mRNA_L-digitata_M_contig100888.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100888.1.1
Unique NamemRNA_L-digitata_M_contig100888.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100888.1.1 vs. uniprot
Match: D7FTH5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH5_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.060e-14
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1
Query:    1 ISEAYPEVPWVFVFRDPVEVMVSNLKSLAGAPCVR 105
            ISEAYPEVPWVFVFRDPVEVMVSNLKS AGAPCVR
Sbjct:  282 ISEAYPEVPWVFVFRDPVEVMVSNLKSYAGAPCVR 316          
BLAST of mRNA_L-digitata_M_contig100888.1.1 vs. uniprot
Match: B9XBL0_PEDPL (Aspartyl/asparaginyl beta-hydroxylase n=1 Tax=Pedosphaera parvula (strain Ellin514) TaxID=320771 RepID=B9XBL0_PEDPL)

HSP 1 Score: 53.1 bits (126), Expect = 4.150e-7
Identity = 21/30 (70.00%), Postives = 28/30 (93.33%), Query Frame = 1
Query:    1 ISEAYPEVPWVFVFRDPVEVMVSNLKSLAG 90
            I +A+P+VPW+FV+R+PVEV+VSNLK LAG
Sbjct:  164 IHKAFPDVPWIFVYREPVEVIVSNLKQLAG 193          
BLAST of mRNA_L-digitata_M_contig100888.1.1 vs. uniprot
Match: A0A4D9CT70_9STRA (JmjC domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CT70_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.470e-6
Identity = 18/35 (51.43%), Postives = 27/35 (77.14%), Query Frame = 1
Query:    1 ISEAYPEVPWVFVFRDPVEVMVSNLKSLAGAPCVR 105
            I +A+PE PW +++RDPVE++VSN +   G PC+R
Sbjct:  299 ILKAFPETPWAYIYRDPVEIIVSNFQRGRGGPCIR 333          
BLAST of mRNA_L-digitata_M_contig100888.1.1 vs. uniprot
Match: D7G7C8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C8_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.480e-6
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1
Query:    1 ISEAYPEVPWVFVFRDPVEVMVSNLKSLAGAP 96
            + +AYPEV WV++FRDPVEVMVSNLK  A  P
Sbjct:  193 MMKAYPEVGWVYLFRDPVEVMVSNLKCFANRP 224          
BLAST of mRNA_L-digitata_M_contig100888.1.1 vs. uniprot
Match: A0A835ZD42_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD42_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.000e-6
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1
Query:    1 ISEAYPEVPWVFVFRDPVEVMVSNL-KSLAGAPCVR 105
            ++  +P+VPWV++FRDPVEVMVSN+ +    APCVR
Sbjct:  825 VTSMFPDVPWVYLFRDPVEVMVSNIGRGELAAPCVR 860          
BLAST of mRNA_L-digitata_M_contig100888.1.1 vs. uniprot
Match: F2UI36_SALR5 (JmjC domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UI36_SALR5)

