mRNA_L-digitata_M_contig100720.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100720.2.1
Unique NamemRNA_L-digitata_M_contig100720.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: A0A222E7S8_9RHOB (Putative amino-acid ABC transporter-binding protein YhdW n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E7S8_9RHOB)

HSP 1 Score: 566 bits (1458), Expect = 9.190e-196
Identity = 307/312 (98.40%), Postives = 310/312 (99.36%), Query Frame = 1
Query:    1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFEELAPTGDDDWDGAADRALSDALLTADLGARVSALRDVISRFAGTEAAEKARTAATRLETDLAQKDRTAQAIARLDRAKSAKDTAALRALLQEFDGTALGFQVQLALFEVEAAQRATEAQANAALTAALLLTDPAAQISALQRITRDHADQPAAQQAALA 936
            FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAP+GDSFNGGHKIALINQAFNLGFEELAPTGDDD DGAADRALSDALLTA+LGARVSALR VISRFAGTEAAEKA+TAATRLETDLAQKDRTAQAIARLDRAKSAKDTAALRALLQEFDGTALGFQVQLALFEVEAAQRATEAQANAALTAALLLTDPAAQISALQRITRDHADQPAAQQAALA
Sbjct:  145 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPTGDSFNGGHKIALINQAFNLGFEELAPTGDDDRDGAADRALSDALLTAELGARVSALRGVISRFAGTEAAEKAQTAATRLETDLAQKDRTAQAIARLDRAKSAKDTAALRALLQEFDGTALGFQVQLALFEVEAAQRATEAQANAALTAALLLTDPAAQISALQRITRDHADQPAAQQAALA 456          
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: A0A239EVH0_9RHOB (ABC-type amino acid transport substrate-binding protein n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239EVH0_9RHOB)

HSP 1 Score: 507 bits (1306), Expect = 6.710e-173
Identity = 275/312 (88.14%), Postives = 293/312 (93.91%), Query Frame = 1
Query:    1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFEELAPTGDDDWDGAADRALSDALLTADLGARVSALRDVISRFAGTEAAEKARTAATRLETDLAQKDRTAQAIARLDRAKSAKDTAALRALLQEFDGTALGFQVQLALFEVEAAQRATEAQANAALTAALLLTDPAAQISALQRITRDHADQPAAQQAALA 936
            FNYTSSDDTGAV TYLV+PREVA+DKDLDALLLQILG DANT+L GHIPM+MMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGL P+GDSFNGGHKIALINQAFNLGF+ELAPTG D+ DG ADRALSDALLTA+L ARV+ALR VISRFAGTEAAEKA+TAATRLETDLAQKDR A AIARLDRAKSAKDT  LRA+LQEFDGTALGFQVQLALFEVEAAQR TE+QANAALTAALLLTDP A+++AL+RITR+HA  PAA+QA  A
Sbjct:  142 FNYTSSDDTGAVLTYLVAPREVALDKDLDALLLQILGADANTDLGGHIPMKMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLKPTGDSFNGGHKIALINQAFNLGFQELAPTGGDNRDGDADRALSDALLTAELTARVTALRGVISRFAGTEAAEKAQTAATRLETDLAQKDRNALAIARLDRAKSAKDTDTLRAMLQEFDGTALGFQVQLALFEVEAAQRVTESQANAALTAALLLTDPNAKMAALERITREHAAFPAARQATTA 453          
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: UPI001C948C84 (transporter substrate-binding domain-containing protein n=3 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C948C84)

