mRNA_L-digitata_M_contig100720.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: A0A222E7S8_9RHOB (Putative amino-acid ABC transporter-binding protein YhdW n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E7S8_9RHOB) HSP 1 Score: 566 bits (1458), Expect = 9.190e-196 Identity = 307/312 (98.40%), Postives = 310/312 (99.36%), Query Frame = 1
Query: 1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFEELAPTGDDDWDGAADRALSDALLTADLGARVSALRDVISRFAGTEAAEKARTAATRLETDLAQKDRTAQAIARLDRAKSAKDTAALRALLQEFDGTALGFQVQLALFEVEAAQRATEAQANAALTAALLLTDPAAQISALQRITRDHADQPAAQQAALA 936
FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAP+GDSFNGGHKIALINQAFNLGFEELAPTGDDD DGAADRALSDALLTA+LGARVSALR VISRFAGTEAAEKA+TAATRLETDLAQKDRTAQAIARLDRAKSAKDTAALRALLQEFDGTALGFQVQLALFEVEAAQRATEAQANAALTAALLLTDPAAQISALQRITRDHADQPAAQQAALA
Sbjct: 145 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPTGDSFNGGHKIALINQAFNLGFEELAPTGDDDRDGAADRALSDALLTAELGARVSALRGVISRFAGTEAAEKAQTAATRLETDLAQKDRTAQAIARLDRAKSAKDTAALRALLQEFDGTALGFQVQLALFEVEAAQRATEAQANAALTAALLLTDPAAQISALQRITRDHADQPAAQQAALA 456
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: A0A239EVH0_9RHOB (ABC-type amino acid transport substrate-binding protein n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239EVH0_9RHOB) HSP 1 Score: 507 bits (1306), Expect = 6.710e-173 Identity = 275/312 (88.14%), Postives = 293/312 (93.91%), Query Frame = 1
Query: 1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFEELAPTGDDDWDGAADRALSDALLTADLGARVSALRDVISRFAGTEAAEKARTAATRLETDLAQKDRTAQAIARLDRAKSAKDTAALRALLQEFDGTALGFQVQLALFEVEAAQRATEAQANAALTAALLLTDPAAQISALQRITRDHADQPAAQQAALA 936
FNYTSSDDTGAV TYLV+PREVA+DKDLDALLLQILG DANT+L GHIPM+MMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGL P+GDSFNGGHKIALINQAFNLGF+ELAPTG D+ DG ADRALSDALLTA+L ARV+ALR VISRFAGTEAAEKA+TAATRLETDLAQKDR A AIARLDRAKSAKDT LRA+LQEFDGTALGFQVQLALFEVEAAQR TE+QANAALTAALLLTDP A+++AL+RITR+HA PAA+QA A
Sbjct: 142 FNYTSSDDTGAVLTYLVAPREVALDKDLDALLLQILGADANTDLGGHIPMKMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLKPTGDSFNGGHKIALINQAFNLGFQELAPTGGDNRDGDADRALSDALLTAELTARVTALRGVISRFAGTEAAEKAQTAATRLETDLAQKDRNALAIARLDRAKSAKDTDTLRAMLQEFDGTALGFQVQLALFEVEAAQRVTESQANAALTAALLLTDPNAKMAALERITREHAAFPAARQATTA 453
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: UPI001C948C84 (transporter substrate-binding domain-containing protein n=3 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C948C84) HSP 1 Score: 374 bits (961), Expect = 2.330e-117 Identity = 222/365 (60.82%), Postives = 253/365 (69.32%), Query Frame = 1
Query: 1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFEELAPT----GDDDWDGA---------------------------------------------------ADRALSDALLTADLGARVSALRDVISRFAGTEAAEKARTAATRLETDLAQKDRTAQAIARLDRAKSAKDTAALRALLQEFDGTALGFQVQLALFEVEAAQRATEAQANAALTAALLLTDPAAQISALQRITRDHADQPAAQQAA 930
