mRNA_L-digitata_M_contig100820.1.3 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100820.1.3
Unique NamemRNA_L-digitata_M_contig100820.1.3
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100820.1.3 vs. uniprot
Match: B7ZGM5_9PHAE (Putative vanadium-dependent bromoperoxidase 7 (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM5_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 4.970e-61
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1 
Query:    1 QAFVGFEAGQKCFPNPVESDDGGLARVPYVPTGTEFLEDCVDKDGNKTTGLTIEGELNKVASNVIIGRSHLGVHWRMDGVYGALMGETSAVRRLQQ 288
            +AFVGFEAGQKCFPNPVESDDGGLARVPYVPTGTEFLEDCVDKDGNKTTGLTIEGELNKVASNVIIGRSHLGVHWRMDGVYGALMGETSAVRRLQQ
Sbjct:  247 KAFVGFEAGQKCFPNPVESDDGGLARVPYVPTGTEFLEDCVDKDGNKTTGLTIEGELNKVASNVIIGRSHLGVHWRMDGVYGALMGETSAVRRLQQ 342
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BLAST of mRNA_L-digitata_M_contig100820.1.3 vs. uniprot
Match: B7ZGM1_9PHAE (Putative vanadium-dependent bromoperoxidase 3 n=4 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM1_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 2.070e-56
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 1 
Query:    1 QAFVGFEAGQKCFPNPVESDDGGLARVPYVPTGTEFLEDCVDKDGNKTTGLTIEGELNKVASNVIIGRSHLGVHWRMDGVYGALMGETSAVRRLQQ 288
            +AFVGFEAGQKCFPN VESDDGGLARVPYVPTGTEFLEDCVDKDGNKTTGLTIEGELNKVASNVIIGRSHLGVHWRMDGV GALMGETSAVRRLQQ
Sbjct:  464 KAFVGFEAGQKCFPNLVESDDGGLARVPYVPTGTEFLEDCVDKDGNKTTGLTIEGELNKVASNVIIGRSHLGVHWRMDGVSGALMGETSAVRRLQQ 559
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BLAST of mRNA_L-digitata_M_contig100820.1.3 vs. uniprot
Match: A0A3G3BM34_SACJA (Vanadium-dependent bromine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM34_SACJA)

HSP 1 Score: 148 bits (374), Expect = 9.910e-40
Identity = 66/96 (68.75%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    1 QAFVGFEAGQKCFPNPVESDDGGLARVPYVPTGTEFLEDCVDKDGNKTTGLTIEGELNKVASNVIIGRSHLGVHWRMDGVYGALMGETSAVRRLQQ 288
            +AF+GFEAGQ+CFP+PV S++ G  R+PYVP+G E + +C++  G K  GLT EGELNKV++NV+IGRSHLGVHWRMDGVYGAL+GE SAVRRLQQ
Sbjct:  497 KAFLGFEAGQRCFPDPVVSNNEGTERIPYVPSGREIVGECINDKGKKVDGLTYEGELNKVSANVLIGRSHLGVHWRMDGVYGALVGEVSAVRRLQQ 592
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BLAST of mRNA_L-digitata_M_contig100820.1.3 vs. uniprot
Match: A0A411NJW8_SACJA (Vanadium-dependent bromoperoxidase (Fragment) n=3 Tax=Saccharina japonica TaxID=88149 RepID=A0A411NJW8_SACJA)

HSP 1 Score: 148 bits (374), Expect = 1.050e-39
Identity = 66/96 (68.75%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    1 QAFVGFEAGQKCFPNPVESDDGGLARVPYVPTGTEFLEDCVDKDGNKTTGLTIEGELNKVASNVIIGRSHLGVHWRMDGVYGALMGETSAVRRLQQ 288
            +AF+GFEAGQ+CFP+PV S++ G  R+PYVP+G E + +C++  G K  GLT EGELNKV++NV+IGRSHLGVHWRMDGVYGAL+GE SAVRRLQQ
Sbjct:  508 KAFLGFEAGQRCFPDPVVSNNEGTERIPYVPSGREIVGECINDKGKKVDGLTYEGELNKVSANVLIGRSHLGVHWRMDGVYGALVGEVSAVRRLQQ 603
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BLAST of mRNA_L-digitata_M_contig100820.1.3 vs. uniprot
Match: Q7X9V0_9PHAE (Vanadium-dependent bromoperoxidase 2 n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7X9V0_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.320e-38
Identity = 64/96 (66.67%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    1 QAFVGFEAGQKCFPNPVESDDGGLARVPYVPTGTEFLEDCVDKDGNKTTGLTIEGELNKVASNVIIGRSHLGVHWRMDGVYGALMGETSAVRRLQQ 288
            +AF+G+EAGQKCFPNPV S+D G  R+ Y P+G E + +CV++ G    GLT EGELNK+++NV++GRSH+GVHWRMDGVYGALMGETS VRRLQQ
Sbjct:  498 KAFLGYEAGQKCFPNPVVSNDEGTKRIKYKPSGREIVGECVNEKGKLVEGLTYEGELNKISANVLLGRSHIGVHWRMDGVYGALMGETSCVRRLQQ 593
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BLAST of mRNA_L-digitata_M_contig100820.1.3 vs. uniprot
Match: K7ZUA3_ASCNO (Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=K7ZUA3_ASCNO)

