mRNA_L-digitata_M_contig100819.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100819.3.1
Unique NamemRNA_L-digitata_M_contig100819.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100819.3.1 vs. uniprot
Match: A0A7H0VIY3_9FLAO (EamA family transporter n=1 Tax=Croceimicrobium hydrocarbonivorans TaxID=2761580 RepID=A0A7H0VIY3_9FLAO)

HSP 1 Score: 57.4 bits (137), Expect = 1.210e-8
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1
Query:    1 MNKSTKIKAHLALVGVALIYGLNYSVAKDVMPNFV 105
            M    KIKAHLAL+GVALIYGLNYS+AKDVMP ++
Sbjct:    1 MRDLDKIKAHLALLGVALIYGLNYSIAKDVMPEYL 35          
BLAST of mRNA_L-digitata_M_contig100819.3.1 vs. uniprot
Match: A0A2N2ZT76_9BACT (EamA/RhaT family transporter (Fragment) n=1 Tax=Bacteroidetes bacterium HGW-Bacteroidetes-12 TaxID=2013680 RepID=A0A2N2ZT76_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 5.730e-8
Identity = 23/32 (71.88%), Postives = 25/32 (78.12%), Query Frame = 1
Query:   10 STKIKAHLALVGVALIYGLNYSVAKDVMPNFV 105
            S  +K HLAL G  LIYG NYS+AKDVMPNFV
Sbjct:    2 SNNLKPHLALFGANLIYGANYSIAKDVMPNFV 33          
BLAST of mRNA_L-digitata_M_contig100819.3.1 vs. uniprot
Match: A0A5C6RQD5_9FLAO (DMT family transporter n=1 Tax=Vicingus serpentipes TaxID=1926625 RepID=A0A5C6RQD5_9FLAO)

HSP 1 Score: 52.0 bits (123), Expect = 1.030e-6
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 1
Query:   10 STKIKAHLALVGVALIYGLNYSVAKDVMPNFV 105
            ST +KAHLA++G  LIYG+NYS+AKDVMP ++
Sbjct:    2 STNLKAHLAILGANLIYGINYSIAKDVMPAYI 33          
BLAST of mRNA_L-digitata_M_contig100819.3.1 vs. uniprot
Match: G8R443_OWEHD (Putative permease, DMT superfamily n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / CIP 108786 / JCM 12287 / NRRL B-23963 / UST20020801) TaxID=926562 RepID=G8R443_OWEHD)

HSP 1 Score: 50.8 bits (120), Expect = 2.670e-6
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 1
Query:   10 STKIKAHLALVGVALIYGLNYSVAKDVMPNFV 105
            S K+ AH AL  VALIYGLNYS+AKDVMP F+
Sbjct:    2 SPKLLAHFALFAVALIYGLNYSIAKDVMPAFI 33          
BLAST of mRNA_L-digitata_M_contig100819.3.1 vs. uniprot
Match: A0A6N6M720_9FLAO (DMT family transporter n=1 Tax=Salibacter halophilus TaxID=1803916 RepID=A0A6N6M720_9FLAO)

HSP 1 Score: 50.8 bits (120), Expect = 2.690e-6
Identity = 24/35 (68.57%), Postives = 26/35 (74.29%), Query Frame = 1
Query:    1 MNKSTKIKAHLALVGVALIYGLNYSVAKDVMPNFV 105
            M+    I AHLAL G  LIYGLNY +AKDVMPNFV
Sbjct:    1 MSDKNVIPAHLALFGANLIYGLNYILAKDVMPNFV 35          
BLAST of mRNA_L-digitata_M_contig100819.3.1 vs. uniprot
Match: A0A2A5H9Y0_9FLAO (EamA family transporter n=2 Tax=unclassified Flavobacteriales TaxID=403978 RepID=A0A2A5H9Y0_9FLAO)

HSP 1 Score: 50.1 bits (118), Expect = 5.040e-6
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 1
Query:   10 STKIKAHLALVGVALIYGLNYSVAKDVMPNFV 105
            S  +K HLAL G  LIYG NYS+AKD+MPNF+
Sbjct:    2 SNNLKPHLALFGANLIYGANYSIAKDLMPNFI 33          
BLAST of mRNA_L-digitata_M_contig100819.3.1 vs. uniprot
Match: A0A7K3WRT3_9FLAO (DMT family transporter n=1 Tax=Cryomorpha ignava TaxID=101383 RepID=A0A7K3WRT3_9FLAO)

