mRNA_L-digitata_M_contig100839.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100839.1.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE) HSP 1 Score: 254 bits (650), Expect = 1.900e-73 Identity = 145/264 (54.92%), Postives = 182/264 (68.94%), Query Frame = 1
Query: 67 DEGVDWMDAAAMGRGRQNGGDHGHDDTWDEDHDCAEARGRFSPEDLSTGNTFVEVQRKQAGGAPPDERGVPVVLPTQLNERQRVAYDIVRAHLDGDAEREPLRMMVLGTAGTGKSWLVNALSHLLGPRVRCAAPTGIAAFVIGGSTLHSLLKLPIRGGRLLQGESLNKIQISLRGVQYLVIDELSMVSQAQFAWVGRRLRQATGKTEELFGGMSVIMTGDPGQLPPVGGRALHAKDPRDQLNQEGFQAYRSFRNVVILEKVQRQ 858
D+ DWMD A M R + D WD +++ A AR +L G T++ +K A G P +P V P LNERQR YD+VR H + + E EPLRMMVLGTAGTGKS+LV ALS LLG +R AAPTG+AAF+I GSTLHSLL+LP+R GR LQG+SL +Q SL GV+Y++IDELSMVSQ+Q AWV RRLRQ T ++ FGG+S+IMTGD GQL PVGG L+ ++P LN EG+ AY F++V IL++VQRQ
Sbjct: 1042 DQPDDWMDGANMRRRGAAREEQEVDTRWDAEYNWAGARATEVQHELERGPTWIANAKKAAAGTGPATE-IPHVAPDSLNERQRNCYDVVRDHFENERE-EPLRMMVLGTAGTGKSYLVYALSRLLGGFLRRAAPTGMAAFLIAGSTLHSLLRLPVRQGRNLQGQSLKALQNSLTGVKYIIIDELSMVSQSQMAWVDRRLRQGTA-VDKPFGGISLIMTGDLGQLQPVGGTPLYKQNPAAALNVEGYAAYSLFQDVFILDRVQRQ 1302
BLAST of mRNA_L-digitata_M_contig100839.1.1 vs. uniprot
Match: UPI00106C3E43 (ATP-dependent DNA helicase pfh1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C3E43) HSP 1 Score: 182 bits (462), Expect = 2.270e-52 Identity = 97/193 (50.26%), Postives = 131/193 (67.88%), Query Frame = 1
Query: 280 VVLPTQLNERQRVAYDIVRAHLDGDAEREPLRMMVLGTAGTGKSWLVNALSHLLGPRVRCAAPTGIAAFVIGGSTLHSLLKLPIRGGRLLQGESLNKIQISLRGVQYLVIDELSMVSQAQFAWVGRRLRQATGKTEELFGGMSVIMTGDPGQLPPVGGRALHAKDPRDQLNQEGFQAYRSFRNVVILEKVQRQ 858
VV P LN++QR+A+DI+ A + D E EPL M+V GTAGTGK++L++AL +L + A TGIAAF IGG TLHS +LPIR R LQG+SL ++Q+ L G ++L+IDE+SM+ +W+ RLR TGK + FGGMSVI+ GD GQLPPVG R ++ ++ G Y +F +VVILE+V RQ
Sbjct: 11 VVDPGTLNDKQRLAFDIITASMAND-ECEPLHMIVSGTAGTGKTYLISALKQVLQDQCIVTATTGIAAFSIGGQTLHSAAQLPIREYRELQGDSLQRLQLRLEGKRFLIIDEMSMIGHKMLSWLDNRLRAGTGKEDVPFGGMSVILMGDFGQLPPVGDRPMYIAGNGSVISDHGHSMYLTFDHVVILEQVMRQ 202
BLAST of mRNA_L-digitata_M_contig100839.1.1 vs. uniprot
Match: UPI0010699F95 (ATP-dependent DNA helicase PIF1-like isoform X6 n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI0010699F95) HSP 1 Score: 177 bits (448), Expect = 1.130e-47 Identity = 100/221 (45.25%), Postives = 141/221 (63.80%), Query Frame = 1
Query: 220 FVEVQRKQAGGAPPDERGVP--------VVLPTQLNERQRVAYDIVRAHLDGDAEREPLRMMVLGTAGTGKSWLVNALSHLLGPRVRCAAPTGIAAFVIGGSTLHSLLKLPIRGGRLLQGESLNKIQISLRGVQYLVIDELSMVSQAQFAWVGRRLRQATGKTEELFGGMSVIMTGDPGQLPPVGGRALHAKDPRDQLNQEGFQAYRSFRNVVILEKVQRQ 858
