYADIVRLLLEQSRADPNA 357
            G    L L +  G F A K +++ GADVN + +  L P ++ A+    +D+++LLLE+GA+P+                    E ALH+AARSG  D V+ L+E   AD NA
Sbjct:   49 GQATPLYLAVRGGHFAAAKLLIERGADVNAAPTPGLGPALMPALAKRRIDLINLLLERGANPNSQRN---------------RENALHIAARSGCLDCVKALVEAG-ADVNA 144          
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: A0A0D2CM81_9EURO (ZZ-type domain-containing protein n=1 Tax=Cladophialophora immunda TaxID=569365 RepID=A0A0D2CM81_9EURO)

HSP 1 Score: 57.0 bits (136), Expect = 5.810e-7
Identity = 38/122 (31.15%), Postives = 63/122 (51.64%), Query Frame = 1
Query:    4 HGMSLDGGSE--CKLILGILDGKFDAVKAVLQAGADVNGSSEQLVPPIVAAITADDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYADIVRLLLEQSRADPNATD 363
            HG + D   E    L+  +  G+ D  + +L+  AD N    + +P IV A   +++++++LLL+ GADP+K    +        A +     ALH+A   G    V+LLL++  A+PNA D
Sbjct: 1005 HGSNPDTEDEYGTALLQSVQFGRLDIARLLLERNADANKVRPKTIPAIVEAAAGENLEMIELLLKHGADPEKREMAD--------APSGFQRTALHLAVHYGLMKTVKLLLDRG-ANPNAVD 1117          
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: A0A526NYI9_9HYPH (C-type cytochrome n=3 Tax=Mesorhizobium TaxID=68287 RepID=A0A526NYI9_9HYPH)

HSP 1 Score: 56.6 bits (135), Expect = 5.870e-7
Identity = 39/112 (34.82%), Postives = 59/112 (52.68%), Query Frame = 1
Query:   25 GSECKLILGILDGKFDAVKAVLQAGADVNGS-SEQLVPPIVAAITADDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYADIVRLLLEQSRADPNA 357
            GS   L L +  G F   K +++ GADVN + + +L PP++ A+    +D+++LLL+ GA+P+                    E ALH+A RSG  D V+ L+E   AD NA
Sbjct:   51 GSATPLYLAVRGGHFAVAKLLVERGADVNAAPTPRLGPPLMPALAKSRIDLINLLLDGGANPNAQRG---------------REAALHIAVRSGCLDCVKALVEGG-ADVNA 146          
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: A0A3N4K2M9_9PEZI (Ankyrin (Fragment) n=1 Tax=Choiromyces venosus 120613-1 TaxID=1336337 RepID=A0A3N4K2M9_9PEZI)

HSP 1 Score: 54.3 bits (129), Expect = 6.850e-7
Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 1
Query:   52 ILDGKFDAVKAVLQAGADVNGSSEQLVPPIVAAITADDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYADIVRLLLE 333
            +++G FDAVK ++++GADVN S  +   P++AAI A   DIV LLL+ GA  D S       PD            L  AA+SG   I  +LLE
Sbjct:    5 VVEGDFDAVKRLIESGADVNASPSKRDTPLLAAIAAKKPDIVKLLLDNGARFDLS-------PDP------FDGGPLQRAAKSGNVQITSMLLE 85          
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: A0A807AVZ5_9HYPH (Cytochrome c domain-containing protein n=26 Tax=Mesorhizobium TaxID=68287 RepID=A0A807AVZ5_9HYPH)

HSP 1 Score: 55.8 bits (133), Expect = 1.110e-6
Identity = 40/118 (33.90%), Postives = 59/118 (50.00%), Query Frame = 1
Query:    7 GMSLDGGSECKLILGILDGKFDAVKAVLQAGADVNGSSEQLV-PPIVAAITADDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYADIVRLLLEQSRADPNA 357
            G+    G    L L +  G   A K +++ GAD N +   L+ PP++ A+    VD+++LLL+ GA+P+                   GE ALH+A RSG  D V+ L+E   AD NA
Sbjct:   45 GVDESDGKATPLYLAVRGGHLAAAKLLMERGADANVAPTPLLGPPLMPALAKRRVDLINLLLQGGANPNAQRG---------------GESALHIAVRSGCLDCVKALVEAG-ADVNA 146          
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: A0A442XKI3_9HYPH (C-type cytochrome n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A442XKI3_9HYPH)

