mRNA_L-digitata_M_contig10080.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10080.2.1
Unique NamemRNA_L-digitata_M_contig10080.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig10080.2.1 vs. uniprot
Match: D7FKI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI0_ECTSI)

HSP 1 Score: 676 bits (1744), Expect = 1.340e-237
Identity = 360/572 (62.94%), Postives = 423/572 (73.95%), Query Frame = 1 
Query:   31 LVCLAALSSGLQGDETEALVGKEFCAE-GACPISIGSTLSDTSTTNPELLQAGPADRDAQAR---RTRRVGFSHEDVSGDESLRPFLSTFRESLAKGDEDAVDPVHMHSRRSPIADTLIQADDDDLEVATHESRRSLAATQRADDPLVYPNGGTYLHPIAVSLVSTDGSIIYYTTDGTSPGESSSFVNSGELIVVGDSATLRTVAAYEDWSFNSLSSAEVETTFVVYSTGKCGHAYFVPHFTSSGYSGNVVEVDLHTDALGSVRLHGVVTDFADFYASGGVGPYDGQVVTNDLTADGDDDLAGYWGGFSGDVDGTALGFLSPFFNGNNFHGKAVQINLGNFGSANITRFCGSGVSV-DTNTTCLFTVLDLEEVDPDLLGFSGGFLDDSKAYFVPSHNSGGQGAKLVRVAASNFTGENVEVLDLQSVDPEVGGFFGGFAWEGHGFLVPSRSFQGPVGGVNTNLSADG-----SFVGGGFSHSQG-----KAGRTQPAYSGKLVRVNLSDFSSSGVEVLDLTMVDPDLRGFMGGFAVGHWGYLVPFKNREAEAEFSGKMVRFDLLAFDHASVTV 1701
            LVCLAA  S +  +    L     C E  A  +++       S  N EL + G   R A+ R   R R+VGFSHEDV+GDESL+PFL  F++SL+   +D    V           T+   + D++   T  SRR+LA T++A+DP  +P+GGTY  PIAVSLVS D +++YYTTDGT P  +S+FV S ELIV+ +S T+R +AA++   F++ SSAEVE +FVVY  GKCGHAYFVPHFTSSGYSGNVVEV+L TD LGSVRLHGVVTDFADFY+ GGVGPY GQV+++DLTA+GD  LAGYWGGFSGDVDG   GFLSP F+G +FHGKAVQI L  FG  N TRFCGS   V ++N TC + V+DLE+VDPDL GFSGGFL  SKAYFVPS+N  G GAK VRV ASNF+  +VEVLDL +VDPEVGGFFGGFAWEG+G+LVP RSFQGPVGGVNTNLSADG     SF+G   S S G     KAGR QPAYSGKLVRV+LSDFSSSGV+VLDLT VDPDLRGF GGFA GHWG+LVPFKN+EA+ EFSGKMVRFDL  FDHASVTV
Sbjct:   11 LVCLAAALSSVADEPGRELQAGNLCREESASCLALDDLSGIPSPDNDELPRTGSTGRWAERRSNKRKRQVGFSHEDVAGDESLQPFLQAFKDSLSGTRKDVASQVEQEDSVPATNPTVSSVEGDEV-TTTVISRRALAGTEQAEDPTFFPDGGTYHEPIAVSLVSDDSAVVYYTTDGTVPDGTSTFVTSSELIVLEESVTIRAIAAFQGEDFDARSSAEVEASFVVYVAGKCGHAYFVPHFTSSGYSGNVVEVELQTDRLGSVRLHGVVTDFADFYSDGGVGPYTGQVISSDLTAEGDSGLAGYWGGFSGDVDGEMFGFLSPLFDGEDFHGKAVQIRLDGFGGTNTTRFCGSSEGVLESNATCTYNVVDLEDVDPDLRGFSGGFLHASKAYFVPSYNGRGAGAKFVRVDASNFSSNSVEVLDLHTVDPEVGGFFGGFAWEGYGYLVPCRSFQGPVGGVNTNLSADGFAWSSSFLG---SDSTGRGSGQKAGRLQPAYSGKLVRVDLSDFSSSGVQVLDLTEVDPDLRGFTGGFAAGHWGFLVPFKNKEADGEFSGKMVRFDLRTFDHASVTV 578
[Close]
BLAST of mRNA_L-digitata_M_contig10080.2.1 vs. uniprot
Match: A0A6V1PSV2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PSV2_HETAK)

HSP 1 Score: 144 bits (364), Expect = 1.340e-34
Identity = 84/199 (42.21%), Postives = 110/199 (55.28%), Query Frame = 1 
Query: 1102 CLFTVLDLEEVDPDLLGFSGGFLDDSKAYFVPS---HNSGGQGAKLVRVAASNFTGENVEVLDLQSVDPEVGGFFGGFAWEGHGFLVPSRSFQGPVGGVNTNLSADG-SFVGGGFSHSQGKAGRTQPAYSGKLVRVNLSDFSSSGVEVLDLTMVDPDLRGFMGGFAVGHWGYLVPFKNREA-EAEFSGKMVRFDLLAFD 1683
            C   VLDL EV   L GF+GGF      Y VP+     S    A L RV A  F    VE L+L   D  VGG++GG  +   G+LVP R+  GP+GG+++  +ADG           +   G  +  YSG ++R+NL+ FS   VE LDL  + PDLRGF GGF VG +GYLVP+KN+E  E    G +V+ DL  F+
