mRNA_L-digitata_M_contig100819.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100819.1.1
Unique NamemRNA_L-digitata_M_contig100819.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100819.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100819contigL-digitata_M_contig100819:30..317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog760192.Halhy_3627
PFAMsHNH,HNH_2,RRXRR
Model size288
Max annot lvl2|Bacteria
KEGG koko:K07451
Hectar predicted targeting categorysignal anchor
Exons1
Evalue8.07e-06
EggNOG OGsCOG1403@1|root,COG1403@2|Bacteria,4PP1Q@976|Bacteroidetes
DescriptionTIGRFAM RHS repeat-associated core domain
Cds size270
COG categoryV
BRITEko00000,ko01000,ko02048
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.3135817-CDS-L-digitata_M_contig100819:29..2991682406611.3135817-CDS-L-digitata_M_contig100819:29..299Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100819 30..299 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.3244328-UTR-L-digitata_M_contig100819:299..3171682406611.3244328-UTR-L-digitata_M_contig100819:299..317Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100819 300..317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100819.1.1prot_L-digitata_M_contig100819.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100819 30..299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100819.1.1

>prot_L-digitata_M_contig100819.1.1 ID=prot_L-digitata_M_contig100819.1.1|Name=mRNA_L-digitata_M_contig100819.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=90bp
MGLANAIGSNGLFGLGRRDPSELGRLSNSARSGQITGDFLSLLIGSGEVL
LGGLVAFGGGFISISGFGAVLGLPAAAFGGGVALHGLSTL
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mRNA from alignment at L-digitata_M_contig100819:30..317-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100819.1.1 ID=mRNA_L-digitata_M_contig100819.1.1|Name=mRNA_L-digitata_M_contig100819.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=288bp|location=Sequence derived from alignment at L-digitata_M_contig100819:30..317- (Laminaria digitata LdigPH10_18mv male)
CATACCCTTGCTTTTGGGATGGGCCTGGCTAATGCTATTGGATCTAATGG
TCTTTTTGGACTTGGAAGAAGGGACCCTAGTGAACTAGGGCGTCTCTCTA
ATTCAGCAAGAAGTGGGCAGATTACAGGGGATTTTCTTTCTTTGCTAATC
GGTTCCGGGGAGGTGCTATTAGGAGGTTTGGTAGCTTTCGGAGGCGGATT
CATATCAATTTCTGGTTTTGGTGCGGTTCTAGGTCTCCCAGCAGCTGCCT
TTGGCGGTGGAGTTGCCCTTCACGGTTTGTCAACTTTG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100819:30..317-

>mRNA_L-digitata_M_contig100819.1.1 ID=mRNA_L-digitata_M_contig100819.1.1|Name=mRNA_L-digitata_M_contig100819.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=270bp|location=Sequence derived from alignment at L-digitata_M_contig100819:30..317- (Laminaria digitata LdigPH10_18mv male)
ATGGGCCTGGCTAATGCTATTGGATCTAATGGTCTTTTTGGACTTGGAAG
AAGGGACCCTAGTGAACTAGGGCGTCTCTCTAATTCAGCAAGAAGTGGGC
AGATTACAGGGGATTTTCTTTCTTTGCTAATCGGTTCCGGGGAGGTGCTA
TTAGGAGGTTTGGTAGCTTTCGGAGGCGGATTCATATCAATTTCTGGTTT
TGGTGCGGTTCTAGGTCTCCCAGCAGCTGCCTTTGGCGGTGGAGTTGCCC
TTCACGGTTTGTCAACTTTG
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