HSP 1 Score: 55.5 bits (132), Expect = 1.510e-6
Identity = 38/112 (33.93%), Postives = 58/112 (51.79%), Query Frame = 1
Query:   25 GSECKLILGILDGKFDAVKAVLQAGADVNGSSE-QLVPPIVAAITADDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYADIVRLLLEQSRADPNA 357
            G    L L +  G F A K +++ GADVN + + +L P ++ A+    +D++DLLL+ GA+P+     E +               LH+A RSG  D V+ L+E   AD NA
Sbjct:   50 GQATPLYLAVRGGHFAAAKLLMERGADVNAAPDPRLGPALMPALAKRRIDLIDLLLDGGANPNARRNREAV---------------LHIAVRSGCLDCVKALVEAG-ADVNA 145          
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: UPI000719CEE3 (putative ankyrin repeat protein RF_0381 n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719CEE3)

HSP 1 Score: 55.1 bits (131), Expect = 2.460e-6
Identity = 42/127 (33.07%), Postives = 63/127 (49.61%), Query Frame = 1
Query:   40 LILGILDGKFDAVKAVLQAGADVNGSSEQLVPPIVAAITADDVDIVDLLLEQGADP-------------------DKSVTIELICPDTGVATAILGERALHVAARSGYADIVRLLLEQSRADPNATD 363
            L+  + +GK  AV+ +L  GADVN +       +     +  +DI+ LLLE GA+P                   +++V   L+      A  + G+ +LH+AARSG  DI+RLLLE + A PN  D
Sbjct:  154 LMRAVREGKEAAVQMLLSHGADVNAADSYGETSLYHVPCSGRLDIMRLLLEAGANPNVAKTESGETPLIKAVREGEEAVARMLLAGADANAADLYGQTSLHMAARSGQLDIMRLLLEAA-AKPNVAD 279          
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: A0A526YLC7_9HYPH (Ankyrin repeat domain-containing protein (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A526YLC7_9HYPH)

HSP 1 Score: 52.4 bits (124), Expect = 2.500e-6
Identity = 34/100 (34.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:   25 GSECKLILGILDGKFDAVKAVLQAGADVNGS-SEQLVPPIVAAITADDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYADIVR 321
            G    L L +  G F A K +++ GADVN + +  L P ++ A+    +D+++LLLE+GA+P+                    E ALH+AARSG  D V+
Sbjct:   22 GQATPLYLAVRGGHFAAAKLLIERGADVNAAPTPGLGPALMPALAKRRIDLINLLLERGANPNSQRN---------------RENALHIAARSGCLDCVK 106          
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Match: A0A3Q9ADS3_9HYPH (C-type cytochrome n=9 Tax=unclassified Mesorhizobium TaxID=325217 RepID=A0A3Q9ADS3_9HYPH)