Sbjct:    9 CTIAVLDLTEVHAYLRGFAGGFAHGGFVYLVPAADGRESSTPVAHLARVRAGQFNASGVEWLELSEYDTHVGGYYGGLVYGDSGYLVPHRTNIGPIGGIHSRYTADGYKPAPAHLPRLEAGGGHLEAEYSGAVLRLNLTAFSVDAVEHLDLADLHPDLRGFAGGFVVGKYGYLVPYKNQERLEGGHHGNLVKLDLETFE 207
[Close]
BLAST of mRNA_L-digitata_M_contig10080.2.1 vs. uniprot
Match: R1DVF0_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DVF0_EMIHU)

HSP 1 Score: 128 bits (321), Expect = 6.530e-28
Identity = 113/348 (32.47%), Postives = 160/348 (45.98%), Query Frame = 1 
Query:  718 HAYFVPHFTSSGYSGNVVEVDLHTDALGSVRLHGVVTDFADFYASGGVGPYDGQVVTNDLTADGDDDLAGYWGGFSGDVDGTALGFLSPFFNGNNFHGKAVQINLGNFGSANITRFCGSGVSVDTNTTCLFTVLDLEEVDPDLLGFSGGFLDDSKAYFVPSHNSGGQGAKLVRVAASNFTGENVEVLDLQSVDPEVGGFFGGFAWEGHGFLVPSRSFQGPVGGVNTNLS-ADGSFVG-----------------GGFSHSQGK----AGRTQPAYSGKLVRVNLSDFSSSGVEVLDLTMVDPDLRGFMGGFAVGHWGYLVPFKNREAEAEFSGKMVRFDLLAFDHASV 1695
            HAY+VP++  + Y+G    V L                 +DF +SG         V     AD + +L G+ GGF+ D    A  +  P++N   + G AV+++L +F S        SGV            L+L + +P+L GF+GGF  D+ AY+VP  N GG+    VRV+ S+F+   VE L+L   +  + GF GGF  + H + VP   + G   G    +S +D S  G                 GGF+         +  + P + G   RV+LSDFSSSGVE L+L   D +L+GF GGFA     Y VPF N       SG  VR  L  F  + V
Sbjct:  194 HAYYVPYYNDA-YNGYAARVSL-----------------SDFSSSG---------VEYFNLADKNSNLKGFRGGFATD----AHAYYVPYYNVA-YSGYAVRVSLSDFSS--------SGVEY----------LNLADTNPNLKGFNGGFATDAHAYYVPFSNDGGRNGYAVRVSLSDFSSSGVEYLNLADTNSNLKGFAGGFVTDTHAYYVPQ--YNGAYSGYAVRVSLSDFSSSGVEYLNLADTNSNLKGFRGGFATDAHAYYVPSYNSAPNFHGYAARVSLSDFSSSGVEYLNLADTDSNLKGFDGGFATDAHAYYVPFNNGAK----SGYAVRVSLSDFSSSGV 485
[Close]
BLAST of mRNA_L-digitata_M_contig10080.2.1 vs. uniprot
Match: A0A7S4E8S4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8S4_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.300e-27
Identity = 88/234 (37.61%), Postives = 114/234 (48.72%), Query Frame = 1 
Query: 1117 LDLEEVDPDLLGFSGGFLDDSKAYFVPSHNSGGQGAKLVRVAASNFTGENVEVLDLQSVDPEVGGFFGGFAWEGHG------FLVPSRSFQGPVGGVNTNLSADGSFVG---------------------------GGFSHSQGKAGRTQPA----------YSGKLVRVNLSDFSSSG---VEVLDLTMVDPDLRGFMGGFAVGHWGYLVPFKNREAEAEFSGKMVRFDLLAF 1680
            LDL      L GF GGF      YFVP  +    G  + R+ A +F+   V+ LDL   D  + G+FGGF +  HG      FLVP  +  GPVG VN+   AD    G                           GG  HS+ +   +Q            + GKLVR++L+DF S+G    +VLDLT +DPDLRGF GG  VG +G LVP+KNR  +  F GK+V+ DL AF
Sbjct:  631 LDLTATHDRLRGFVGGFAMRDHVYFVPHFDGRNPGHVIARLEAEDFSQATVKALDLWRWDTSLAGYFGGFGYTTHGAGIEYGFLVPHAALTGPVGKVNSQHPADTWAPGVGQDWNLDYSDGRDTSTRLGERHWYEEGGSFHSEYRTEGSQRTAVGGDHTTEYFHGKLVRLHLADFESTGDAPFDVLDLTEIDPDLRGFAGGSVVGRYGLLVPYKNRVGDDGFFGKLVKVDLEAF 864
[Close]
BLAST of mRNA_L-digitata_M_contig10080.2.1 vs. uniprot
Match: R1E373_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E373_EMIHU)

HSP 1 Score: 119 bits (298), Expect = 1.920e-24
Identity = 99/327 (30.28%), Postives = 141/327 (43.12%), Query Frame = 1 
Query:  718 HAYFVPHFTSSGYSGNVVEVDLHTDALGSVRLH--------------GVVTDFADFYA----SGGVGPYDGQVVTNDLT---------ADGDDDLAGYWGGFSGDVDGTALGFLSPFFNGNNFHGKAVQINLGNFGSANITRFCGSGVSVDTNTTCLFTVLDLEEVDPDLLGFSGGFLDDSKAYFVPSHNSGGQGAKLVRVAASNFTGENVEVLDLQSVDPEVGGFFGGFAWEGHGFLVPSRSFQGPVGGVNTNLSADGSFVGGGFSHSQGKAGRTQPAYSGKLVRVNLSDFSSSGVEVLDLTMVDPDLRGFMGGFAVGHWGYLVPF 1617
