mRNA_L-digitata_M_contig100862.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100862.1.1
Unique NamemRNA_L-digitata_M_contig100862.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: A0A2D7FJ07_9PROT (Histidine kinase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FJ07_9PROT)

HSP 1 Score: 263 bits (672), Expect = 3.360e-85
Identity = 123/149 (82.55%), Postives = 144/149 (96.64%), Query Frame = 1
Query:    1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPMHSES 447
            RRVAQAGFGRH+EFVE+YDPSLP VYGNADQLIQVFLNIVKNACEA+P T GKITI +G+QHGIRLALPGG+SRVQLPLIV+++DNGPGIP+D++A+LFDPFVTSKSDG+GLGL+LVAKV+GDHGGIVEFD+SD GTEFR+RLPMH+++
Sbjct:  219 RRVAQAGFGRHIEFVEHYDPSLPSVYGNADQLIQVFLNIVKNACEALPQTDGKITILTGFQHGIRLALPGGSSRVQLPLIVTVQDNGPGIPEDIAANLFDPFVTSKSDGTGLGLSLVAKVVGDHGGIVEFDTSDQGTEFRVRLPMHADT 367          
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: A0A520NRV4_9PROT (Histidine kinase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NRV4_9PROT)

HSP 1 Score: 233 bits (593), Expect = 1.450e-73
Identity = 111/148 (75.00%), Postives = 128/148 (86.49%), Query Frame = 1
Query:    1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPMHSE 444
            RRVA+AGFG HV F+E YDPSLPPV+GNADQLIQV LNIVKNACEAVP   G+I + + YQHG+RLALPGG +RVQLPL+V+I DNGPGI  D++A+LFDPFVTSK DGSGLG+AL AKV+GDHGGI+EFDSS  GTEFRLRLPM  +
Sbjct:  201 RRVAEAGFGSHVAFLEEYDPSLPPVHGNADQLIQVLLNIVKNACEAVPAINGRIVLRTAYQHGVRLALPGGATRVQLPLLVTITDNGPGILPDLAANLFDPFVTSKPDGSGLGMALAAKVVGDHGGIIEFDSSSEGTEFRLRLPMFQD 348          
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: A0A2S6QC64_9PROT (Histidine kinase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QC64_9PROT)

HSP 1 Score: 226 bits (576), Expect = 8.880e-71
Identity = 106/150 (70.67%), Postives = 127/150 (84.67%), Query Frame = 1
Query:    1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPMHSESG 450
            R+VA+AGFGRHV FVE YDPSLPPV+GNADQLIQ  LN+VKNACEAV    GKI + + YQH +RLALPGG +++QLPL+V++ DNG GI  DV+ +LFDPFVTSKSDGSGLG+AL AKV+GDHGGI+EFD++D GTEFRLRLPM  + G
Sbjct:  219 RQVAEAGFGRHVYFVEEYDPSLPPVHGNADQLIQALLNVVKNACEAVTENEGKIILRTAYQHSVRLALPGGGTQIQLPLLVAVIDNGRGISPDVAENLFDPFVTSKSDGSGLGMALAAKVVGDHGGIIEFDTADTGTEFRLRLPMCQDGG 368          
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: A0A8J3E318_9PROT (Histidine kinase n=1 Tax=Aliidongia dinghuensis TaxID=1867774 RepID=A0A8J3E318_9PROT)

HSP 1 Score: 224 bits (570), Expect = 8.190e-70
Identity = 102/150 (68.00%), Postives = 127/150 (84.67%), Query Frame = 1
Query:    1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPMHSESG 450
            R+VAQAGFG+HV F+E YDPSLPPV GN D+L+QVFLN++KNA EAVP  GG+IT+T+ YQHGIRLA+PG +SRV LPL+VS++DNG GIP+D+ AHLFDPFVT+K +G+GLGLALVAK++GDHGG++EFDS    T FR  LPM +  G
Sbjct:  228 RKVAQAGFGKHVRFIEEYDPSLPPVRGNRDRLVQVFLNLIKNAAEAVPEEGGEITLTTAYQHGIRLAVPGSDSRVHLPLVVSVQDNGAGIPEDLQAHLFDPFVTTKRNGTGLGLALVAKIIGDHGGVIEFDSQPRRTVFRALLPMVTRDG 377          
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: UPI00198B7DE8 (PAS domain-containing protein n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=UPI00198B7DE8)