++ QRK A +E+G+ VV P LN++QR+A+DI+ A + D E EPL M+V GTAGTGK++L++AL +L + A TGIAAF IGG TL+S +LPIR R LQG+SL ++Q+ L G ++L+IDE+SM+ +W+ RLR TGK + FGGMS+I+ GD GQLPPVG + ++ ++ G Y +F VVILE+V RQ
Sbjct: 104 WISKQRKDA-----EEQGMQYQTGDQQVVVDPGTLNDKQRLAFDIITASMAND-ECEPLHMIVSGTAGTGKTYLISALKQVLQHQCIVTATTGIAAFSIGGQTLYSAAQLPIREYRELQGDSLQRLQLRLEGKRFLIIDEMSMIGHQMLSWLDNRLRAGTGKEDIPFGGMSIILMGDFGQLPPVGDKPMYIAGNGSVISDHGHSMYLTFDYVVILEQVMRQ 318
BLAST of mRNA_L-digitata_M_contig100839.1.1 vs. uniprot
Match: A0A6S7LQ31_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7LQ31_PARCT) HSP 1 Score: 171 bits (434), Expect = 3.620e-47 Identity = 88/186 (47.31%), Postives = 128/186 (68.82%), Query Frame = 1
Query: 310 QRVAYDIVRAHL-DGDAEREPLRMMVLGTAGTGKSWLVNALSHLLGPRVRCAAPTGIAAFVIGGSTLHSLLKLPI--RGGRLLQGESLNKIQISLRGVQYLVIDELSMVSQAQFAWVGRRLRQATGKTEELFGGMSVIMTGDPGQLPPVGGRALHAKDPRDQLNQEGFQAYRSFRNVVILEKVQRQ 858
Q++AYDIV++H D +E+EPL +++ G AGTGKS+L+NA+ +LL + A TG AA+ I G T+HSLLKLPI RG + L G+SL ++Q S+ + Y++IDE SM+ Q F W+ +R +QATG +++FGG S+I+TGDPGQLPPV + + P + + ++G QAY F VV L QR+
Sbjct: 2 QKLAYDIVKSHFHDTSSEKEPLCLIINGVAGTGKSYLINAIRNLLQSKCAVTATTGKAAYNIRGVTVHSLLKLPIGSRGNKDLTGQSLCRLQESVNNIGYIIIDEYSMLGQVTFGWIDKRCKQATGSNDKVFGGKSLILTGDPGQLPPVADKPRYHAKPSNAVGEQGHQAYHKFDKVVKLTVNQRE 187
BLAST of mRNA_L-digitata_M_contig100839.1.1 vs. uniprot
Match: A0A7D9JFR3_PARCT (ATP-dependent DNA helicase n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFR3_PARCT) HSP 1 Score: 177 bits (449), Expect = 3.810e-47 Identity = 93/195 (47.69%), Postives = 133/195 (68.21%), Query Frame = 1
Query: 280 VVLPTQLNERQRVAYDIVRAHLDG-DAEREPLRMMVLGTAGTGKSWLVNALSHLLGPRVRCAAPTGIAAFVIGGSTLHSLLKLPI--RGGRLLQGESLNKIQISLRGVQYLVIDELSMVSQAQFAWVGRRLRQATGKTEELFGGMSVIMTGDPGQLPPVGGRALHAKDPRDQLNQEGFQAYRSFRNVVILEKVQR 855
VV +E Q++AYDIV++H D +E+EPL +++ G AGTGKS+L+NA+ +LL + AA TG AA+ I G T+HSLLKLPI RG + L G+SL ++Q S+ + Y++IDE SM+ Q F W+ +R +QATG +++FGG S+I+TGDPGQLPPV + L+ P + + ++G QAY F VV L QR
Sbjct: 254 VVDINSFSEMQKLAYDIVKSHFDDVSSEKEPLCLIINGVAGTGKSYLINAIRNLLQSKCAVAATTGKAAYNIRGVTVHSLLKLPIGARGNKDLTGQSLCRLQESVNNIGYIIIDEYSMLGQVTFGWIDKRCKQATGSNDKVFGGKSLILTGDPGQLPPVADKPLYHARPSNAVGEQGHQAYHMFDKVVKLTVNQR 448
BLAST of mRNA_L-digitata_M_contig100839.1.1 vs. uniprot
Match: A0A6S7HCV6_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HCV6_PARCT) HSP 1 Score: 172 bits (436), Expect = 5.550e-47 Identity = 91/195 (46.67%), Postives = 130/195 (66.67%), Query Frame = 1
Query: 280 VVLPTQLNERQRVAYDIVRAHLDGDAE-REPLRMMVLGTAGTGKSWLVNALSHLLGPRVRCAAPTGIAAFVIGGSTLHSLLKLPI--RGGRLLQGESLNKIQISLRGVQYLVIDELSMVSQAQFAWVGRRLRQATGKTEELFGGMSVIMTGDPGQLPPVGGRALHAKDPRDQLNQEGFQAYRSFRNVVILEKVQR 855