            HAY+VP F +  YSG    V+L   +   V                 G  TD   +Y      GG   Y  +V  +D +         AD + +L G+ GG+  D       +  P+ NG  + G A +++L +F S        SGV            L+L + +P+L GF GGF  D+ AY++P+ N GG+     RV+ S+F+   VE L+L   +  + GF GGFA + H + VP ++                     G  H             G   RVNLSDFSSSGVE L+L   + +LRGF  GFA     Y  P+
Sbjct:   78 HAYYVP-FYNGAYSGYAARVNLSDFSSSGVEYFNLADTNPNLKGFFGGFATDAHAYYVPTLNDGGRSGYAARVSLSDFSSSGVEYLNLADTNSNLKGFQGGYVTDTHA----YYVPYSNGAAYSGYAARVSLSDFSS--------SGVEY----------LNLADTNPNLKGFFGGFATDAHAYYLPNKNDGGRNGYAARVSLSDFSNSGVEYLNLADTNSNLKGFNGGFATDAHAYFVPDKN---------------------GSPH-------------GYAARVNLSDFSSSGVEYLNLADTNSNLRGFGRGFATDAHAYYAPW 347
[Close]
BLAST of mRNA_L-digitata_M_contig10080.2.1 vs. uniprot
Match: A0A7S2DPP0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DPP0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 7.550e-24
Identity = 62/149 (41.61%), Postives = 87/149 (58.39%), Query Frame = 1 
Query: 1159 GGFLDDSKAYFVPSHNSGGQGAKLVRVAASNFTGENVEVLDLQSVDPEVGGFFGGFAW---------EGHGFLVPSRSFQGPVGGVNTNLSADGSFVGGGFSHSQGKAG--RTQPAYSGKLVRVNLSDFSSSGVEVLDLTMVDPDLRGF 1572
            GGF+     Y VP  +    G K+ RV   +F  ++V VLDL  V  ++ GFFGGFA+         + +G+LVP RS +GP+ GVNT+ + DG F     +  +   G       Y G+LVR++L DF++SGV VLDL++ DPDLRGF
Sbjct:    1 GGFVYGDYLYLVPFFDGHQYGHKVARVHMEHFDADHVHVLDLWEVSTDLAGFFGGFAYTTQSAGGDSKPYGYLVPHRSMEGPIDGVNTDFTVDG-FTSEYVNRRRSSMGGDHLTAHYHGRLVRIDLDDFTASGVSVLDLSVYDPDLRGF 148
[Close]
BLAST of mRNA_L-digitata_M_contig10080.2.1 vs. uniprot
Match: R1DEC1_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DEC1_EMIHU)

HSP 1 Score: 112 bits (281), Expect = 8.480e-24
Identity = 86/265 (32.45%), Postives = 119/265 (44.91%), Query Frame = 1 
Query:  901 ADGDDDLAGYWGGFSGDVDGTALGFLSPFFNGNNFHGKAVQINLGNFGSANITRFCGSGVSVDTNTTCLFTVLDLEEVDPDLLGFSGGFLDDSKAYFVPSHNSGGQGAKLVRVAASNFTGENVEVLDLQSVDPEVGGFFGGFAWEGHGFLVPSRSFQGPVGGVNTNLSADGSFVGGGFSHSQGKAGRTQPAYSGKLVRVNLSDFSSSGVEVLDLTMVDPDLRGFMGGFAVGHWGYLVPFKNREAEAEFSGKMVRFDLLAFDHASV 1695
            AD + +L G+WGGF  D    A  +  P  NG    G A +++L +F S        SGV            L+L +   +L GF GGF  D+ AY+VP +N GG+     RV+ S+F+   VE L+L   +  + GF  GF  + H + VP                           H  G       A +G + RV+LSDFSSSGVE  +L   + +L+GF+GGFA     Y VP+ N        G  VR  L  F  + V
Sbjct:   26 ADTNSNLKGFWGGFVTD----AHAYYVPHNNGGR-SGYAARVSLSDFSS--------SGVEY----------LNLADTSSNLKGFIGGFATDAHAYYVPHYNDGGRSGYAARVSLSDFSSSGVEYLNLADTNSNLKGFIEGFVTDAHAYYVP---------------------------HHNG-------ALNGYVARVSLSDFSSSGVEYFNLAETNSNLKGFIGGFATDAHAYYVPYNNGSPH----GYAVRVSLSDFSSSGV 229
[Close]
BLAST of mRNA_L-digitata_M_contig10080.2.1 vs. uniprot
Match: A0A6H5KG48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG48_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 5.830e-23