HSP 1 Score: 136 bits (342), Expect = 2.340e-35
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:    1 QAFVGFEAGQKCFPNPVESDDGGLARVPYVPTGTEFLEDCVDKDGNKTTGLTIEGELNKVASNVIIGRSHLGVHWRMDGVYGALMGETSAVRRLQQ 288
            +AF+GFE GQ+CFP+P+ S+D G  R+P+VP+  + +  C+++DG +  GLT EGELNKV SNV IGRSHLGVHWRMDGV+GA MGE  A+RRLQQ
Sbjct:  464 KAFLGFELGQRCFPSPMISNDAGTDRIPFVPSDGDRVGTCINEDGEEEVGLTYEGELNKVTSNVAIGRSHLGVHWRMDGVFGAEMGEAGAIRRLQQ 559
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BLAST of mRNA_L-digitata_M_contig100820.1.3 vs. uniprot
Match: D8LTP5_ECTSI (Vanadium-dependent bromoperoxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP5_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.280e-31
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    1 QAFVGFEAGQKCFPNP-VESDDGGLARVPYVPTGTEFLEDCVDKDGNKTTGLTIEGELNKVASNVIIGRSHLGVHWRMDGVYGALMGETSAVRRLQQ 288
            +AF+GFE GQ+C+    V S+D G  R+ YVP   E    C+D++G +  GLT EGELNKVASNVIIGRSH+GVH+RMDGVYGALMGETSAVRRLQQ
Sbjct:  468 KAFLGFELGQRCYLGDLVVSNDEGTKRIEYVPRKGET---CIDQNGREVQGLTYEGELNKVASNVIIGRSHIGVHYRMDGVYGALMGETSAVRRLQQ 561
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BLAST of mRNA_L-digitata_M_contig100820.1.3 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.100e-18
Identity = 50/96 (52.08%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:    1 QAFVGFEAGQKCFPNPVESDDGGLARVPYVPTGTEFLEDCVDKDGNKTTGLTIEGELNKVASNVIIGRSHLGVHWRMDGVYGALMGETSAVRRLQQ 288
            +A VG E G  CF +PV  DD GL  +PY  TG          DGN    LT EGE+NK+A NV +GR+ LGVHWR+D   G L+GET+AVR LQQ
Sbjct:  495 KALVGLERGSVCFNDPVFPDDEGLTLLPY--TGD---------DGNNC--LTFEGEINKLAVNVALGRNMLGVHWRIDSELGLLLGETAAVRILQQ 577
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BLAST of mRNA_L-digitata_M_contig100820.1.3 vs. uniprot
Match: A0A7S8FCY0_9BACT (Uncharacterized protein n=1 Tax=Candidatus Nitrospira kreftii TaxID=2652173 RepID=A0A7S8FCY0_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 8.980e-10
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:  121 VDKDGNKT----TG--LTIEGELNKVASNVIIGRSHLGVHWRMDGVYGALMGETSAVRRLQ 285
            VDK G++T    TG  LTIEGELNK+ASN+ IGR+  GVHWR DG Y   +GE  A++ L+
Sbjct:  472 VDKTGHETLMAYTGGVLTIEGELNKLASNIAIGRNIAGVHWRSDGTYSLQLGEQVAIKLLE 532
[Close]
BLAST of mRNA_L-digitata_M_contig100820.1.3 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 62.0 bits (149), Expect = 4.320e-9
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  151 LTIEGELNKVASNVIIGRSHLGVHWRMDGVYGALMGETSAVRRLQQ 288
            LT EGE+NK A+NV +GR+ +GVHWRMD   G L+GET AVR L Q
Sbjct:  509 LTFEGEINKYAANVALGRNWMGVHWRMDAQEGLLLGETVAVRILMQ 554
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100820.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7ZGM5_9PHAE4.970e-6198.96Putative vanadium-dependent bromoperoxidase 7 (Fra... [more]
B7ZGM1_9PHAE2.070e-5696.88Putative vanadium-dependent bromoperoxidase 3 n=4 ... [more]
A0A3G3BM34_SACJA9.910e-4068.75Vanadium-dependent bromine peroxidase n=1 Tax=Sacc... [more]
A0A411NJW8_SACJA1.050e-3968.75Vanadium-dependent bromoperoxidase (Fragment) n=3 ... [more]
Q7X9V0_9PHAE1.320e-3866.67Vanadium-dependent bromoperoxidase 2 n=2 Tax=Lamin... [more]
K7ZUA3_ASCNO2.340e-3562.50Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascop... [more]
D8LTP5_ECTSI1.280e-3165.98Vanadium-dependent bromoperoxidase n=2 Tax=Ectocar... [more]
Q4LDE6_9PHAE5.100e-1852.08Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
A0A7S8FCY0_9BACT8.980e-1055.74Uncharacterized protein n=1 Tax=Candidatus Nitrosp... [more]
A0A3G3BM28_SACJA4.320e-963.04Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100820contigL-digitata_M_contig100820:2..882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTP5
Model size294
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.1e-32
EggNOG OGs2EKT6@1|root,2SQKZ@2759|Eukaryota
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.4225268-CDS-L-digitata_M_contig100820:1..1181682406611.4225268-CDS-L-digitata_M_contig100820:1..118Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100820 2..118 -
1682406611.4323087-CDS-L-digitata_M_contig100820:705..8821682406611.4323087-CDS-L-digitata_M_contig100820:705..882Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100820 706..882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100820.1.3prot_L-digitata_M_contig100820.1.3Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100820 2..882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100820.1.3