FNYTS DDTGAVRTYLVSPRE+ +DK LDA++LQ++GGD N +L GH+PM+MM +P QELRMIHHP +PQQYSTGTCQVHRRQ+EIP RSP RHSCESTGGSSGSLLLDARTLAVVALHNQGGL PSGDSFN GHKIALINQA +LGFE + P G D A A +ALSDALLTADL +R+SALR VIS+FAGT+AA+KA AA+RLE+DLA +DR AQA RLDRAK+ D ALR+LL EFDGTA GFQVQLALFE E+A R E AN ALT ALLL D AQI+AL++ITR H + AA +AA
Sbjct: 141 FNYTSKDDTGAVRTYLVSPRELKLDKKLDAMVLQVIGGDPNGDLGGHVPMKMMPSVDPFQELRMIHHPAGEPQQYSTGTCQVHRRQAEIPPERSPLRHSCESTGGSSGSLLLDARTLAVVALHNQGGLRPSGDSFNSGHKIALINQALDLGFEIVTPEAAGGGSDAATSALTDALLIFDPTRQAEALRRVIDRFPNSEAAAKAAMALDRLAGDSTSARETQAAQALSDALLTADLRSRISALRGVISQFAGTDAADKALAAASRLESDLASRDRDAQAQTRLDRAKADGDLDALRSLLSEFDGTAFGFQVQLALFEAESALRDAETAANTALTNALLLADRTAQIAALEQITRAHVGRAAATKAA 505
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: A0A238KQX4_9RHOB (General L-amino acid-binding periplasmic protein AapJ n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238KQX4_9RHOB) HSP 1 Score: 310 bits (795), Expect = 4.260e-94 Identity = 177/269 (65.80%), Postives = 205/269 (76.21%), Query Frame = 1
Query: 1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFEELAPTGDDDWDGAADRALSDALLTADLGARVSALRDVISRFAGTEAAEKARTAATRLETDLAQKDRTAQAIARLDRAKSAKDT----AALRALLQEFDGTALGFQVQLALFEVEAA 795
FNYTS DDTGAVRTYLVSPRE+A+DKDLDAL+LQI+GGDANT+L GHIPM+MM+R EP QELRMIHHPGA+PQQYSTGTCQVHRRQ+EIPD RSP RH+CESTGGSSGSLLLDA+TLAVVALHNQGGL PSGDSFN GHKIA+INQ NLGFEE P D D AA RAL++ALL D AR AL+ + + F GT+AA+KA A ++E D A++DR +A L A D AAL A+ ++ DG Q LAL + AA
Sbjct: 141 FNYTSRDDTGAVRTYLVSPRELALDKDLDALVLQIVGGDANTDLGGHIPMKMMSRVEPFQELRMIHHPGAEPQQYSTGTCQVHRRQTEIPDDRSPLRHTCESTGGSSGSLLLDAQTLAVVALHNQGGLEPSGDSFNSGHKIAMINQVLNLGFEEFRPETGSDGD-AATRALANALLMFDPVARAEALKKLTADFPGTDAADKAVQALGQIE-DAARRDRETRADRALTAALLTADRDEKIAALAAVTRDHDGLPAAQQAALALERLTAA 407
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: UPI001C965DD1 (sel1 repeat family protein n=3 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C965DD1) HSP 1 Score: 271 bits (694), Expect = 5.570e-80 Identity = 174/339 (51.33%), Postives = 215/339 (63.42%), Query Frame = 1
Query: 1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFEELAPTGDDDWDGAADRALSDALLTADLGARVSALRDVISRFAGTEAAEKARTAATRLETDLAQKDRTAQAIAR---LDRAKSAKDT-------AALRALLQEFDGTALGFQVQLALFEVEAAQRATEAQ-------------------ANAALTAALLLTDPAAQISALQRITRDHADQPAAQQAA 930
F YTS D T VRTY V+PRE+AV++ +DAL+LQ++G DAN++L GH P+RM T P QEL MIHHPGA PQQYSTGTC+VHRRQ+E+ S RH+CE+TGGSSG+LLLDARTL+VVALHNQGGL SGD FNGGHKIA +N+A +LGF E A T + AA+RAL+DALL ADL R++ALR V +RFAGTE EKARTAA R E L Q + + R LD +A + AAL A+ +F T + + L AA +A A ALT ALL+T P A+ SALQ + A PAA++AA
Sbjct: 144 FEYTSRDLTELVRTYRVAPRELAVNQQVDALVLQVIG-DANSDLGGHFPLRMTTSVAPLQELVMIHHPGAQPQQYSTGTCKVHRRQAEVDGRVSALRHTCETTGGSSGALLLDARTLSVVALHNQGGLRSSGDGFNGGHKIASVNKALDLGFTEAAATPGPGPEFAANRALADALLVADLADRLAALRAVETRFAGTEIGEKARTAAARTEAALRQSREAEETVRRQQALDALAAALELPERPDRIAALEAVEAQFPATGAARRAEQVLLRERAAAEREQADRKRAXXXXXAKADADRLADARQALTEALLITSPEARRSALQAVVTAFAATPAAERAA 481