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 1 
Query: 1525 VEVLDLTMVDPDLRGFMGGFAVGHWGYLVPFKNREAEAEFSGKMVRFDLLAFDHASVTV 1701
            V+VLDLT VDPDLRGF GGFA GHWG+LVPFKN+EA+ EFSGKMVRFDL  FDHA VTV
Sbjct:   11 VKVLDLTEVDPDLRGFTGGFAAGHWGFLVPFKNKEADGEFSGKMVRFDLRTFDHAGVTV 69
[Close]
BLAST of mRNA_L-digitata_M_contig10080.2.1 vs. uniprot
Match: A0A662XTA7_9STRA (FH2 domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XTA7_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.570e-21
Identity = 87/252 (34.52%), Postives = 116/252 (46.03%), Query Frame = 1 
Query:  973 FLSPFFNGNNFHGKAVQINLGNFGSANITRFCGSGVSVDTNTTCLFTVLDLEEVDPDLLGFSGGFLDDSKAYFVPSHNSGGQGAKLVRVAASNFTGENVEVLDLQSVDPEVGGFFGGFAWEGHGFLVPSRSFQGPVGG--VNTNL-----SADGSFVGGGFSHSQGKAGRTQPAYSGKLVRVNLSDFSSSGVEVLDLTMVDPDLRGFMGGFAVGHWGYLVPFKN---REAEAEFSGKMVRFDLLAFDHASVT 1698
            +L PFFNG ++    +++    F S                 + +   L L  V  +L GF   F DDS  Y VP  N  G    LVR    NF  E+VEVLDL +V+P   GF   F +    FLVP   F+ P+ G  +  NL     S  G  V       +  A +    YSG + RV+L DF+S  V  LDLT +  +LRGFM GFA   +  LVP ++   R      SGK+VR D   F  + V+
Sbjct:  870 YLVPFFNGVSYASSVIRVLASTFSSM----------------SPIVETLSLASVSANLKGFGASFTDDSYGYLVPRENENGLFGTLVRFPLENFVPESVEVLDLAAVNPRFVGFSSAFTYGNFAFLVP---FRRPLEGDELTQNLREFPVSNSGLVV----RRVKESASQELNPYSGLIARVDLRDFTS--VSFLDLTAIHSELRGFMRGFAYRQYVILVPHRSEFYRVNGQSQSGKVVRIDTTGFSASGVS 1096
[Close]
BLAST of mRNA_L-digitata_M_contig10080.2.1 vs. uniprot
Match: R1FZX9_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FZX9_EMIHU)

HSP 1 Score: 100 bits (249), Expect = 1.680e-20
Identity = 77/224 (34.38%), Postives = 104/224 (46.43%), Query Frame = 1 
Query: 1003 FHGKAVQINLGNFGSANITRFCGSGVSVDTNTTCLFTVLDLEEVDPDLLGFSGGFLDDSKAYFVPSHNSGGQ-GAKLVRVAASNFTGENVEVLDLQSVDPEVGGFFGGFAWEGHGFLVPSRSFQGPVGGVNTNLSADGSFVGGGFSHSQGKAGRTQPAYSGKLVRVNLSDFSSSGVEVLDLTMVDPDLRGFMGGFAVGHWGYLVPFKNREAEAEFSGKMVRFDL 1671
            + G AV+++L +F S        SGV            L+L + + +L GF GGF  D+ AY+VPS+NS         RV+ S+F+   VE L+L   D  + GF GGFA + H + VP                         F++          A SG  VRV+LSDFSSSGVE L+L   + +L+GF GGFA     Y VP  N      +SG   R  L
Sbjct:   48 YSGYAVRVSLSDFSS--------SGVEY----------LNLADTNSNLKGFRGGFATDAHAYYVPSYNSAPNFHGYAARVSLSDFSSSGVEYLNLADTDSNLKGFDGGFATDAHAYYVP-------------------------FNNG---------AKSGYAVRVSLSDFSSSGVEYLNLADTNSNLKGFGGGFATAAHAYYVPHHN----GAYSGYAARVSL 215
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10080.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKI0_ECTSI1.340e-23762.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1PSV2_HETAK1.340e-3442.21Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
R1DVF0_EMIHU6.530e-2832.47Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S4E8S4_9STRA1.300e-2737.61Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
R1E373_EMIHU1.920e-2430.28Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S2DPP0_9STRA7.550e-2441.61Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
