mRNA_L-digitata_M_contig100862.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: A0A2D7FJ07_9PROT (Histidine kinase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FJ07_9PROT) HSP 1 Score: 263 bits (672), Expect = 3.360e-85 Identity = 123/149 (82.55%), Postives = 144/149 (96.64%), Query Frame = 1
Query: 1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPMHSES 447
RRVAQAGFGRH+EFVE+YDPSLP VYGNADQLIQVFLNIVKNACEA+P T GKITI +G+QHGIRLALPGG+SRVQLPLIV+++DNGPGIP+D++A+LFDPFVTSKSDG+GLGL+LVAKV+GDHGGIVEFD+SD GTEFR+RLPMH+++
Sbjct: 219 RRVAQAGFGRHIEFVEHYDPSLPSVYGNADQLIQVFLNIVKNACEALPQTDGKITILTGFQHGIRLALPGGSSRVQLPLIVTVQDNGPGIPEDIAANLFDPFVTSKSDGTGLGLSLVAKVVGDHGGIVEFDTSDQGTEFRVRLPMHADT 367
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: A0A520NRV4_9PROT (Histidine kinase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NRV4_9PROT) HSP 1 Score: 233 bits (593), Expect = 1.450e-73 Identity = 111/148 (75.00%), Postives = 128/148 (86.49%), Query Frame = 1
Query: 1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPMHSE 444
RRVA+AGFG HV F+E YDPSLPPV+GNADQLIQV LNIVKNACEAVP G+I + + YQHG+RLALPGG +RVQLPL+V+I DNGPGI D++A+LFDPFVTSK DGSGLG+AL AKV+GDHGGI+EFDSS GTEFRLRLPM +
Sbjct: 201 RRVAEAGFGSHVAFLEEYDPSLPPVHGNADQLIQVLLNIVKNACEAVPAINGRIVLRTAYQHGVRLALPGGATRVQLPLLVTITDNGPGILPDLAANLFDPFVTSKPDGSGLGMALAAKVVGDHGGIIEFDSSSEGTEFRLRLPMFQD 348
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: A0A2S6QC64_9PROT (Histidine kinase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QC64_9PROT) HSP 1 Score: 226 bits (576), Expect = 8.880e-71 Identity = 106/150 (70.67%), Postives = 127/150 (84.67%), Query Frame = 1
Query: 1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPMHSESG 450
R+VA+AGFGRHV FVE YDPSLPPV+GNADQLIQ LN+VKNACEAV GKI + + YQH +RLALPGG +++QLPL+V++ DNG GI DV+ +LFDPFVTSKSDGSGLG+AL AKV+GDHGGI+EFD++D GTEFRLRLPM + G
Sbjct: 219 RQVAEAGFGRHVYFVEEYDPSLPPVHGNADQLIQALLNVVKNACEAVTENEGKIILRTAYQHSVRLALPGGGTQIQLPLLVAVIDNGRGISPDVAENLFDPFVTSKSDGSGLGMALAAKVVGDHGGIIEFDTADTGTEFRLRLPMCQDGG 368
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: A0A8J3E318_9PROT (Histidine kinase n=1 Tax=Aliidongia dinghuensis TaxID=1867774 RepID=A0A8J3E318_9PROT) HSP 1 Score: 224 bits (570), Expect = 8.190e-70 Identity = 102/150 (68.00%), Postives = 127/150 (84.67%), Query Frame = 1
Query: 1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPMHSESG 450
R+VAQAGFG+HV F+E YDPSLPPV GN D+L+QVFLN++KNA EAVP GG+IT+T+ YQHGIRLA+PG +SRV LPL+VS++DNG GIP+D+ AHLFDPFVT+K +G+GLGLALVAK++GDHGG++EFDS T FR LPM + G
Sbjct: 228 RKVAQAGFGKHVRFIEEYDPSLPPVRGNRDRLVQVFLNLIKNAAEAVPEEGGEITLTTAYQHGIRLAVPGSDSRVHLPLVVSVQDNGAGIPEDLQAHLFDPFVTTKRNGTGLGLALVAKIIGDHGGVIEFDSQPRRTVFRALLPMVTRDG 377
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: UPI00198B7DE8 (PAS domain-containing protein n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=UPI00198B7DE8) HSP 1 Score: 219 bits (559), Expect = 2.980e-68 Identity = 103/148 (69.59%), Postives = 124/148 (83.78%), Query Frame = 1
Query: 1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPMHSE 444
RR+A+ GFGRHV VENYDPSLPPV+GN DQLIQVFLN+VKNA E+VPH GG++ I + YQHGIRLA+PG ++R LPL+VSI+DNGPGIP+D+ HLFD FVT+K G+GLGLALVAK++GDHGGIVEFDS+ T FR+ LPM E
Sbjct: 221 RRLAENGFGRHVRIVENYDPSLPPVFGNRDQLIQVFLNLVKNAAESVPHEGGEVVIATAYQHGIRLAMPGTDTRRHLPLVVSIQDNGPGIPEDLRPHLFDAFVTTKPSGTGLGLALVAKIVGDHGGIVEFDSTPRRTVFRVMLPMVQE 368
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: A0A1J5R027_9ZZZZ (Nitrogen regulation protein NR(II) n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5R027_9ZZZZ) HSP 1 Score: 218 bits (555), Expect = 1.260e-67 Identity = 104/151 (68.87%), Postives = 127/151 (84.11%), Query Frame = 1
Query: 1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPM--HSES 447
RRVAQAGFGR+V F E YDPSLPPV GN DQL+QVFLN+VKNACEAV + GG+I +++ +QHGIRLA+PGG +R+ LPL+VS++DNGPGIP+D+ HLFDPFVT+K GSGLGLALVAK++GDHGG+VEFDS T FR+ LPM H +S