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: A0A0W7WQ32_9RHOB (Uncharacterized protein n=1 Tax=Ponticoccus marisrubri TaxID=1685382 RepID=A0A0W7WQ32_9RHOB) HSP 1 Score: 265 bits (678), Expect = 1.540e-79 Identity = 166/314 (52.87%), Postives = 201/314 (64.01%), Query Frame = 1
Query: 1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFEELA---PTGDD--DWDGAADRALSDALLTADLGARVSALRDVISRFAGTEAAEKARTAATRLETDLA----------QKDRTAQAIARLDRAKSAKDTAALRALLQEFDGTALGFQVQLALFEVEAAQRATEAQANAALTAALLLTDPAAQISALQRITRD 897
FNYT D T AVRTY V PR +A D LDA++LQ++GGDAN +L GH+P+RMMTR EP QELRMIHHPG DPQQYSTGTCQVHRRQSEIP S FRH+CESTGGSSG+LL DARTLAVVALHNQGGL+ GDSFNGGHKI I A LGFE + P D D AA AL AL+ D R+ AL V F GT AA A+ T+L +LA + +RT A + L+ A + D ALRA+ F GT + + L ++AA+ E +AN AL+AAL + D +I+ L + +D
Sbjct: 141 FNYTDQDTTSAVRTYRVLPRALAEDAALDAMVLQVIGGDANADLGGHLPLRMMTRAEPFQELRMIHHPGGDPQQYSTGTCQVHRRQSEIPPEDSVFRHTCESTGGSSGALLFDARTLAVVALHNQGGLSRVGDSFNGGHKIGPIAAALGLGFESVEQAEPERDPAPDRAAAATAALGAALIPTDPQTRMEALARVAEDFDGTPAAATAKRLQTQLRDELAAEQARQSERAEAERTQAAQSALEAALNPLDPTALRAVRDRFAGTEAARRAEAELDRIDAAET-LERRANDALSAALRIDDLTRRIAQLLVVAKD 453
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: X6KZ81_9RHOB (Uncharacterized protein n=1 Tax=Rhodobacteraceae bacterium PD-2 TaxID=1169855 RepID=X6KZ81_9RHOB) HSP 1 Score: 242 bits (617), Expect = 8.970e-73 Identity = 149/287 (51.92%), Postives = 187/287 (65.16%), Query Frame = 1
Query: 1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFEEL------------APTGDDDWDGAADRALSDALLTADLGARVSALRDVISRFAGTEAAEKARTAATRLETDLAQKDRTAQAIARLDRA----KSAKDTAALRALLQEFDGTALGFQVQLALFEVEAAQRATEA 813
F+YTS DD GAVRTY V +AVD+DLDALLLQ++G DAN +L GHIPM+M + P Q L MIHHPGA+PQQYSTGTCQ+HRRQ EI RSP RH+CES GGSSGSLL DARTLAVV LHNQGGL+ +SFNGGHKIA+IN+AF LGFEE+ AP+ + A ALS+ALL D +++ LR VI + GT+ A++A++ RLE D T QA A L A + A AL+A+ +++ GT A +EA+ +A +A
Sbjct: 138 FDYTSKDDLGAVRTYRVLTGPMAVDEDLDALLLQVIG-DANADLGGHIPMKMRSALHPYQSLAMIHHPGAEPQQYSTGTCQIHRRQDEIDAGRSPLRHTCESIGGSSGSLLFDARTLAVVGLHNQGGLSRLDESFNGGHKIAMINEAFGLGFEEVGTAAPAASPVARAPSRGEQ----ARAALSEALLEPDAETQIARLRAVIEEYPGTDMAKRAQSMLARLE-DQQASALTTQANAALTEALLMPEGAAKLTALQAVARDYAGTTAAVNAGDAARRLEASMQAAQA 418
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: A0A238L5F3_9RHOB (Beta-lactamase HcpC n=1 Tax=Pelagimonas varians TaxID=696760 RepID=A0A238L5F3_9RHOB) HSP 1 Score: 226 bits (577), Expect = 4.110e-64 Identity = 125/220 (56.82%), Postives = 160/220 (72.73%), Query Frame = 1
Query: 1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFEE--LAPTGDDDWDGAADRALSDALLTADLGA-------------RVSALRDVISRFAGTEAAEKART 615
FNYT+ DD G+VRT+ V RE+ D +LDALLLQ++G DAN ++ GHIPM+M+T+ EP QELRM+HHP A+PQQYSTGTCQVHRR SEI RS FRH+CESTGGSSGSLL DARTL+VVALHNQGGL+ G+SFNGGHKIA+INQAF+LGF + +AP D + A +A S A+ ++ ++ ALR +++ F G+ +A A+T
Sbjct: 314 FNYTAKDDIGSVRTFRVHSRELKRDIELDALLLQVIG-DANDDIGGHIPMQMVTQVEPFQELRMVHHPAAEPQQYSTGTCQVHRRNSEIDVDRSSFRHTCESTGGSSGSLLFDARTLSVVALHNQGGLSRDGESFNGGHKIAMINQAFDLGFRDAAIAPL---DQNLTAVQAFSAAIALSNTAPEAGGLQSMKSKKLQLDALRKIVTDFPGSPSAHSAQT 529