VV +E Q++AYDIV++H D +EPL +++ G AGTGKS+L+NA+ +LL + A TG AA+ I G T+HSLLKLPI RG + L G+SL ++Q S+ + Y++IDE SM+ Q F W+ +R +QATG +++FGG S+I+TGDPGQLPPV + L+ P + + ++G QAY F VV L QR
Sbjct: 57 VVDINSFSEMQKLAYDIVKSHFDDTPSVKEPLCLIINGVAGTGKSYLINAIRNLLQSKCAVTATTGKAAYNIRGVTVHSLLKLPIGSRGNKDLTGQSLCRLQESVNNIGYIIIDEYSMLGQVTFGWIDKRCKQATGYNDKVFGGRSLILTGDPGQLPPVADKPLYHAKPSNAVGEQGHQAYHMFDKVVKLTVNQR 251
BLAST of mRNA_L-digitata_M_contig100839.1.1 vs. uniprot
Match: A0A6S7IHH9_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IHH9_PARCT) HSP 1 Score: 173 bits (438), Expect = 6.560e-47 Identity = 88/195 (45.13%), Postives = 131/195 (67.18%), Query Frame = 1
Query: 280 VVLPTQLNERQRVAYDIVRAHLDGDA-EREPLRMMVLGTAGTGKSWLVNALSHLLGPRVRCAAPTGIAAFVIGGSTLHSLLKLPI--RGGRLLQGESLNKIQISLRGVQYLVIDELSMVSQAQFAWVGRRLRQATGKTEELFGGMSVIMTGDPGQLPPVGGRALHAKDPRDQLNQEGFQAYRSFRNVVILEKVQR 855
VV + + Q++AY+IV+ H + ++ E+EPL ++++G AGTGKS+L+NA+ +LL + A TG A+F I G T+HSLLKLPI RG + + G+SL ++Q SL G+ Y+++DE SM+ Q F W+ +R +QATG + + GG S I+TGDPGQLPPV + L+ P + ++G+Q YR F VV L QR
Sbjct: 220 VVDISSFSRMQQLAYNIVKTHFEDESPEKEPLFLIIIGEAGTGKSYLINAIRNLLQSKCAVTATTGKASFNIRGVTIHSLLKLPIGTRGNKDVTGQSLCRLQESLNGIDYIIVDEYSMLGQTTFGWIDKRCKQATGHHDRILGGKSFILTGDPGQLPPVADKPLYHPKPSNAFAEQGYQTYRMFNKVVKLTVNQR 414
BLAST of mRNA_L-digitata_M_contig100839.1.1 vs. uniprot
Match: UPI00106C135D (ATP-dependent DNA helicase PIF1-like isoform X5 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C135D) HSP 1 Score: 177 bits (448), Expect = 6.750e-47 Identity = 100/221 (45.25%), Postives = 141/221 (63.80%), Query Frame = 1
Query: 220 FVEVQRKQAGGAPPDERGVP--------VVLPTQLNERQRVAYDIVRAHLDGDAEREPLRMMVLGTAGTGKSWLVNALSHLLGPRVRCAAPTGIAAFVIGGSTLHSLLKLPIRGGRLLQGESLNKIQISLRGVQYLVIDELSMVSQAQFAWVGRRLRQATGKTEELFGGMSVIMTGDPGQLPPVGGRALHAKDPRDQLNQEGFQAYRSFRNVVILEKVQRQ 858
++ QRK A +E+G+ VV P LN++QR+A+DI+ A + D E EPL M+V GTAGTGK++L++AL +L + A TGIAAF IGG TL+S +LPIR R LQG+SL ++Q+ L G ++L+IDE+SM+ +W+ RLR TGK + FGGMS+I+ GD GQLPPVG + ++ ++ G Y +F VVILE+V RQ
Sbjct: 270 WISKQRKDA-----EEQGMQYQTGDQQVVVDPGTLNDKQRLAFDIITASMAND-ECEPLHMIVSGTAGTGKTYLISALKQVLQHQCIVTATTGIAAFSIGGQTLYSAAQLPIREYRELQGDSLQRLQLRLEGKRFLIIDEMSMIGHQMLSWLDNRLRAGTGKEDIPFGGMSIILMGDFGQLPPVGDKPMYIAGNGSVISDHGHSMYLTFDYVVILEQVMRQ 484
BLAST of mRNA_L-digitata_M_contig100839.1.1 vs. uniprot
Match: UPI001CF33195 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF33195) HSP 1 Score: 171 bits (433), Expect = 7.070e-47 Identity = 94/218 (43.12%), Postives = 141/218 (64.68%), Query Frame = 1
