mRNA_L-digitata_M_contig100830.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100830.1.1
Unique NamemRNA_L-digitata_M_contig100830.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100830.1.1 vs. uniprot
Match: D7FHD2_ECTSI (PRP1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD2_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.940e-13
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 LRQARLLLKSVTSTNPKHGPGWIAAARVEEYAGKIVQ 111
            + +ARLLLKSVTSTNPKHGPGWIAAARVEE+AGKIVQ
Sbjct:  163 IEKARLLLKSVTSTNPKHGPGWIAAARVEEFAGKIVQ 199
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BLAST of mRNA_L-digitata_M_contig100830.1.1 vs. uniprot
Match: A0A6H5L0W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W4_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.120e-13
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    7 QARLLLKSVTSTNPKHGPGWIAAARVEEYAGKIVQ 111
            QARLLLKSVTSTNPKHGPGWIAAARVEE+AGKI +
Sbjct:    4 QARLLLKSVTSTNPKHGPGWIAAARVEEFAGKIAR 38
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BLAST of mRNA_L-digitata_M_contig100830.1.1 vs. uniprot
Match: A0A7S2FWZ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FWZ0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 7.940e-13
Identity = 30/34 (88.24%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 LRQARLLLKSVTSTNPKHGPGWIAAARVEEYAGK 102
            +++ARLLLKSVTSTNPKHGPGWIAAARVEE+AGK
Sbjct:   45 IKKARLLLKSVTSTNPKHGPGWIAAARVEEFAGK 78
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BLAST of mRNA_L-digitata_M_contig100830.1.1 vs. uniprot
Match: H3G510_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G510_PHYRM)

HSP 1 Score: 63.2 bits (152), Expect = 4.040e-12
Identity = 28/37 (75.68%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 LRQARLLLKSVTSTNPKHGPGWIAAARVEEYAGKIVQ 111
            +++ARLLL+SVT TNPKHGPGWIAA R+EE AGKI Q
Sbjct:   34 IKKARLLLRSVTLTNPKHGPGWIAATRLEEVAGKIAQ 70
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BLAST of mRNA_L-digitata_M_contig100830.1.1 vs. uniprot
Match: A0A3M6VD23_9STRA (PRP1_N domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VD23_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.000e-12
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 LRQARLLLKSVTSTNPKHGPGWIAAARVEEYAGKIVQ 111
            +++ARLLLKSVT TNPKHGPGW+AAAR+EE AGKIVQ
Sbjct:  308 IKKARLLLKSVTMTNPKHGPGWVAAARLEEVAGKIVQ 344
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BLAST of mRNA_L-digitata_M_contig100830.1.1 vs. uniprot
Match: A0A7S1U7V1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7V1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.000e-12
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 LRQARLLLKSVTSTNPKHGPGWIAAARVEEYAGKIVQ 111
            +++A+LLLKSVTSTNP+H PGWIAAARVEEYAGKI Q
Sbjct:  214 IKKAQLLLKSVTSTNPRHAPGWIAAARVEEYAGKIAQ 250
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BLAST of mRNA_L-digitata_M_contig100830.1.1 vs. uniprot
Match: A0A835YM25_9STRA (PRP1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM25_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.000e-12
Identity = 29/36 (80.56%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 LRQARLLLKSVTSTNPKHGPGWIAAARVEEYAGKIV 108
            + +ARLL++SVTSTNPKHGPGWIAAAR+EEYAGK+V
Sbjct:  152 IEKARLLMRSVTSTNPKHGPGWIAAARLEEYAGKLV 187
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BLAST of mRNA_L-digitata_M_contig100830.1.1 vs. uniprot
Match: A0A2P4Y3Q2_9STRA (Pre-mRNA-processing factor (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3Q2_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.030e-11
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 LRQARLLLKSVTSTNPKHGPGWIAAARVEEYAGKIVQ 111
            +++ARLLL+SVT TNPKHGPGWIAAAR+EE AGKIVQ
Sbjct:  298 IKKARLLLRSVTMTNPKHGPGWIAAARLEEVAGKIVQ 334
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BLAST of mRNA_L-digitata_M_contig100830.1.1 vs. uniprot
Match: A0A8K1FJ36_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJ36_PYTOL)