HSP 1 Score: 374 bits (961), Expect = 2.330e-117
Identity = 222/365 (60.82%), Postives = 253/365 (69.32%), Query Frame = 1
Query:    1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFEELAPT----GDDDWDGA---------------------------------------------------ADRALSDALLTADLGARVSALRDVISRFAGTEAAEKARTAATRLETDLAQKDRTAQAIARLDRAKSAKDTAALRALLQEFDGTALGFQVQLALFEVEAAQRATEAQANAALTAALLLTDPAAQISALQRITRDHADQPAAQQAA 930
            FNYTS DDTGAVRTYLVSPRE+ +DK LDA++LQ++GGD N +L GH+PM+MM   +P QELRMIHHP  +PQQYSTGTCQVHRRQ+EIP  RSP RHSCESTGGSSGSLLLDARTLAVVALHNQGGL PSGDSFN GHKIALINQA +LGFE + P     G D    A                                                   A +ALSDALLTADL +R+SALR VIS+FAGT+AA+KA  AA+RLE+DLA +DR AQA  RLDRAK+  D  ALR+LL EFDGTA GFQVQLALFE E+A R  E  AN ALT ALLL D  AQI+AL++ITR H  + AA +AA
Sbjct:  141 FNYTSKDDTGAVRTYLVSPRELKLDKKLDAMVLQVIGGDPNGDLGGHVPMKMMPSVDPFQELRMIHHPAGEPQQYSTGTCQVHRRQAEIPPERSPLRHSCESTGGSSGSLLLDARTLAVVALHNQGGLRPSGDSFNSGHKIALINQALDLGFEIVTPEAAGGGSDAATSALTDALLIFDPTRQAEALRRVIDRFPNSEAAAKAAMALDRLAGDSTSARETQAAQALSDALLTADLRSRISALRGVISQFAGTDAADKALAAASRLESDLASRDRDAQAQTRLDRAKADGDLDALRSLLSEFDGTAFGFQVQLALFEAESALRDAETAANTALTNALLLADRTAQIAALEQITRAHVGRAAATKAA 505          
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: A0A238KQX4_9RHOB (General L-amino acid-binding periplasmic protein AapJ n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238KQX4_9RHOB)

HSP 1 Score: 310 bits (795), Expect = 4.260e-94
Identity = 177/269 (65.80%), Postives = 205/269 (76.21%), Query Frame = 1
Query:    1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFEELAPTGDDDWDGAADRALSDALLTADLGARVSALRDVISRFAGTEAAEKARTAATRLETDLAQKDRTAQAIARLDRAKSAKDT----AALRALLQEFDGTALGFQVQLALFEVEAA 795
            FNYTS DDTGAVRTYLVSPRE+A+DKDLDAL+LQI+GGDANT+L GHIPM+MM+R EP QELRMIHHPGA+PQQYSTGTCQVHRRQ+EIPD RSP RH+CESTGGSSGSLLLDA+TLAVVALHNQGGL PSGDSFN GHKIA+INQ  NLGFEE  P    D D AA RAL++ALL  D  AR  AL+ + + F GT+AA+KA  A  ++E D A++DR  +A   L  A    D     AAL A+ ++ DG     Q  LAL  + AA
Sbjct:  141 FNYTSRDDTGAVRTYLVSPRELALDKDLDALVLQIVGGDANTDLGGHIPMKMMSRVEPFQELRMIHHPGAEPQQYSTGTCQVHRRQTEIPDDRSPLRHTCESTGGSSGSLLLDAQTLAVVALHNQGGLEPSGDSFNSGHKIAMINQVLNLGFEEFRPETGSDGD-AATRALANALLMFDPVARAEALKKLTADFPGTDAADKAVQALGQIE-DAARRDRETRADRALTAALLTADRDEKIAALAAVTRDHDGLPAAQQAALALERLTAA 407          
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: UPI001C965DD1 (sel1 repeat family protein n=3 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C965DD1)