R1DEC1_EMIHU8.480e-2432.45Uncharacterized protein (Fragment) n=1 Tax=Emilian... [more]
A0A6H5KG48_9PHAE5.830e-2381.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A662XTA7_9STRA1.570e-2134.52FH2 domain-containing protein (Fragment) n=1 Tax=N... [more]
R1FZX9_EMIHU1.680e-2034.38Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10080contigL-digitata_M_contig10080:1689..7612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FKI0
PFAMsDNA_gyraseA_C,PAN_1
Model size1701
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons9
Evalue2.2e-238
EggNOG OGs28HYU@1|root,2QQ9N@2759|Eukaryota
Cds size1701
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10080.2.1prot_L-digitata_M_contig10080.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10080 1689..7612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406611.149413-CDS-L-digitata_M_contig10080:1688..20871682406611.149413-CDS-L-digitata_M_contig10080:1688..2087Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10080 1689..2087 +
1682406611.1595018-CDS-L-digitata_M_contig10080:2436..27431682406611.1595018-CDS-L-digitata_M_contig10080:2436..2743Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10080 2437..2743 +
1682406611.1700952-CDS-L-digitata_M_contig10080:3073..32461682406611.1700952-CDS-L-digitata_M_contig10080:3073..3246Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10080 3074..3246 +
1682406611.1771991-CDS-L-digitata_M_contig10080:3688..38321682406611.1771991-CDS-L-digitata_M_contig10080:3688..3832Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10080 3689..3832 +
1682406611.188504-CDS-L-digitata_M_contig10080:4230..43381682406611.188504-CDS-L-digitata_M_contig10080:4230..4338Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10080 4231..4338 +
1682406611.1965425-CDS-L-digitata_M_contig10080:4997..51381682406611.1965425-CDS-L-digitata_M_contig10080:4997..5138Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10080 4998..5138 +
1682406611.2045553-CDS-L-digitata_M_contig10080:5699..57981682406611.2045553-CDS-L-digitata_M_contig10080:5699..5798Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10080 5700..5798 +
1682406611.2128613-CDS-L-digitata_M_contig10080:6539..66981682406611.2128613-CDS-L-digitata_M_contig10080:6539..6698Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10080 6540..6698 +
1682406611.2213614-CDS-L-digitata_M_contig10080:7441..76121682406611.2213614-CDS-L-digitata_M_contig10080:7441..7612Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10080 7442..7612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10080.2.1

>prot_L-digitata_M_contig10080.2.1 ID=prot_L-digitata_M_contig10080.2.1|Name=mRNA_L-digitata_M_contig10080.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=567bp
MPATCQLATVLVCLAALSSGLQGDETEALVGKEFCAEGACPISIGSTLSD
TSTTNPELLQAGPADRDAQARRTRRVGFSHEDVSGDESLRPFLSTFRESL
AKGDEDAVDPVHMHSRRSPIADTLIQADDDDLEVATHESRRSLAATQRAD
DPLVYPNGGTYLHPIAVSLVSTDGSIIYYTTDGTSPGESSSFVNSGELIV
VGDSATLRTVAAYEDWSFNSLSSAEVETTFVVYSTGKCGHAYFVPHFTSS