HSP 1 Score: 48.9 bits (115), Expect = 1.310e-5
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 1
Query:   10 STKIKAHLALVGVALIYGLNYSVAKDVMPNFV 105
            + + KAHLAL+ VALIYGLNY VAK+VMP ++
Sbjct:    2 TARTKAHLALLAVALIYGLNYIVAKEVMPKYI 33          
BLAST of mRNA_L-digitata_M_contig100819.3.1 vs. uniprot
Match: A0A2N2YUS1_9BACT (EamA/RhaT family transporter n=1 Tax=Bacteroidetes bacterium HGW-Bacteroidetes-17 TaxID=2013685 RepID=A0A2N2YUS1_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 1.780e-5
Identity = 20/32 (62.50%), Postives = 27/32 (84.38%), Query Frame = 1
Query:   10 STKIKAHLALVGVALIYGLNYSVAKDVMPNFV 105
            + K+KAHLAL+G  LIYGLNY VAK +MP+++
Sbjct:    2 NNKVKAHLALIGGNLIYGLNYVVAKGIMPDYI 33          
BLAST of mRNA_L-digitata_M_contig100819.3.1 vs. uniprot
Match: A0A2D8WG05_9FLAO (EamA family transporter (Fragment) n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2D8WG05_9FLAO)

HSP 1 Score: 48.1 bits (113), Expect = 2.290e-5
Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 1
Query:   10 STKIKAHLALVGVALIYGLNYSVAKDVMPNFV 105
            S KI AH+A+    LIYG+NY+VAKDVMPN++
Sbjct:    2 SKKILAHIAIFSANLIYGINYTVAKDVMPNYI 33          
BLAST of mRNA_L-digitata_M_contig100819.3.1 vs. uniprot
Match: A0A7V9MPB0_9BACT (DMT family transporter n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V9MPB0_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 2.450e-5
Identity = 22/35 (62.86%), Postives = 30/35 (85.71%), Query Frame = 1
Query:    1 MNKSTKIKAHLALVGVALIYGLNYSVAKDVMPNFV 105
            M+KS  IKAHL+L+   +IYG+NYSVAKDVMP+++
Sbjct:    1 MDKSY-IKAHLSLLAANIIYGINYSVAKDVMPSYI 34          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100819.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A7H0VIY3_9FLAO1.210e-874.29EamA family transporter n=1 Tax=Croceimicrobium hy... [more]
A0A2N2ZT76_9BACT5.730e-871.88EamA/RhaT family transporter (Fragment) n=1 Tax=Ba... [more]
A0A5C6RQD5_9FLAO1.030e-665.63DMT family transporter n=1 Tax=Vicingus serpentipe... [more]
G8R443_OWEHD2.670e-671.88Putative permease, DMT superfamily n=1 Tax=Owenwee... [more]
A0A6N6M720_9FLAO2.690e-668.57DMT family transporter n=1 Tax=Salibacter halophil... [more]
A0A2A5H9Y0_9FLAO5.040e-665.63EamA family transporter n=2 Tax=unclassified Flavo... [more]
A0A7K3WRT3_9FLAO1.310e-565.63DMT family transporter n=1 Tax=Cryomorpha ignava T... [more]
A0A2N2YUS1_9BACT1.780e-562.50EamA/RhaT family transporter n=1 Tax=Bacteroidetes... [more]
A0A2D8WG05_9FLAO2.290e-562.50EamA family transporter (Fragment) n=1 Tax=Flavoba... [more]
A0A7V9MPB0_9BACT2.450e-562.86DMT family transporter n=1 Tax=Bacteroidetes bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100819contigL-digitata_M_contig100819:831..935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog926562.Oweho_2136
PFAMsEamA
Model size105
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.37e-07
EggNOG OGsCOG0697@1|root,COG0697@2|Bacteria,4NGZ3@976|Bacteroidetes,1HYCJ@117743|Flavobacteriia,2PBM7@246874|Cryomorphaceae
DescriptionEamA-like transporter family
Cds size105
COG categoryEG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.3938475-CDS-L-digitata_M_contig100819:830..9351682406611.3938475-CDS-L-digitata_M_contig100819:830..935Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100819 831..935 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100819.3.1prot_L-digitata_M_contig100819.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100819 831..935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100819.3.1

>prot_L-digitata_M_contig100819.3.1 ID=prot_L-digitata_M_contig100819.3.1|Name=mRNA_L-digitata_M_contig100819.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=35bp
MNKSTKIKAHLALVGVALIYGLNYSVAKDVMPNFV
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mRNA from alignment at L-digitata_M_contig100819:831..935+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100819.3.1 ID=mRNA_L-digitata_M_contig100819.3.1|Name=mRNA_L-digitata_M_contig100819.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=105bp|location=Sequence derived from alignment at L-digitata_M_contig100819:831..935+ (Laminaria digitata LdigPH10_18mv male)
ATGAATAAATCCACAAAAATTAAAGCGCACTTAGCCCTGGTAGGGGTGGC GCTTATATATGGCCTTAACTATTCGGTAGCCAAGGATGTGATGCCCAATT TTGTG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100819:831..935+

>mRNA_L-digitata_M_contig100819.3.1 ID=mRNA_L-digitata_M_contig100819.3.1|Name=mRNA_L-digitata_M_contig100819.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=105bp|location=Sequence derived from alignment at L-digitata_M_contig100819:831..935+ (Laminaria digitata LdigPH10_18mv male)
ATGAATAAATCCACAAAAATTAAAGCGCACTTAGCCCTGGTAGGGGTGGC
GCTTATATATGGCCTTAACTATTCGGTAGCCAAGGATGTGATGCCCAATT
TTGTG
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