HSP 1 Score: 219 bits (559), Expect = 2.980e-68
Identity = 103/148 (69.59%), Postives = 124/148 (83.78%), Query Frame = 1
Query:    1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPMHSE 444
            RR+A+ GFGRHV  VENYDPSLPPV+GN DQLIQVFLN+VKNA E+VPH GG++ I + YQHGIRLA+PG ++R  LPL+VSI+DNGPGIP+D+  HLFD FVT+K  G+GLGLALVAK++GDHGGIVEFDS+   T FR+ LPM  E
Sbjct:  221 RRLAENGFGRHVRIVENYDPSLPPVFGNRDQLIQVFLNLVKNAAESVPHEGGEVVIATAYQHGIRLAMPGTDTRRHLPLVVSIQDNGPGIPEDLRPHLFDAFVTTKPSGTGLGLALVAKIVGDHGGIVEFDSTPRRTVFRVMLPMVQE 368          
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: A0A1J5R027_9ZZZZ (Nitrogen regulation protein NR(II) n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5R027_9ZZZZ)

HSP 1 Score: 218 bits (555), Expect = 1.260e-67
Identity = 104/151 (68.87%), Postives = 127/151 (84.11%), Query Frame = 1
Query:    1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPM--HSES 447
            RRVAQAGFGR+V F E YDPSLPPV GN DQL+QVFLN+VKNACEAV + GG+I +++ +QHGIRLA+PGG +R+ LPL+VS++DNGPGIP+D+  HLFDPFVT+K  GSGLGLALVAK++GDHGG+VEFDS    T FR+ LPM  H +S
Sbjct:  221 RRVAQAGFGRNVRFHELYDPSLPPVPGNRDQLVQVFLNLVKNACEAVGNEGGEIVLSTAFQHGIRLAVPGGEARMHLPLVVSVQDNGPGIPEDLRPHLFDPFVTTKVSGSGLGLALVAKIIGDHGGVVEFDSQPRRTVFRVMLPMVQHEDS 371          
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: UPI000DF3D61C (ATP-binding protein n=1 Tax=Oleisolibacter albus TaxID=2171757 RepID=UPI000DF3D61C)

HSP 1 Score: 218 bits (555), Expect = 1.410e-67
Identity = 98/148 (66.22%), Postives = 126/148 (85.14%), Query Frame = 1
Query:    1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPMHSE 444
            RRVAQ+GF RH+ FVE YDPSLPPVYGN DQLIQVFLN+VKNA EA P  GG+I +++GYQHG+RLA+ G  SRV LPL+V+++DNGPGIP+D+ AHLFDPFVT+K +G+GLGLALVAK++GDHGG+++F+S    T F+L LP+ ++
Sbjct:  223 RRVAQSGFARHIRFVEKYDPSLPPVYGNRDQLIQVFLNLVKNAAEACPEQGGEIVLSTGYQHGVRLAVTGSESRVHLPLLVTVQDNGPGIPEDIRAHLFDPFVTTKLNGTGLGLALVAKIIGDHGGVIDFESVPKRTVFKLSLPVATD 370          
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: A0A1X7Q987_AZOLI (Histidine kinase n=2 Tax=Azospirillum TaxID=191 RepID=A0A1X7Q987_AZOLI)