GYSGNVVEVDLHTDALGSVRLHGVVTDFADFYASGGVGPYDGQVVTNDLT
ADGDDDLAGYWGGFSGDVDGTALGFLSPFFNGNNFHGKAVQINLGNFGSA
NITRFCGSGVSVDTNTTCLFTVLDLEEVDPDLLGFSGGFLDDSKAYFVPS
HNSGGQGAKLVRVAASNFTGENVEVLDLQSVDPEVGGFFGGFAWEGHGFL
VPSRSFQGPVGGVNTNLSADGSFVGGGFSHSQGKAGRTQPAYSGKLVRVN
LSDFSSSGVEVLDLTMVDPDLRGFMGGFAVGHWGYLVPFKNREAEAEFSG
KMVRFDLLAFDHASVTV
back to top

mRNA from alignment at L-digitata_M_contig10080:1689..7612+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10080.2.1 ID=mRNA_L-digitata_M_contig10080.2.1|Name=mRNA_L-digitata_M_contig10080.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=5924bp|location=Sequence derived from alignment at L-digitata_M_contig10080:1689..7612+ (Laminaria digitata LdigPH10_18mv male)
ATGCCTGCCACCTGTCAACTAGCCACAGTGCTGGTCTGTCTAGCTGCGCT
GTCTAGTGGATTGCAAGGGGACGAGACAGAGGCTCTCGTCGGGAAGGAGT
TCTGTGCTGAAGGCGCTTGCCCCATATCTATAGGTAGCACGTTGTCGGAT
ACCTCCACGACGAACCCCGAATTACTACAGGCGGGTCCTGCTGATCGAGA
TGCACAAGCTAGACGTACGAGACGAGTTGGCTTCTCGCATGAAGACGTCT
CCGGCGACGAGTCTCTTCGACCCTTTTTGTCGACGTTTAGGGAATCGCTG
GCAAAAGGAGATGAGGATGCGGTGGACCCAGTGCACATGCATTCTCGACG
GTCGCCTATCGCGGATACTTTGATACAAGCAGACGATGATGATCTCGAGG
TGACGAAAACATGTGGTCAGCCTCGTTGATAGAACAAGATAGTGCGTGCG
AGTGGGATGTCTCGCTGCAGCCTTTGGATCACTCTGCATCGACAGCCTCT
AACAGGGAGCATCACTCGTATATACGAAGAGTGCAGCTATTTTTGGAGCA
CAATAAACATACACTGCTGCTACAAGCTACCGTATAGTTCTACATGTAGC
GCTCTACGTACGTATTTTTGTCGAGCAGAGCTTTGGTTTACTGTACTAAG
TTATCTACCAAAAAGACGTGTCTGTAACTTGTAAAGAGTCGAAGTCGAAA
CCAATTTCGACTTGTGGATAATGTACCTTATCGCCCTCTCCTCTTCAGGT
CGCCACCCATGAGTCGAGGCGATCTCTCGCAGCCACGCAACGAGCCGACG
ATCCACTCGTTTACCCCAACGGCGGCACATACCTTCATCCGATCGCCGTG
TCCTTGGTGTCCACGGACGGTTCCATTATCTACTACACCACCGACGGGAC
ATCGCCCGGCGAGAGCTCAAGCTTCGTCAATTCGGGCGAGCTCATCGTTG
TTGGAGACTCTGCCACGCTTCGAACAGTAGCGGCGTACGAAGACTGGTCT
TTCAACTCGCTCTCGTCGGCGGAAGTAGAGACCACCTTCGTGGTGTACTC
CACAGGTACGGAATGGAACATTTCTGCGATACGGTACACTGTATAGCTGT
ACTTAGCCTTGTAGTACACGCCGACTAGCTGAGTTCGGAGCCGCATTCAC
ATGCTGTCTTGTTCAACTGGCTTATCGGTTCGGTCGGGTGATTATCAACG
CGTGCGAAGTGTCTCGTTAATGTTTAGACGTGCACTTCGTATTTGGTGAA
TCGTGTATCTGGTGAATTGTAGTCGTGTGGGAGTCCATTGCCTTTCAGGT
AAGGGCAGAAACCGCCCGTCCCCCCAGCGTTGTGTCCGTCCTAATATCTC
CGCCCGAGCGCTGGCTCAAATCACCGATACGACAGGCAAGTGTGGCCACG
CCTACTTTGTGCCGCACTTCACAAGCTCCGGCTACTCCGGGAACGTTGTG
GAGGTTGACCTCCACACAGATGCGCTAGGGAGCGTCCGGCTTCACGGAGT
GGTAACCGACTTCGCTGACTTCTACGCTTCCGGAGGCGTGGGACCTTACG
ATGGACAGGTACCACGTGTTCAATTGTGTTCAAGTAGCGTCCGCAGTGAA
GGTGCGGGGTTGCGCCCTTGTCGCGACCGTTTTCTCTTCCGTAAGCTGTT
CTTTGTCGATGTTCGTTTCCGATTGACTGCACACGCCGTAAACTATATCG
GCGAGGCATATTCGTAGGCAGTGTACAAGCCGTGGCCCTTCCCGCGCTAT
TAGGCTGCGTCGTATTTGGAGGTGCTCGGGATAATTCGCATGTTACCTAC
CTCAGAGTCCGCTTTCCTGCTACTGCACCTCTCACTGTTTTCTTCCGCGG
GTTGCTGCTGCCCTTCCTCTCTCTCGACTATGCAAGAATCAAGGACGACA
AGTTACAGACGGCGATCTCCCGACAGTGGGTTTTCCTGGCGCTCATACGT
TATCATCGGACGCATTCTTGTATGTATCTGTATTTTTTTTGGACTCAAAG
GTGGTGACCAACGATCTCACAGCTGATGGGGACGACGACCTGGCTGGCTA
CTGGGGAGGGTTTAGTGGAGACGTGGACGGGACCGCCTTGGGATTTCTCA
GCCCCTTCTTCAATGGAAACAATTTCCATGGCAAGGCCGTGCAGGTTGGG
CGCGGCTCCGAAAGTGTGCCAAACCATGCCGCATGCTTTACGGGAGCTTC