HSP 1 Score: 50.1 bits (118), Expect = 5.140e-6
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    4 SEAYPEVPWVFVFRDPVEVMVSNLKSL--AGA--PCVR 105
            +EA+PEVPW+FV+RDPVEVM S+ K    AGA  PC+R
Sbjct:  219 TEAFPEVPWMFVYRDPVEVMASHFKQKVPAGAKVPCLR 256          
BLAST of mRNA_L-digitata_M_contig100888.1.1 vs. uniprot
Match: A0A6H5K3E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E4_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 9.700e-6
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 1
Query:    1 ISEAYPEVPWVFVFRDPVEVMVSNLKSLAG 90
            + +AYPEV WV++FRDPVEVMVSNLK   G
Sbjct:  317 MMKAYPEVGWVYLFRDPVEVMVSNLKGAYG 346          
BLAST of mRNA_L-digitata_M_contig100888.1.1 vs. uniprot
Match: A0A7S4T9D0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T9D0_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 1.330e-5
Identity = 20/36 (55.56%), Postives = 28/36 (77.78%), Query Frame = 1
Query:    4 SEAYPEVPWVFVFRDPVEVMVSNLKSLAG--APCVR 105
             EAYP+ PW+FVFR+PV++M+S+LK   G  A C+R
Sbjct:  211 KEAYPDTPWIFVFREPVQIMMSHLKDNVGDRAVCLR 246          
BLAST of mRNA_L-digitata_M_contig100888.1.1 vs. uniprot
Match: A0A7S2H7V9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H7V9_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 1.810e-5
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1
Query:   10 AYPEVPWVFVFRDPVEVMVSNLK---SLAGAPCVR 105
            A+P+VPW FVFR+PV+VM+S+LK   S AGA C+R
Sbjct:  240 AFPDVPWTFVFREPVQVMMSHLKGSGSHAGAVCMR 274          
BLAST of mRNA_L-digitata_M_contig100888.1.1 vs. uniprot
Match: A0A7S2SP01_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP01_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 2.480e-5
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 1
Query:    4 SEAYPEVPWVFVFRDPVEVMVSNLKS-LAGAPCVR 105
             +A+PEVPW FVFR+PV+VM+S+ K   +GA C+R
Sbjct:  269 QQAFPEVPWAFVFREPVQVMMSHFKGGTSGAVCLR 303          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100888.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FTH5_ECTSI1.060e-1497.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
B9XBL0_PEDPL4.150e-770.00Aspartyl/asparaginyl beta-hydroxylase n=1 Tax=Pedo... [more]
A0A4D9CT70_9STRA1.470e-651.43JmjC domain-containing protein n=3 Tax=Monodopsida... [more]
D7G7C8_ECTSI1.480e-668.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZD42_9STRA2.000e-658.33N-acetyltransferase domain-containing protein n=1 ... [more]
F2UI36_SALR55.140e-663.16JmjC domain-containing protein n=1 Tax=Salpingoeca... [more]
A0A6H5K3E4_9PHAE9.700e-670.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4T9D0_9STRA1.330e-555.56Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2H7V9_9STRA1.810e-562.86Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SP01_9STRA2.480e-557.14Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100888contigL-digitata_M_contig100888:686..790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog946362.XP_004991157.1
PFAMsCupin_8
Model size105
Max annot lvl2759|Eukaryota
KEGG koko:K10277
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.42e-07
EggNOG OGsKOG2132@1|root,KOG2132@2759|Eukaryota
EC1.14.11.27
DescriptiontRNAPhe (7-(3-amino-3-carboxypropyl)wyosine37-C2)-hydroxylase activity
Cds size105
COG categoryIQ
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.8297205-CDS-L-digitata_M_contig100888:685..7901682406611.8297205-CDS-L-digitata_M_contig100888:685..790Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100888 686..790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100888.1.1prot_L-digitata_M_contig100888.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100888 686..790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100888.1.1

>prot_L-digitata_M_contig100888.1.1 ID=prot_L-digitata_M_contig100888.1.1|Name=mRNA_L-digitata_M_contig100888.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=35bp
ISEAYPEVPWVFVFRDPVEVMVSNLKSLAGAPCVR
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mRNA from alignment at L-digitata_M_contig100888:686..790-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100888.1.1 ID=mRNA_L-digitata_M_contig100888.1.1|Name=mRNA_L-digitata_M_contig100888.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=105bp|location=Sequence derived from alignment at L-digitata_M_contig100888:686..790- (Laminaria digitata LdigPH10_18mv male)
ATATCCGAGGCTTACCCGGAAGTGCCCTGGGTGTTCGTTTTCCGAGACCC GGTGGAGGTGATGGTGTCCAACCTTAAGTCCCTCGCAGGGGCACCCTGCG TGCGC
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Coding sequence (CDS) from alignment at L-digitata_M_contig100888:686..790-

>mRNA_L-digitata_M_contig100888.1.1 ID=mRNA_L-digitata_M_contig100888.1.1|Name=mRNA_L-digitata_M_contig100888.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=105bp|location=Sequence derived from alignment at L-digitata_M_contig100888:686..790- (Laminaria digitata LdigPH10_18mv male)
ATATCCGAGGCTTACCCGGAAGTGCCCTGGGTGTTCGTTTTCCGAGACCC
GGTGGAGGTGATGGTGTCCAACCTTAAGTCCCTCGCAGGGGCACCCTGCG
TGCGC
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