Sbjct: 221 RRVAQAGFGRNVRFHELYDPSLPPVPGNRDQLVQVFLNLVKNACEAVGNEGGEIVLSTAFQHGIRLAVPGGEARMHLPLVVSVQDNGPGIPEDLRPHLFDPFVTTKVSGSGLGLALVAKIIGDHGGVVEFDSQPRRTVFRVMLPMVQHEDS 371
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: UPI000DF3D61C (ATP-binding protein n=1 Tax=Oleisolibacter albus TaxID=2171757 RepID=UPI000DF3D61C) HSP 1 Score: 218 bits (555), Expect = 1.410e-67 Identity = 98/148 (66.22%), Postives = 126/148 (85.14%), Query Frame = 1
Query: 1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPMHSE 444
RRVAQ+GF RH+ FVE YDPSLPPVYGN DQLIQVFLN+VKNA EA P GG+I +++GYQHG+RLA+ G SRV LPL+V+++DNGPGIP+D+ AHLFDPFVT+K +G+GLGLALVAK++GDHGG+++F+S T F+L LP+ ++
Sbjct: 223 RRVAQSGFARHIRFVEKYDPSLPPVYGNRDQLIQVFLNLVKNAAEACPEQGGEIVLSTGYQHGVRLAVTGSESRVHLPLLVTVQDNGPGIPEDIRAHLFDPFVTTKLNGTGLGLALVAKIIGDHGGVIDFESVPKRTVFKLSLPVATD 370
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: A0A1X7Q987_AZOLI (Histidine kinase n=2 Tax=Azospirillum TaxID=191 RepID=A0A1X7Q987_AZOLI) HSP 1 Score: 217 bits (553), Expect = 4.230e-67 Identity = 98/149 (65.77%), Postives = 126/149 (84.56%), Query Frame = 1
Query: 1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPMHSES 447
R +AQ+GF R + FVE YDPSLPPVYGN DQL+QVFLN++KNA EA P TGG+IT+T+ YQHG+R+ALPGG++R+ LPL VS++DNG GIP+D+ ++LFDPFVTSK +G+GLGLALVAK++GDHGG +EFDS T F++ LPM+ ES
Sbjct: 229 RTIAQSGFARKIRFVERYDPSLPPVYGNRDQLVQVFLNLIKNAAEAAPETGGEITLTTAYQHGVRMALPGGDTRLHLPLQVSVQDNGDGIPEDLQSNLFDPFVTSKVNGTGLGLALVAKLIGDHGGTIEFDSQPRRTVFKVSLPMYDES 377
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: UPI0004224EE0 (ATP-binding protein n=1 Tax=Azospirillum halopraeferens TaxID=34010 RepID=UPI0004224EE0) HSP 1 Score: 215 bits (547), Expect = 2.130e-66 Identity = 95/149 (63.76%), Postives = 125/149 (83.89%), Query Frame = 1
Query: 1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPMHSES 447
R+VAQ+GF R + FVE YDPSLPPV+GN DQL+QVFLN++KNA EA P TGG+I +++ YQHG+R+ALPGG+ RV LPL+VS++DNG GIP+D+ HLFD FVT+K +G+GLGLALVAK++GDHGG++EFDS T F++ LPM+ +S
Sbjct: 211 RKVAQSGFARSIRFVERYDPSLPPVWGNRDQLVQVFLNLIKNAAEAAPETGGEIVLSTAYQHGVRMALPGGDKRVHLPLLVSVQDNGDGIPEDLRGHLFDAFVTTKVNGTGLGLALVAKIIGDHGGVIEFDSQPRRTVFKVSLPMYDQS 359
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: A0A7V7CXK1_9PROT (Histidine kinase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A7V7CXK1_9PROT) HSP 1 Score: 214 bits (545), Expect = 2.530e-66 Identity = 98/145 (67.59%), Postives = 123/145 (84.83%), Query Frame = 1
Query: 1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPM 435
RRVAQAGF RHV FVENYDPSLP V+GN DQLIQVFLN+VKNA EA P G +I +T+ +QHG+RLA+PG +SR++LPL++S++DNG GIP+D+ A LFDPFVTSK+ G+GLGLALVAK++GDHGG++EFDS T F++ LPM
Sbjct: 205 RRVAQAGFARHVRFVENYDPSLPQVFGNRDQLIQVFLNMVKNAAEAAPQEGAEIVLTTAFQHGVRLAVPGSDSRMRLPLLISVQDNGQGIPEDLRAQLFDPFVTSKATGTGLGLALVAKIIGDHGGVIEFDSQPRRTVFKVMLPM 349 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100862.1.1 >prot_L-digitata_M_contig100862.1.1 ID=prot_L-digitata_M_contig100862.1.1|Name=mRNA_L-digitata_M_contig100862.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=150bp RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTback to top mRNA from alignment at L-digitata_M_contig100862:3..452+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100862.1.1 ID=mRNA_L-digitata_M_contig100862.1.1|Name=mRNA_L-digitata_M_contig100862.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=450bp|location=Sequence derived from alignment at L-digitata_M_contig100862:3..452+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100862:3..452+ >mRNA_L-digitata_M_contig100862.1.1 ID=mRNA_L-digitata_M_contig100862.1.1|Name=mRNA_L-digitata_M_contig100862.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=450bp|location=Sequence derived from alignment at L-digitata_M_contig100862:3..452+ (Laminaria digitata LdigPH10_18mv male)back to top |