GACAACGCATACTGTATATGCTTGTGTCGCGCGTGTTCATATTAATAGTG
TTACAACACAGGAATAAGGCGCGCTTGGGTCGCATACGCGTGGTTTTACG
CCACAGTACGGAAAATAGTGTTAACGTGGAACCTCGTGAGGGAAGGAAGT
TTATTTTGGCGACTGCCTAGGTACAGGCGGCGTAACAAAGGAAGTCTACG
GCGAGCTCCTTGGCGTCGTCGTTTGAGGCCTGTCGCTTTTTCCCACGGGA
AACAGATAAAACTTCATCATCCGTAACGACACACACGTCTGTCGTCCTCC
TCGCCCAATTAACCGCCCCTCCTCGCGAAACCGTGCGATCAGATCAACCT
CGGCAACTTCGGCAGCGCAAACATCACGCGCTTTTGCGGGTCTGGGGTGT
CTGTGGATACCAACACGACGTGCCTGTTTACCGTTCTCGACTTGGAGGAG
GTGAGCGCGTGCTGCGGCGCCCCGATCCGTTTCCTTGACCCTGATAGTGC
ATTGCCACATTTGTCAACCCCTTTGGGGCTCGAGAGGGAAAATGTGACGA
CTAAAAATGACGATTACAACATCGGCCACTCCTTGGTTGGAGGATGATAA
AAGTTTGATTTCTCCCAACTACAATGCAAGAAGTCGTTCGAATCGGGCGC
AGCATTGACCCTACCCTACTCGTAATGCTACGCGCCCGCACTACTCGTAG
ACGGTTAGTAATGGTTAACTTCTCAATTGTTTTGGTAAATCTCTCTGGAT
ATCCAAAGGGTTCACCCAGTGGCGAGCCTGCAGTACGGAGCATCCAAGGG
CTACTGTAGTGATTAACCCTGATGTGTCTGTCTAGGTCAGCGCGTCAATG
CCCTCGTGTTGGTACATTTCGATAGCGTGCGTATTGTTCGACCGTTATTC
TTGGGGGAACTTTTTCACGTTTGGAGCCGCTTGAAAAGGCTATCTTAATC
AGGTTGGCAAAGTGGCGCACGCTCTGGATCCGTAGAATAACCTCACTTTA
AATGGCAAGCCGGAACCAGAACAAAAGAGAACACACATATGGCGAAACGT
GTAATTACCGGGGTGCCTAACCGACAGAAGCGGGCAATGCCGTCCCGCTG
CTCGATCAGGTGGACCCGGATCTGCTGGGATTCAGCGGGGGGTTCCTGGA
TGATTCGAAGGCGTACTTTGTTCCGTCTCACAACAGCGGGGGACAAGGGG
CGAAGCTTGTCCGGGTCGCCGCCAGTAACTTCACCGGCGAAAATGTCGAG
GTGACAAACCGTGAAGACTCCTGTATATTGCATGCTGCCTTCAGCGAGGA
GTGGTGCACCTTTTGGTGCACATTTGATCTCCAACTGCACATTTTGGTAT
CCGTCGTTGCTGGGCTACCAGCCATGCACACACTTGCGCTCACACTTTCT
CTTCAAATTGTTGTGGTATCCGTCATTGCTTGGCTATCGGCCATGCACAA
ACTTGCCCCGGGCGCGACGGTTGTTGTTTACACGTGTCTGGGCTCACGTA
ATTAGTTTATTGCGCTACAGTGGTAGTGGCGGGAAAGGGCGTTGCCGAAC
TCGTCCACTTGCCGACTGGCATAGCGGCGTGCGGCGAACTGCTAGCTAGC
CTTCAGTCGCCAACCTGGCCCGAGTTATTATTGTTTGGCGCTTTGCTAAA
TGCAACCATTGTCGATTCATGTGTTCCCGTGCGACTGCTTTGAGGGCCGC
ATTGCACCTGCCTCCACCGACCAGATCGTTCCGAAACGATTACGTTTTCC
CAAAATTACTATAATACCTAAGGTGCCTCTGCTTTGCTGCTGGCTCGTAA
CCTGACGGCAGGTTCTCGATCTCCAATCAGTAGACCCAGAGGTTGGAGGC
TTCTTCGGAGGCTTCGCTTGGGAAGGGCACGGGTTCCTCGTACCGTCCAG
GTCGTTTCAGGTGTGAGCGCGGTCGAAACGGAATCGAGTGGCTTATTTAC
TGACTCTTAAGATTGCAGAGGAACATAGTAAATAAGACCAAATCGAGTAA
TAAACAGAGGAGAAACCTAGATTTTTGGCGTCCACGGCGGGTTCTGATTA
CTGATAAGGTTTAAGGTCCCCTCGTAGTAGAAGCGAAACCGGAACACAGC
GGCAGGTGTACCGGCAGAGCGCGCGGACTTTTCTCCGCGTTTCTCGGCAA
AACGTGATTTTTCTAGCAGCCTGGTTTGGTCCTTTATCAATTTCATTGTA
AAAGAAATACGGGTGAGTACCGATGGAAAATATGTCACGGAGCGCTGGTA
ATATGCTGAAACCCTGGCGCTGGCGCAGGTTCCGAAAGCGACAGCCCAAA
CGCATGGGTAGCCGTGGCTATTTATTTTAGGGACAAAGCCGGCCTGCTCC
TGAGTGATCGTCGCGCTACAGGCGTGTCAACTGCTACAGGCCAACGGCCA
CGGCATGACAAGGGAACACTGCAAATAGCATTCCTTCAGGCATTAGCGCC
ATAAGGAGCAGGGACTAGCCGGTCGCGTGCTGTTAGTTGTCTGCGGCACC
ACCGGCAAAAAGAAAACAAGTCCTCATTCGTTACGCACTCTTACCATACA
ATCTTATCGCCCACGCCCATTTTTTTTGTCGTCCGTCGATTGCCATTACC
ACCCACGCCACAACCATCGCCTCTCCTTTCTCGTCCACCCCCAATGTACA
GGGTCCGGTGGGGGGCGTGAACACCAACTTGAGTGCCGACGGATCGTTTG
TAGGGGGCGGTTTCAGCCACTCCCAAGGAAAAGCGGGAAGAACGCAGCCG
GCCTACTCGGGAAAGTTGGTTCGAGTGAACCTCTCCGACTTTTCGTCTTC
GGGAGTTGAGGTGGGTACCGTATAGATGCGACGCCACGCTACGGCAGGGG
GTGCACCTCTGACTGATGTTGTCTTAGGTTCCCCATTTGAATGAGCTTCA