HSP 1 Score: 271 bits (694), Expect = 5.570e-80
Identity = 174/339 (51.33%), Postives = 215/339 (63.42%), Query Frame = 1
Query:    1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFEELAPTGDDDWDGAADRALSDALLTADLGARVSALRDVISRFAGTEAAEKARTAATRLETDLAQKDRTAQAIAR---LDRAKSAKDT-------AALRALLQEFDGTALGFQVQLALFEVEAAQRATEAQ-------------------ANAALTAALLLTDPAAQISALQRITRDHADQPAAQQAA 930
            F YTS D T  VRTY V+PRE+AV++ +DAL+LQ++G DAN++L GH P+RM T   P QEL MIHHPGA PQQYSTGTC+VHRRQ+E+    S  RH+CE+TGGSSG+LLLDARTL+VVALHNQGGL  SGD FNGGHKIA +N+A +LGF E A T     + AA+RAL+DALL ADL  R++ALR V +RFAGTE  EKARTAA R E  L Q     + + R   LD   +A +        AAL A+  +F  T    + +  L    AA    +A                    A  ALT ALL+T P A+ SALQ +    A  PAA++AA
Sbjct:  144 FEYTSRDLTELVRTYRVAPRELAVNQQVDALVLQVIG-DANSDLGGHFPLRMTTSVAPLQELVMIHHPGAQPQQYSTGTCKVHRRQAEVDGRVSALRHTCETTGGSSGALLLDARTLSVVALHNQGGLRSSGDGFNGGHKIASVNKALDLGFTEAAATPGPGPEFAANRALADALLVADLADRLAALRAVETRFAGTEIGEKARTAAARTEAALRQSREAEETVRRQQALDALAAALELPERPDRIAALEAVEAQFPATGAARRAEQVLLRERAAAEREQADRKRAXXXXXAKADADRLADARQALTEALLITSPEARRSALQAVVTAFAATPAAERAA 481          
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: A0A0W7WQ32_9RHOB (Uncharacterized protein n=1 Tax=Ponticoccus marisrubri TaxID=1685382 RepID=A0A0W7WQ32_9RHOB)

HSP 1 Score: 265 bits (678), Expect = 1.540e-79
Identity = 166/314 (52.87%), Postives = 201/314 (64.01%), Query Frame = 1
Query:    1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFEELA---PTGDD--DWDGAADRALSDALLTADLGARVSALRDVISRFAGTEAAEKARTAATRLETDLA----------QKDRTAQAIARLDRAKSAKDTAALRALLQEFDGTALGFQVQLALFEVEAAQRATEAQANAALTAALLLTDPAAQISALQRITRD 897
            FNYT  D T AVRTY V PR +A D  LDA++LQ++GGDAN +L GH+P+RMMTR EP QELRMIHHPG DPQQYSTGTCQVHRRQSEIP   S FRH+CESTGGSSG+LL DARTLAVVALHNQGGL+  GDSFNGGHKI  I  A  LGFE +    P  D   D   AA  AL  AL+  D   R+ AL  V   F GT AA  A+   T+L  +LA          + +RT  A + L+ A +  D  ALRA+   F GT    + +  L  ++AA+   E +AN AL+AAL + D   +I+ L  + +D
Sbjct:  141 FNYTDQDTTSAVRTYRVLPRALAEDAALDAMVLQVIGGDANADLGGHLPLRMMTRAEPFQELRMIHHPGGDPQQYSTGTCQVHRRQSEIPPEDSVFRHTCESTGGSSGALLFDARTLAVVALHNQGGLSRVGDSFNGGHKIGPIAAALGLGFESVEQAEPERDPAPDRAAAATAALGAALIPTDPQTRMEALARVAEDFDGTPAAATAKRLQTQLRDELAAEQARQSERAEAERTQAAQSALEAALNPLDPTALRAVRDRFAGTEAARRAEAELDRIDAAET-LERRANDALSAALRIDDLTRRIAQLLVVAKD 453          
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: X6KZ81_9RHOB (Uncharacterized protein n=1 Tax=Rhodobacteraceae bacterium PD-2 TaxID=1169855 RepID=X6KZ81_9RHOB)

HSP 1 Score: 242 bits (617), Expect = 8.970e-73
Identity = 149/287 (51.92%), Postives = 187/287 (65.16%), Query Frame = 1
Query:    1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFEEL------------APTGDDDWDGAADRALSDALLTADLGARVSALRDVISRFAGTEAAEKARTAATRLETDLAQKDRTAQAIARLDRA----KSAKDTAALRALLQEFDGTALGFQVQLALFEVEAAQRATEA 813
            F+YTS DD GAVRTY V    +AVD+DLDALLLQ++G DAN +L GHIPM+M +   P Q L MIHHPGA+PQQYSTGTCQ+HRRQ EI   RSP RH+CES GGSSGSLL DARTLAVV LHNQGGL+   +SFNGGHKIA+IN+AF LGFEE+            AP+  +     A  ALS+ALL  D   +++ LR VI  + GT+ A++A++   RLE D      T QA A L  A    + A    AL+A+ +++ GT        A   +EA+ +A +A
Sbjct:  138 FDYTSKDDLGAVRTYRVLTGPMAVDEDLDALLLQVIG-DANADLGGHIPMKMRSALHPYQSLAMIHHPGAEPQQYSTGTCQIHRRQDEIDAGRSPLRHTCESIGGSSGSLLFDARTLAVVGLHNQGGLSRLDESFNGGHKIAMINEAFGLGFEEVGTAAPAASPVARAPSRGEQ----ARAALSEALLEPDAETQIARLRAVIEEYPGTDMAKRAQSMLARLE-DQQASALTTQANAALTEALLMPEGAAKLTALQAVARDYAGTTAAVNAGDAARRLEASMQAAQA 418          
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: A0A238L5F3_9RHOB (Beta-lactamase HcpC n=1 Tax=Pelagimonas varians TaxID=696760 RepID=A0A238L5F3_9RHOB)