HSP 1 Score: 217 bits (553), Expect = 4.230e-67
Identity = 98/149 (65.77%), Postives = 126/149 (84.56%), Query Frame = 1
Query:    1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPMHSES 447
            R +AQ+GF R + FVE YDPSLPPVYGN DQL+QVFLN++KNA EA P TGG+IT+T+ YQHG+R+ALPGG++R+ LPL VS++DNG GIP+D+ ++LFDPFVTSK +G+GLGLALVAK++GDHGG +EFDS    T F++ LPM+ ES
Sbjct:  229 RTIAQSGFARKIRFVERYDPSLPPVYGNRDQLVQVFLNLIKNAAEAAPETGGEITLTTAYQHGVRMALPGGDTRLHLPLQVSVQDNGDGIPEDLQSNLFDPFVTSKVNGTGLGLALVAKLIGDHGGTIEFDSQPRRTVFKVSLPMYDES 377          
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: UPI0004224EE0 (ATP-binding protein n=1 Tax=Azospirillum halopraeferens TaxID=34010 RepID=UPI0004224EE0)

HSP 1 Score: 215 bits (547), Expect = 2.130e-66
Identity = 95/149 (63.76%), Postives = 125/149 (83.89%), Query Frame = 1
Query:    1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPMHSES 447
            R+VAQ+GF R + FVE YDPSLPPV+GN DQL+QVFLN++KNA EA P TGG+I +++ YQHG+R+ALPGG+ RV LPL+VS++DNG GIP+D+  HLFD FVT+K +G+GLGLALVAK++GDHGG++EFDS    T F++ LPM+ +S
Sbjct:  211 RKVAQSGFARSIRFVERYDPSLPPVWGNRDQLVQVFLNLIKNAAEAAPETGGEIVLSTAYQHGVRMALPGGDKRVHLPLLVSVQDNGDGIPEDLRGHLFDAFVTTKVNGTGLGLALVAKIIGDHGGVIEFDSQPRRTVFKVSLPMYDQS 359          
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Match: A0A7V7CXK1_9PROT (Histidine kinase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A7V7CXK1_9PROT)

HSP 1 Score: 214 bits (545), Expect = 2.530e-66
Identity = 98/145 (67.59%), Postives = 123/145 (84.83%), Query Frame = 1
Query:    1 RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHTGGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFDPFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPM 435
            RRVAQAGF RHV FVENYDPSLP V+GN DQLIQVFLN+VKNA EA P  G +I +T+ +QHG+RLA+PG +SR++LPL++S++DNG GIP+D+ A LFDPFVTSK+ G+GLGLALVAK++GDHGG++EFDS    T F++ LPM
Sbjct:  205 RRVAQAGFARHVRFVENYDPSLPQVFGNRDQLIQVFLNMVKNAAEAAPQEGAEIVLTTAFQHGVRLAVPGSDSRMRLPLLISVQDNGQGIPEDLRAQLFDPFVTSKATGTGLGLALVAKIIGDHGGVIEFDSQPRRTVFKVMLPM 349          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100862.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FJ07_9PROT3.360e-8582.55Histidine kinase n=1 Tax=Rhodospirillaceae bacteri... [more]
A0A520NRV4_9PROT1.450e-7375.00Histidine kinase n=2 Tax=Rhodospirillaceae bacteri... [more]
A0A2S6QC64_9PROT8.880e-7170.67Histidine kinase n=1 Tax=Alphaproteobacteria bacte... [more]
A0A8J3E318_9PROT8.190e-7068.00Histidine kinase n=1 Tax=Aliidongia dinghuensis Ta... [more]
UPI00198B7DE82.980e-6869.59PAS domain-containing protein n=2 Tax=Rhodospirill... [more]
A0A1J5R027_9ZZZZ1.260e-6768.87Nitrogen regulation protein NR(II) n=1 Tax=mine dr... [more]
UPI000DF3D61C1.410e-6766.22ATP-binding protein n=1 Tax=Oleisolibacter albus T... [more]
A0A1X7Q987_AZOLI4.230e-6765.77Histidine kinase n=2 Tax=Azospirillum TaxID=191 Re... [more]
UPI0004224EE02.130e-6663.76ATP-binding protein n=1 Tax=Azospirillum halopraef... [more]
A0A7V7CXK1_9PROT2.530e-6667.59Histidine kinase n=1 Tax=Rhodospirillaceae bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100862contigL-digitata_M_contig100862:3..452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1121033.AUCF01000006_gene4311
Preferred namentrB
PFAMsHATPase_c,HisKA,PAS,PAS_4
Model size450
Max annot lvl204441|Rhodospirillales
KEGG koko:K07708
KEGG Pathwayko02020,map02020
KEGG ModuleM00497
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.5e-67
EggNOG OGsCOG3852@1|root,COG3852@2|Bacteria,1MVN6@1224|Proteobacteria,2TQS1@28211|Alphaproteobacteria,2JQVX@204441|Rhodospirillales
EC2.7.13.3
DescriptionSignal transduction histidine kinase, nitrogen specific
Cds size450
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02022
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.705817-CDS-L-digitata_M_contig100862:2..4521682406611.705817-CDS-L-digitata_M_contig100862:2..452Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100862 3..452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100862.1.1prot_L-digitata_M_contig100862.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100862 3..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100862.1.1