TACCCCACCCCAAAAAACAGGTTTCCGAGGAAGTGATAAAAAAAAGTGCA
ACCCATGGCCTAGGTGTAGATTACAACGAATACTATTGTAAAACATATTC
CAACGAATTTGGGTAGTTCCTCTGTTAAGGGGCTCGCCAGTCGGGAAAGA
AACCGTCCAGGAGGCGTTACTGTACCTCTATCGTAGCACGGGTCTTGCTG
TAAATACTGTGTACTGACGCGATTTACAGGGAAGCAGGAGCACCCACTCG
GGTCTACGTACGCGCATCAGGAAATGTGCTGGAGAGTGCGGTAGAGAGCG
ATAGCTTGTGGTGCTTGAATGGATGACAATACGGCCCGGCTCCACTGCGA
GGGTGTCTCAAGATTTTTTATCGAGAGAATCGGTCAGGATGTGTCTCAAG
GTTGACAAGAGAATCAGTCAGGATTGTCTCAAGGGCAACAAGAGAAAACC
GGCCAGGGTGAGAGTTTTTTGTTATTTTATACCTTTCTGGGGTATTGACG
GACCCGTTAACTCATCGTGGACAGCGGTAGTAGACTAAGCAACCCCGACA
AGCATCATGTTTCACCGTGCAATGTCTTAACTTGTGCTTTGATGTTTCGA
AACATGGGAACAACGAAAAAATGAAACCGTACATAACGCTACCTCGAGGA
CAGGTGCTGGATCTAACCATGGTCGATCCCGACCTCCGAGGTTTCATGGG
GGGGTTCGCCGTGGGACACTGGGGCTACCTGGTTCCGTTTAAGAACAGGG
AAGCGGAAGCAGAGTTTTCGGGCAAGATGGTTCGGTTCGACCTTCTGGCG
TTTGACCACGCTAGCGTTACGGTG
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig10080:1689..7612+

>mRNA_L-digitata_M_contig10080.2.1 ID=mRNA_L-digitata_M_contig10080.2.1|Name=mRNA_L-digitata_M_contig10080.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=1701bp|location=Sequence derived from alignment at L-digitata_M_contig10080:1689..7612+ (Laminaria digitata LdigPH10_18mv male)
ATGCCTGCCACCTGTCAACTAGCCACAGTGCTGGTCTGTCTAGCTGCGCT
GTCTAGTGGATTGCAAGGGGACGAGACAGAGGCTCTCGTCGGGAAGGAGT
TCTGTGCTGAAGGCGCTTGCCCCATATCTATAGGTAGCACGTTGTCGGAT
ACCTCCACGACGAACCCCGAATTACTACAGGCGGGTCCTGCTGATCGAGA
TGCACAAGCTAGACGTACGAGACGAGTTGGCTTCTCGCATGAAGACGTCT
CCGGCGACGAGTCTCTTCGACCCTTTTTGTCGACGTTTAGGGAATCGCTG
GCAAAAGGAGATGAGGATGCGGTGGACCCAGTGCACATGCATTCTCGACG
GTCGCCTATCGCGGATACTTTGATACAAGCAGACGATGATGATCTCGAGG
TCGCCACCCATGAGTCGAGGCGATCTCTCGCAGCCACGCAACGAGCCGAC
GATCCACTCGTTTACCCCAACGGCGGCACATACCTTCATCCGATCGCCGT
GTCCTTGGTGTCCACGGACGGTTCCATTATCTACTACACCACCGACGGGA
CATCGCCCGGCGAGAGCTCAAGCTTCGTCAATTCGGGCGAGCTCATCGTT
GTTGGAGACTCTGCCACGCTTCGAACAGTAGCGGCGTACGAAGACTGGTC
TTTCAACTCGCTCTCGTCGGCGGAAGTAGAGACCACCTTCGTGGTGTACT
CCACAGGCAAGTGTGGCCACGCCTACTTTGTGCCGCACTTCACAAGCTCC
GGCTACTCCGGGAACGTTGTGGAGGTTGACCTCCACACAGATGCGCTAGG
GAGCGTCCGGCTTCACGGAGTGGTAACCGACTTCGCTGACTTCTACGCTT
CCGGAGGCGTGGGACCTTACGATGGACAGGTGGTGACCAACGATCTCACA
GCTGATGGGGACGACGACCTGGCTGGCTACTGGGGAGGGTTTAGTGGAGA
CGTGGACGGGACCGCCTTGGGATTTCTCAGCCCCTTCTTCAATGGAAACA
ATTTCCATGGCAAGGCCGTGCAGATCAACCTCGGCAACTTCGGCAGCGCA
AACATCACGCGCTTTTGCGGGTCTGGGGTGTCTGTGGATACCAACACGAC
GTGCCTGTTTACCGTTCTCGACTTGGAGGAGGTGGACCCGGATCTGCTGG
GATTCAGCGGGGGGTTCCTGGATGATTCGAAGGCGTACTTTGTTCCGTCT
CACAACAGCGGGGGACAAGGGGCGAAGCTTGTCCGGGTCGCCGCCAGTAA
CTTCACCGGCGAAAATGTCGAGGTTCTCGATCTCCAATCAGTAGACCCAG
AGGTTGGAGGCTTCTTCGGAGGCTTCGCTTGGGAAGGGCACGGGTTCCTC
GTACCGTCCAGGTCGTTTCAGGGTCCGGTGGGGGGCGTGAACACCAACTT
GAGTGCCGACGGATCGTTTGTAGGGGGCGGTTTCAGCCACTCCCAAGGAA
AAGCGGGAAGAACGCAGCCGGCCTACTCGGGAAAGTTGGTTCGAGTGAAC
CTCTCCGACTTTTCGTCTTCGGGAGTTGAGGTGCTGGATCTAACCATGGT
CGATCCCGACCTCCGAGGTTTCATGGGGGGGTTCGCCGTGGGACACTGGG
GCTACCTGGTTCCGTTTAAGAACAGGGAAGCGGAAGCAGAGTTTTCGGGC
AAGATGGTTCGGTTCGACCTTCTGGCGTTTGACCACGCTAGCGTTACGGT
G
back to top