HSP 1 Score: 66.6 bits (161), Expect = 1.120e-11
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 LRQARLLLKSVTSTNPKHGPGWIAAARVEEYAGKIVQ 111
            +++ARLLL+SVT TNPKHGPGWIAAAR+EE AGKIVQ
Sbjct:  306 IKKARLLLRSVTMTNPKHGPGWIAAARLEEVAGKIVQ 342
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BLAST of mRNA_L-digitata_M_contig100830.1.1 vs. uniprot
Match: K3WCC0_GLOUD (PRP1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCC0_GLOUD)

HSP 1 Score: 66.6 bits (161), Expect = 1.120e-11
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 LRQARLLLKSVTSTNPKHGPGWIAAARVEEYAGKIVQ 111
            +++ARLLL+SVT TNPKHGPGWIAAAR+EE AGKIVQ
Sbjct:  317 IKKARLLLRSVTMTNPKHGPGWIAAARLEEVAGKIVQ 353
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100830.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHD2_ECTSI1.940e-1389.19PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L0W4_9PHAE3.120e-1391.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2FWZ0_9STRA7.940e-1388.24Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
H3G510_PHYRM4.040e-1275.68Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A3M6VD23_9STRA6.000e-1281.08PRP1_N domain-containing protein n=7 Tax=Peronospo... [more]
A0A7S1U7V1_9STRA6.000e-1281.08Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835YM25_9STRA6.000e-1280.56PRP1_N domain-containing protein n=1 Tax=Tribonema... [more]
A0A2P4Y3Q2_9STRA1.030e-1181.08Pre-mRNA-processing factor (Fragment) n=1 Tax=Phyt... [more]
A0A8K1FJ36_PYTOL1.120e-1181.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WCC0_GLOUD1.120e-1181.08PRP1_N domain-containing protein n=1 Tax=Globispor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100830contigL-digitata_M_contig100830:93..224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FHD2
PFAMsPRP1_N,TPR_14,TPR_16,TPR_19,TPR_8,ubiquitin
Model size132
Max annot lvl2759|Eukaryota
KEGG koko:K12855
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003824,GO:0004553,GO:0004565,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015030,GO:0015925,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016798,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0030532,GO:0031047,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035257,GO:0035258,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046540,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050681,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051427,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065003,GO:0065007,GO:0070013,GO:0070920,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0080188,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903798,GO:1903800,GO:1990904,GO:2000112,GO:2000628,GO:2000630,GO:2000634,GO:2000636,GO:2000637,GO:2001141
Exons1
Evalue3.17e-14
EggNOG OGsKOG0495@1|root,KOG0495@2759|Eukaryota
Descriptionspliceosomal tri-snRNP complex assembly
Cds size132
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.5041952-CDS-L-digitata_M_contig100830:92..2241682406611.5041952-CDS-L-digitata_M_contig100830:92..224Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100830 93..224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100830.1.1prot_L-digitata_M_contig100830.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100830 93..224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100830.1.1

>prot_L-digitata_M_contig100830.1.1 ID=prot_L-digitata_M_contig100830.1.1|Name=mRNA_L-digitata_M_contig100830.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=44bp
LRQARLLLKSVTSTNPKHGPGWIAAARVEEYAGKIVQVGGWVG*
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mRNA from alignment at L-digitata_M_contig100830:93..224+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100830.1.1 ID=mRNA_L-digitata_M_contig100830.1.1|Name=mRNA_L-digitata_M_contig100830.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=132bp|location=Sequence derived from alignment at L-digitata_M_contig100830:93..224+ (Laminaria digitata LdigPH10_18mv male)
CTGCGACAGGCGCGCCTCTTGTTAAAGAGCGTGACCTCAACCAACCCTAA
ACACGGCCCGGGCTGGATCGCCGCTGCTCGCGTGGAGGAGTACGCCGGAA
AAATCGTACAGGTGGGGGGGTGGGTGGGTTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100830:93..224+

>mRNA_L-digitata_M_contig100830.1.1 ID=mRNA_L-digitata_M_contig100830.1.1|Name=mRNA_L-digitata_M_contig100830.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=132bp|location=Sequence derived from alignment at L-digitata_M_contig100830:93..224+ (Laminaria digitata LdigPH10_18mv male)
CTGCGACAGGCGCGCCTCTTGTTAAAGAGCGTGACCTCAACCAACCCTAA
ACACGGCCCGGGCTGGATCGCCGCTGCTCGCGTGGAGGAGTACGCCGGAA
AAATCGTACAGGTGGGGGGGTGGGTGGGTTAA
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