>prot_L-digitata_M_contig100820.1.3 ID=prot_L-digitata_M_contig100820.1.3|Name=mRNA_L-digitata_M_contig100820.1.3|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=98bp
QAFVGFEAGQKCFPNPVESDDGGLARVPYVPTGTEFLEDCVDKDGNKTTG
LTIEGELNKVASNVIIGRSHLGVHWRMDGVYGALMGETSAVRRLQQVR
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mRNA from alignment at L-digitata_M_contig100820:2..882-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100820.1.3 ID=mRNA_L-digitata_M_contig100820.1.3|Name=mRNA_L-digitata_M_contig100820.1.3|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=881bp|location=Sequence derived from alignment at L-digitata_M_contig100820:2..882- (Laminaria digitata LdigPH10_18mv male)
CAGGCGTTTGTCGGGTTCGAGGCCGGGCAGAAGTGCTTCCCCAACCCCGT
AGAGTCGGACGACGGGGGGCTTGCGAGGGTGCCCTATGTGCCGACCGGAA
CTGAGTTCCTGGAAGACTGCGTGGACAAGGACGGCAACAAGACCACCGGC
CTCACTATTGAAGGAGAGCTCAACAAGGTGAGGAAGACCAACTAGTTTTG
GGTTTGTTTTTGTGCGCATACGGGGTATGCGCGGGACGAGGCGGGTGGTG
TTTGGTTGGTCTCAATGGGGAAGAGTGCATGGGACGAGGCGGGATGGTGT
TTGGTTGGTCTGAACAGGGCGCAAATGTGGGGCGTTTCCCAGCGCCACCA
GTCGATAAAAATGATCGCTTTCTCTACGCACATGGTATGAAGAATGGAAT
GAGACCATTCCATCCATTTCTACGTTGATTCGGCCTGTCGACCGAGGCAA
CCCCCTAATGCGGACACCCTCGGGTTTTACTGCCCTGCGATATAGCTTCC
AAGAGCTAAGCAGGAGGACGCTCGTCTATAAACAGGTCCTTCGGTCTTAC
TGCCCCCCATCTTCACGGCATGTGAAACTATTCGTTTCAAGGAAGTAACG
GGTGCTTTTCATATGATATCCGTTGCAGGAGCCAATGGCGTGCCTTTGCA
AGTCGTGGAAGCAAAAGAGACACCACTCCGTCTCCCTGCAGTTGCTCGTT
GATCTGATGACTGCCTGCACCCTCGTCCCTGTCCATATTCTTCCTTTCCT
GTGCCACAAATCAGGTGGCTTCCAACGTGATCATCGGCAGGTCGCACCTC
GGTGTTCACTGGAGGATGGATGGCGTTTACGGCGCCCTCATGGGAGAGAC
TAGCGCCGTCCGCCGCTTGCAGCAGGTGCGT
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Coding sequence (CDS) from alignment at L-digitata_M_contig100820:2..882-

>mRNA_L-digitata_M_contig100820.1.3 ID=mRNA_L-digitata_M_contig100820.1.3|Name=mRNA_L-digitata_M_contig100820.1.3|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=294bp|location=Sequence derived from alignment at L-digitata_M_contig100820:2..882- (Laminaria digitata LdigPH10_18mv male)
CAGGCGTTTGTCGGGTTCGAGGCCGGGCAGAAGTGCTTCCCCAACCCCGT
AGAGTCGGACGACGGGGGGCTTGCGAGGGTGCCCTATGTGCCGACCGGAA
CTGAGTTCCTGGAAGACTGCGTGGACAAGGACGGCAACAAGACCACCGGC
CTCACTATTGAAGGAGAGCTCAACAAGGTGGCTTCCAACGTGATCATCGG
CAGGTCGCACCTCGGTGTTCACTGGAGGATGGATGGCGTTTACGGCGCCC
TCATGGGAGAGACTAGCGCCGTCCGCCGCTTGCAGCAGGTGCGT
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