HSP 1 Score: 226 bits (577), Expect = 4.110e-64
Identity = 125/220 (56.82%), Postives = 160/220 (72.73%), Query Frame = 1
Query:    1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFEE--LAPTGDDDWDGAADRALSDALLTADLGA-------------RVSALRDVISRFAGTEAAEKART 615
            FNYT+ DD G+VRT+ V  RE+  D +LDALLLQ++G DAN ++ GHIPM+M+T+ EP QELRM+HHP A+PQQYSTGTCQVHRR SEI   RS FRH+CESTGGSSGSLL DARTL+VVALHNQGGL+  G+SFNGGHKIA+INQAF+LGF +  +AP    D +  A +A S A+  ++                ++ ALR +++ F G+ +A  A+T
Sbjct:  314 FNYTAKDDIGSVRTFRVHSRELKRDIELDALLLQVIG-DANDDIGGHIPMQMVTQVEPFQELRMVHHPAAEPQQYSTGTCQVHRRNSEIDVDRSSFRHTCESTGGSSGSLLFDARTLSVVALHNQGGLSRDGESFNGGHKIAMINQAFDLGFRDAAIAPL---DQNLTAVQAFSAAIALSNTAPEAGGLQSMKSKKLQLDALRKIVTDFPGSPSAHSAQT 529          
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: UPI001C5F225C (extracellular solute-binding protein n=1 Tax=Mameliella sp. CS4 TaxID=2862329 RepID=UPI001C5F225C)

HSP 1 Score: 206 bits (523), Expect = 4.730e-57
Identity = 113/211 (53.55%), Postives = 141/211 (66.82%), Query Frame = 1
Query:    1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFEELAPTGD-----DDWDGAADRALSDALLTADLGARVSALRDVISRFAGTEAAEKARTA 618
            F YT++D TG V+TY VS RE+  D DLDA++LQI G DAN  L GH+PM M +R  P + L MIHHP  DPQQ+S+GTCQVH  Q+++P+  S  RHSCE+TGGSSGSLLLDAR+LAVV LHNQGGL   G  +NGGHKIA +  A  LGF  +A          D +  A  AL++AL    + AR +AL DV++ F  + AA  AR A
Sbjct:  140 FGYTAADFTGNVKTYAVSTRELTRDADLDAMVLQIFGADANEALGGHVPMVMQSRVRPRRALTMIHHPNGDPQQFSSGTCQVHPDQAKLPEAASQLRHSCETTGGSSGSLLLDARSLAVVGLHNQGGLHGRG-GYNGGHKIAAVEAALGLGFRAIAAPAPVTEPKPDPETLAQEALTEALQLDGIEARRTALEDVVTTFPASRAARSARNA 349          
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: A0A6F8Q1U4_9RHOB (Serine protease n=3 Tax=Mameliella alba TaxID=561184 RepID=A0A6F8Q1U4_9RHOB)