>prot_L-digitata_M_contig100862.1.1 ID=prot_L-digitata_M_contig100862.1.1|Name=mRNA_L-digitata_M_contig100862.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=150bp
RRVAQAGFGRHVEFVENYDPSLPPVYGNADQLIQVFLNIVKNACEAVPHT
GGKITITSGYQHGIRLALPGGNSRVQLPLIVSIRDNGPGIPDDVSAHLFD
PFVTSKSDGSGLGLALVAKVMGDHGGIVEFDSSDAGTEFRLRLPMHSESG
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mRNA from alignment at L-digitata_M_contig100862:3..452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100862.1.1 ID=mRNA_L-digitata_M_contig100862.1.1|Name=mRNA_L-digitata_M_contig100862.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=450bp|location=Sequence derived from alignment at L-digitata_M_contig100862:3..452+ (Laminaria digitata LdigPH10_18mv male)
AGACGGGTAGCCCAGGCGGGTTTTGGCCGCCACGTGGAGTTTGTTGAGAA CTACGATCCTTCGCTCCCGCCGGTATATGGCAATGCGGACCAGTTAATTC AGGTCTTCCTGAATATTGTTAAAAACGCCTGCGAGGCGGTGCCGCACACT GGCGGAAAAATTACGATCACATCCGGTTATCAGCATGGCATCAGACTCGC CCTGCCGGGCGGGAACAGCCGGGTTCAATTGCCGTTGATCGTCAGTATTC GCGATAACGGACCGGGTATTCCGGACGACGTTTCCGCTCATTTGTTCGAT CCCTTCGTTACATCGAAATCTGACGGCTCGGGTCTAGGGTTGGCGCTCGT TGCAAAGGTGATGGGCGATCACGGCGGCATCGTGGAATTCGACTCTTCGG ATGCGGGAACCGAGTTCCGGCTGAGGTTGCCGATGCATTCGGAAAGCGGT
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Coding sequence (CDS) from alignment at L-digitata_M_contig100862:3..452+

>mRNA_L-digitata_M_contig100862.1.1 ID=mRNA_L-digitata_M_contig100862.1.1|Name=mRNA_L-digitata_M_contig100862.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=450bp|location=Sequence derived from alignment at L-digitata_M_contig100862:3..452+ (Laminaria digitata LdigPH10_18mv male)
AGACGGGTAGCCCAGGCGGGTTTTGGCCGCCACGTGGAGTTTGTTGAGAA
CTACGATCCTTCGCTCCCGCCGGTATATGGCAATGCGGACCAGTTAATTC
AGGTCTTCCTGAATATTGTTAAAAACGCCTGCGAGGCGGTGCCGCACACT
GGCGGAAAAATTACGATCACATCCGGTTATCAGCATGGCATCAGACTCGC
CCTGCCGGGCGGGAACAGCCGGGTTCAATTGCCGTTGATCGTCAGTATTC
GCGATAACGGACCGGGTATTCCGGACGACGTTTCCGCTCATTTGTTCGAT
CCCTTCGTTACATCGAAATCTGACGGCTCGGGTCTAGGGTTGGCGCTCGT
TGCAAAGGTGATGGGCGATCACGGCGGCATCGTGGAATTCGACTCTTCGG
ATGCGGGAACCGAGTTCCGGCTGAGGTTGCCGATGCATTCGGAAAGCGGT
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