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: UPI001C5F225C (extracellular solute-binding protein n=1 Tax=Mameliella sp. CS4 TaxID=2862329 RepID=UPI001C5F225C) HSP 1 Score: 206 bits (523), Expect = 4.730e-57 Identity = 113/211 (53.55%), Postives = 141/211 (66.82%), Query Frame = 1
Query: 1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFEELAPTGD-----DDWDGAADRALSDALLTADLGARVSALRDVISRFAGTEAAEKARTA 618
F YT++D TG V+TY VS RE+ D DLDA++LQI G DAN L GH+PM M +R P + L MIHHP DPQQ+S+GTCQVH Q+++P+ S RHSCE+TGGSSGSLLLDAR+LAVV LHNQGGL G +NGGHKIA + A LGF +A D + A AL++AL + AR +AL DV++ F + AA AR A
Sbjct: 140 FGYTAADFTGNVKTYAVSTRELTRDADLDAMVLQIFGADANEALGGHVPMVMQSRVRPRRALTMIHHPNGDPQQFSSGTCQVHPDQAKLPEAASQLRHSCETTGGSSGSLLLDARSLAVVGLHNQGGLHGRG-GYNGGHKIAAVEAALGLGFRAIAAPAPVTEPKPDPETLAQEALTEALQLDGIEARRTALEDVVTTFPASRAARSARNA 349
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Match: A0A6F8Q1U4_9RHOB (Serine protease n=3 Tax=Mameliella alba TaxID=561184 RepID=A0A6F8Q1U4_9RHOB) HSP 1 Score: 204 bits (520), Expect = 1.270e-56 Identity = 116/211 (54.98%), Postives = 141/211 (66.82%), Query Frame = 1
Query: 1 FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMRMMTRTEPNQELRMIHHPGADPQQYSTGTCQVHRRQSEIPDTRSPFRHSCESTGGSSGSLLLDARTLAVVALHNQGGLAPSGDSFNGGHKIALINQAFNLGFE-ELAPTG----DDDWDGAADRALSDALLTADLGARVSALRDVISRFAGTEAAEKARTA 618
F YT++D TG V+TY VS RE+A D+ LDA++LQI G DAN L GH+PM M R P + L MIHHP DPQQ+S+GTCQVH Q ++P+ S RHSCE+TGGSSGSLLLDAR+LAVV LHNQGGL FNGGHKIA + A LGF E AP D + A AL++AL + AR +AL DV+S+F + AA AR A
Sbjct: 140 FGYTAADFTGDVKTYAVSTRELARDEGLDAMVLQIFGADANEALGGHVPMVMQPRVRPRRALTMIHHPNGDPQQFSSGTCQVHPDQGKLPEAASQLRHSCETTGGSSGSLLLDARSLAVVGLHNQGGLXXX-XXFNGGHKIAAVEAALGLGFHAEAAPAPVVIPKPDPETLAQEALTEALQLDGIEARRAALEDVVSQFPDSRAARSARNA 349 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100720.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100720.2.1 >prot_L-digitata_M_contig100720.2.1 ID=prot_L-digitata_M_contig100720.2.1|Name=mRNA_L-digitata_M_contig100720.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=312bp FNYTSSDDTGAVRTYLVSPREVAVDKDLDALLLQILGGDANTELDGHIPMback to top mRNA from alignment at L-digitata_M_contig100720:1..936- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100720.2.1 ID=mRNA_L-digitata_M_contig100720.2.1|Name=mRNA_L-digitata_M_contig100720.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=936bp|location=Sequence derived from alignment at L-digitata_M_contig100720:1..936- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100720:1..936- >mRNA_L-digitata_M_contig100720.2.1 ID=mRNA_L-digitata_M_contig100720.2.1|Name=mRNA_L-digitata_M_contig100720.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=936bp|location=Sequence derived from alignment at L-digitata_M_contig100720:1..936- (Laminaria digitata LdigPH10_18mv male)back to top |