HSP 1 Score: 204 bits (520), Expect = 1.270e-56
Identity = 116/211 (54.98%), Postives = 141/211 (66.82%), Query Frame = 1
Query:    1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFE-ELAPTG----DDDWDGAADRALSDALLTADLGARVSALRDVISRFAGTEAAEKARTA 618
            F YT++D TG V+TY VS RE+A D+ LDA++LQI G DAN  L GH+PM M  R  P + L MIHHP  DPQQ+S+GTCQVH  Q ++P+  S  RHSCE+TGGSSGSLLLDAR+LAVV LHNQGGL      FNGGHKIA +  A  LGF  E AP        D +  A  AL++AL    + AR +AL DV+S+F  + AA  AR A
Sbjct:  140 FGYTAADFTGDVKTYAVSTRELARDEGLDAMVLQIFGADANEALGGHVPMVMQPRVRPRRALTMIHHPNGDPQQFSSGTCQVHPDQGKLPEAASQLRHSCETTGGSSGSLLLDARSLAVVGLHNQGGLXXX-XXFNGGHKIAAVEAALGLGFHAEAAPAPVVIPKPDPETLAQEALTEALQLDGIEARRAALEDVVSQFPDSRAARSARNA 349          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A222E7S8_9RHOB9.190e-19698.40Putative amino-acid ABC transporter-binding protei... [more]
A0A239EVH0_9RHOB6.710e-17388.14ABC-type amino acid transport substrate-binding pr... [more]
UPI001C948C842.330e-11760.82transporter substrate-binding domain-containing pr... [more]
A0A238KQX4_9RHOB4.260e-9465.80General L-amino acid-binding periplasmic protein A... [more]
UPI001C965DD15.570e-8051.33sel1 repeat family protein n=3 Tax=Rhodobacterales... [more]
A0A0W7WQ32_9RHOB1.540e-7952.87Uncharacterized protein n=1 Tax=Ponticoccus marisr... [more]
X6KZ81_9RHOB8.970e-7351.92Uncharacterized protein n=1 Tax=Rhodobacteraceae b... [more]
A0A238L5F3_9RHOB4.110e-6456.82Beta-lactamase HcpC n=1 Tax=Pelagimonas varians Ta... [more]
UPI001C5F225C4.730e-5753.55extracellular solute-binding protein n=1 Tax=Mamel... [more]
A0A6F8Q1U4_9RHOB1.270e-5654.98Serine protease n=3 Tax=Mameliella alba TaxID=5611... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100720contigL-digitata_M_contig100720:1..936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog388399.SSE37_20972
PFAMsBeta_helix,CBM_35,Glyco_hydro_98M
Model size936
Max annot lvl2|Bacteria
KEGG koko:K10297,ko:K15923,ko:K18197
KEGG Pathwayko00511,map00511
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.26e-54
EggNOG OGsCOG4677@1|root,COG4677@2|Bacteria
EC3.2.1.51,4.2.2.23
Descriptionpectinesterase activity
Cds size936
COG categoryG
CAZyGH95,PL11
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406609.8617258-CDS-L-digitata_M_contig100720:0..9361682406609.8617258-CDS-L-digitata_M_contig100720:0..936Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100720 1..936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100720.2.1prot_L-digitata_M_contig100720.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100720 1..936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100720.2.1

>prot_L-digitata_M_contig100720.2.1 ID=prot_L-digitata_M_contig100720.2.1|Name=mRNA_L-digitata_M_contig100720.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=312bp
FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPM
RMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSC
ESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNL
GFEELAPTGDDDWDGAADRALSDALLTADLGARVSALRDVISRFAGTEAA
EKARTAATRLETDLAQKDRTAQAIARLDRAKSAKDTAALRALLQEFDGTA
LGFQVQLALFEVEAAQRATEAQANAALTAALLLTDPAAQISALQRITRDH
ADQPAAQQAALA
back to top