Query: 217 TFVEVQRKQAGGAPPDERGVPVVLPTQLNERQRVAYD--IVRAHL-DGDAEREPLRMMVLGTAGTGKSWLVNALSHLLGPRVRCAAPTGIAAFVIGGSTLHSLLKLPI--RGGRLLQGESLNKIQISLRGVQYLVIDELSMVSQAQFAWVGRRLRQATGKTEELFGGMSVIMTGDPGQLPPVGGRALHAKDPRDQLNQEGFQAYRSFRNVVILEKVQR 855
T+++ Q+ QA P VV +E Q +AY+ IV+ H D ++EPL ++++G AGTGKS+L+NAL++LLG R A TG A++ I G T+HSLLKLP+ RG + L G+SL ++Q +L V+Y++IDE SM+ Q F W+ +R +QATG +++ GG S+I+ GDPGQLPPV + + P +++ ++G+Q YR F VV L QR
Sbjct: 3 TWIKTQKDQAH--PITHEAYEVVDINSFSEMQNLAYNNFIVKNHCHDTSCDKEPLCLIIIGVAGTGKSYLINALTNLLGSRCAVTATTGKASYNIKGITIHSLLKLPVGPRGNKDLTGQSLCRLQENLAEVEYILIDEYSMLGQTTFGWIDKRCKQATGCYDKILGGKSLILIGDPGQLPPVADKPFYHSKPSNEVGEQGYQTYRMFDKVVKLTVNQR 218
BLAST of mRNA_L-digitata_M_contig100839.1.1 vs. uniprot
Match: A0A7D9K9I3_PARCT (ATP-dependent DNA helicase (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9K9I3_PARCT) HSP 1 Score: 176 bits (445), Expect = 1.150e-46 Identity = 92/195 (47.18%), Postives = 134/195 (68.72%), Query Frame = 1
Query: 280 VVLPTQLNERQRVAYDIVRAHLDG-DAEREPLRMMVLGTAGTGKSWLVNALSHLLGPRVRCAAPTGIAAFVIGGSTLHSLLKLPI--RGGRLLQGESLNKIQISLRGVQYLVIDELSMVSQAQFAWVGRRLRQATGKTEELFGGMSVIMTGDPGQLPPVGGRALHAKDPRDQLNQEGFQAYRSFRNVVILEKVQR 855
VV +E Q++AY+IV++H D +E+EPL +++ G AGTGKS+L+NA+ +LL + AA TG AA+ I G T+HSLLKLPI RG + L G+SL ++Q S+ + Y++IDE SM+ Q F W+ +R +QATG +++FGG S+I+TGDPGQLPPV + L+ P + + ++G+QAY F VV L QR
Sbjct: 353 VVDINSFSEMQKLAYNIVKSHFDDTSSEKEPLCLIINGVAGTGKSYLINAIRNLLQSKCAVAATTGKAAYNIRGVTVHSLLKLPIGSRGKKDLTGQSLCRLQESVNNIGYIIIDEYSMLGQVTFGWIDKRCKQATGYNDKVFGGKSLILTGDPGQLPPVADKPLYHAKPSNAVGEQGYQAYHMFDKVVKLTVNQR 547 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100839.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100839.1.1 >prot_L-digitata_M_contig100839.1.1 ID=prot_L-digitata_M_contig100839.1.1|Name=mRNA_L-digitata_M_contig100839.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=286bp DRLREIRSENQPEMDDPEAFEADEGVDWMDAAAMGRGRQNGGDHGHDDTWback to top mRNA from alignment at L-digitata_M_contig100839:18..875- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100839.1.1 ID=mRNA_L-digitata_M_contig100839.1.1|Name=mRNA_L-digitata_M_contig100839.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=858bp|location=Sequence derived from alignment at L-digitata_M_contig100839:18..875- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100839:18..875- >mRNA_L-digitata_M_contig100839.1.1 ID=mRNA_L-digitata_M_contig100839.1.1|Name=mRNA_L-digitata_M_contig100839.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=858bp|location=Sequence derived from alignment at L-digitata_M_contig100839:18..875- (Laminaria digitata LdigPH10_18mv male)back to top |