HSP 1 Score: 54.7 bits (130), Expect = 2.840e-6
Identity = 42/118 (35.59%), Postives = 61/118 (51.69%), Query Frame = 1
Query:    7 GMSLDGGSECKLILGILDGKFDAVKAVLQAGADVNGS-SEQLVPPIVAAITADDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYADIVRLLLEQSRADPNA 357
            G+    GS   L L +  G F A K +++ GADVN + +  L P ++ A+    VD+++LLL+ GA+P+          D G      G+ ALHVA   G  D V+ L+E   AD NA
Sbjct:   45 GVDESDGSATPLYLAVRAGHFAAAKLLIERGADVNAAPTPGLGPALMPALAKRRVDLINLLLDGGANPNS---------DRG------GQAALHVAVTLGCLDCVKALVEAG-ADVNA 146          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100889.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A7L8S6Y1_9HYPH3.370e-836.52Ankyrin repeat domain-containing protein n=2 Tax=A... [more]
A0A1G9AQK6_9HYPH2.260e-735.71Cytochrome c n=6 Tax=Mesorhizobium TaxID=68287 Rep... [more]
A0A0D2CM81_9EURO5.810e-731.15ZZ-type domain-containing protein n=1 Tax=Cladophi... [more]
A0A526NYI9_9HYPH5.870e-734.82C-type cytochrome n=3 Tax=Mesorhizobium TaxID=6828... [more]
A0A3N4K2M9_9PEZI6.850e-740.43Ankyrin (Fragment) n=1 Tax=Choiromyces venosus 120... [more]
A0A807AVZ5_9HYPH1.110e-633.90Cytochrome c domain-containing protein n=26 Tax=Me... [more]
A0A442XKI3_9HYPH1.510e-633.93C-type cytochrome n=1 Tax=Mesorhizobium sp. TaxID=... [more]
UPI000719CEE32.460e-633.07putative ankyrin repeat protein RF_0381 n=1 Tax=Pr... [more]
A0A526YLC7_9HYPH2.500e-634.00Ankyrin repeat domain-containing protein (Fragment... [more]
A0A3Q9ADS3_9HYPH2.840e-635.59C-type cytochrome n=9 Tax=unclassified Mesorhizobi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100889contigL-digitata_M_contig100889:5..367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog112098.XP_008619772.1
PFAMsAnk_2,Ank_4,Pkinase,Pkinase_Tyr
Model size363
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.57e-06
EggNOG OGsCOG0515@1|root,COG0666@1|root,KOG0192@2759|Eukaryota,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size354
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.8591843-CDS-L-digitata_M_contig100889:4..3581682406611.8591843-CDS-L-digitata_M_contig100889:4..358Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100889 5..358 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.870086-UTR-L-digitata_M_contig100889:358..3671682406611.870086-UTR-L-digitata_M_contig100889:358..367Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100889 359..367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100889.3.1prot_L-digitata_M_contig100889.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100889 5..358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100889.3.1

>prot_L-digitata_M_contig100889.3.1 ID=prot_L-digitata_M_contig100889.3.1|Name=mRNA_L-digitata_M_contig100889.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=118bp
MSLDGGSECKLILGILDGKFDAVKAVLQAGADVNGSSEQLVPPIVAAITA
DDVDIVDLLLEQGADPDKSVTIELICPDTGVATAILGERALHVAARSGYA
DIVRLLLEQSRADPNATD
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mRNA from alignment at L-digitata_M_contig100889:5..367-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100889.3.1 ID=mRNA_L-digitata_M_contig100889.3.1|Name=mRNA_L-digitata_M_contig100889.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=363bp|location=Sequence derived from alignment at L-digitata_M_contig100889:5..367- (Laminaria digitata LdigPH10_18mv male)
GTACATGGTATGTCTCTTGACGGTGGGAGTGAATGCAAGTTGATACTGGG CATACTGGACGGAAAGTTTGATGCAGTCAAGGCCGTGCTTCAGGCTGGAG CGGACGTGAACGGGAGTTCAGAGCAACTCGTCCCGCCCATCGTAGCTGCC ATCACGGCGGATGATGTCGACATCGTCGATCTTTTGCTGGAGCAAGGCGC AGACCCCGACAAGTCAGTCACCATAGAGCTGATATGCCCGGATACGGGCG TCGCTACCGCCATTCTTGGTGAACGGGCCCTGCATGTAGCGGCCAGGAGC GGGTACGCCGACATCGTTCGCTTGCTGCTGGAGCAGTCCCGCGCCGATCC CAACGCCACCGAC
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Coding sequence (CDS) from alignment at L-digitata_M_contig100889:5..367-

>mRNA_L-digitata_M_contig100889.3.1 ID=mRNA_L-digitata_M_contig100889.3.1|Name=mRNA_L-digitata_M_contig100889.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=354bp|location=Sequence derived from alignment at L-digitata_M_contig100889:5..367- (Laminaria digitata LdigPH10_18mv male)
ATGTCTCTTGACGGTGGGAGTGAATGCAAGTTGATACTGGGCATACTGGA
CGGAAAGTTTGATGCAGTCAAGGCCGTGCTTCAGGCTGGAGCGGACGTGA
ACGGGAGTTCAGAGCAACTCGTCCCGCCCATCGTAGCTGCCATCACGGCG
GATGATGTCGACATCGTCGATCTTTTGCTGGAGCAAGGCGCAGACCCCGA
CAAGTCAGTCACCATAGAGCTGATATGCCCGGATACGGGCGTCGCTACCG
CCATTCTTGGTGAACGGGCCCTGCATGTAGCGGCCAGGAGCGGGTACGCC
GACATCGTTCGCTTGCTGCTGGAGCAGTCCCGCGCCGATCCCAACGCCAC
CGAC
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