mRNA from alignment at L-digitata_M_contig100720:1..936-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100720.2.1 ID=mRNA_L-digitata_M_contig100720.2.1|Name=mRNA_L-digitata_M_contig100720.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=936bp|location=Sequence derived from alignment at L-digitata_M_contig100720:1..936- (Laminaria digitata LdigPH10_18mv male)
TTCAACTACACCTCCAGCGACGACACCGGCGCGGTGCGCACCTATCTGGT TTCCCCGCGTGAGGTGGCGGTGGACAAGGATCTCGACGCGCTCTTGCTGC AGATCCTCGGCGGCGATGCCAACACCGAACTGGACGGCCATATCCCGATG CGGATGATGACCCGCACCGAACCCAATCAGGAACTGCGGATGATCCACCA TCCCGGCGCCGACCCGCAGCAGTATTCCACCGGCACCTGTCAGGTGCACC GCCGCCAGTCCGAAATCCCCGACACCCGCTCTCCGTTCCGCCACAGCTGC GAAAGCACCGGCGGCTCGTCCGGGTCGCTGCTGCTGGACGCGCGCACGCT GGCGGTGGTGGCGCTGCACAATCAGGGCGGGCTGGCACCCTCTGGCGACA GCTTTAACGGAGGGCACAAGATCGCGCTGATCAATCAGGCGTTCAATCTG GGGTTTGAGGAACTGGCCCCCACCGGCGACGACGACTGGGACGGCGCGGC CGACCGCGCGCTGTCCGATGCGCTGCTGACAGCCGATCTGGGGGCCCGCG TCAGCGCCCTGCGCGACGTGATCTCACGCTTTGCCGGGACAGAGGCCGCC GAAAAGGCCCGGACCGCCGCAACCCGGCTGGAAACCGATCTGGCGCAAAA GGACCGCACCGCGCAGGCCATCGCCCGGCTGGACCGGGCCAAATCCGCCA AAGACACCGCCGCATTGCGTGCGTTGTTGCAGGAATTTGACGGCACCGCG CTGGGATTTCAGGTCCAGCTTGCCCTGTTCGAGGTAGAGGCCGCGCAGCG CGCCACCGAGGCACAGGCCAATGCCGCCCTCACCGCCGCCCTCCTGCTCA CCGACCCCGCCGCCCAGATCAGCGCGCTGCAGCGGATCACCCGCGACCAC GCGGACCAGCCCGCCGCCCAACAGGCGGCCTTGGCG
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig100720:1..936-

>mRNA_L-digitata_M_contig100720.2.1 ID=mRNA_L-digitata_M_contig100720.2.1|Name=mRNA_L-digitata_M_contig100720.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=936bp|location=Sequence derived from alignment at L-digitata_M_contig100720:1..936- (Laminaria digitata LdigPH10_18mv male)
TTCAACTACACCTCCAGCGACGACACCGGCGCGGTGCGCACCTATCTGGT
TTCCCCGCGTGAGGTGGCGGTGGACAAGGATCTCGACGCGCTCTTGCTGC
AGATCCTCGGCGGCGATGCCAACACCGAACTGGACGGCCATATCCCGATG
CGGATGATGACCCGCACCGAACCCAATCAGGAACTGCGGATGATCCACCA
TCCCGGCGCCGACCCGCAGCAGTATTCCACCGGCACCTGTCAGGTGCACC
GCCGCCAGTCCGAAATCCCCGACACCCGCTCTCCGTTCCGCCACAGCTGC
GAAAGCACCGGCGGCTCGTCCGGGTCGCTGCTGCTGGACGCGCGCACGCT
GGCGGTGGTGGCGCTGCACAATCAGGGCGGGCTGGCACCCTCTGGCGACA
GCTTTAACGGAGGGCACAAGATCGCGCTGATCAATCAGGCGTTCAATCTG
GGGTTTGAGGAACTGGCCCCCACCGGCGACGACGACTGGGACGGCGCGGC
CGACCGCGCGCTGTCCGATGCGCTGCTGACAGCCGATCTGGGGGCCCGCG
TCAGCGCCCTGCGCGACGTGATCTCACGCTTTGCCGGGACAGAGGCCGCC
GAAAAGGCCCGGACCGCCGCAACCCGGCTGGAAACCGATCTGGCGCAAAA
GGACCGCACCGCGCAGGCCATCGCCCGGCTGGACCGGGCCAAATCCGCCA
AAGACACCGCCGCATTGCGTGCGTTGTTGCAGGAATTTGACGGCACCGCG
CTGGGATTTCAGGTCCAGCTTGCCCTGTTCGAGGTAGAGGCCGCGCAGCG
CGCCACCGAGGCACAGGCCAATGCCGCCCTCACCGCCGCCCTCCTGCTCA
CCGACCCCGCCGCCCAGATCAGCGCGCTGCAGCGGATCACCCGCGACCAC
GCGGACCAGCCCGCCGCCCAACAGGCGGCCTTGGCG
back to top