mRNA_L-digitata_M_contig100709.3.2 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100709.3.2 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI) HSP 1 Score: 122 bits (307), Expect = 1.040e-28 Identity = 92/239 (38.49%), Postives = 115/239 (48.12%), Query Frame = 1
Query: 4 FLSITGESTLAEVRGGYQTRMFEVFPGGKLTLTQLKLSGGSFEGSGGAIYSHSAALVLDSCTFQGNVAADGDGGAVWAERGNITIIRGEFLDNNASVYGGAVAAAGVS------------------SLVVQGGDTSFTSNIATGA---NEELSLLDDLS--------------EGVDGGGAVAFLFASANIADSVFDGNNAQFSGGALLGGNGTYITVDGCKFENNTAMEHGGAIAAAS 615
FLSITGE AEV GG QTRMF V G LTLT L+LSGGS SGGAI S A++ LD+C F GNVA G L G +T+ +N AT + +E + + ++ S + VDGGGA AF +A NI+DSVF N AQ SGGA+ GGN T + ++GCKFENNT + +G A+AA S
Sbjct: 119 FLSITGEDDSAEVLGGGQTRMFYVSSSGGLTLTDLRLSGGS-AASGGAIESSMASVTLDTCVFNGNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCGGNETTAFANDATSSCSLSEAVFIANNASRETEIQYPSYWVSTDEVDGGGAAAFWYAEVNISDSVFGSNYAQLSGGAVFGGNSTEMAINGCKFENNTTLGYGAAVAACS 356
BLAST of mRNA_L-digitata_M_contig100709.3.2 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE) HSP 1 Score: 104 bits (259), Expect = 2.730e-22 Identity = 82/222 (36.94%), Postives = 102/222 (45.95%), Query Frame = 1
Query: 4 FLSITGESTLAEVRGGYQTRMFEVFPGGKLTLTQLKLSGGSFEGSGGAIYSHSAALVLDSCTFQGNVAADGDGGAVWAERGNITIIRGEFLDNNASVYG---------------------------GAVAAAGVSSLVVQGG--DTSFTSNIATGANEELSLLDDLSEGVD--GGGAVAFLFASANIADSVFDGNNAQFSGGALLGGNGTYITVDGCKFENN 576
FLSITGE AEV GG QT+MF V G LTLT L+LSGGS SGGAI S A++ LD+C F NVA G G + GV S D +FTSN+AT E+S D + D GGGA AF A+ I +S+F+ N AQ SGG + GG+G+ +++DGC NN
Sbjct: 90 FLSITGEDGSAEVLGGGQTQMFYVSSSGGLTLTDLRLSGGS-AASGGAIESSMASVTLDTCIFSSNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCSGGVESSAPSCSLSDATFTSNVAT-TGAEVSFSDTIETWADLYGGGAAAFYLAAVEITNSLFELNYAQVSGGGIFGGSGSSMSIDGCTINNN 309
BLAST of mRNA_L-digitata_M_contig100709.3.2 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 2.350e-19 Identity = 53/81 (65.43%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 4 FLSITGESTLAEVRGGYQTRMFEVFPGGKLTLTQLKLSGGSFEGSGGAIYSHSAALVLDSCTFQGNVAADGDGGAVWAERG 246
FLSITGE+ A VRGG Q RMF V P G LTLT LKLSGG GGAI S AA+ L+SC F GN+A DGDGGAVW E G
Sbjct: 81 FLSITGENDTAGVRGGGQIRMFGVSPAGGLTLTDLKLSGGR-AARGGAIRSSMAAVTLNSCAFDGNIATDGDGGAVWVEGG 160
BLAST of mRNA_L-digitata_M_contig100709.3.2 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 3.080e-13 Identity = 46/71 (64.79%), Postives = 49/71 (69.01%), Query Frame = 1
Query: 4 FLSITGESTLAEVRGGYQTRMFEVFPGGKLTLTQLKLSGGSFEGSGGAIYSHSAALVLDSCTFQGNVAADG 216
FLSITGE AEVRGG QTRMF V G LTLT LKLSGGS SGGAI+S A + L+SC F GN A G
Sbjct: 80 FLSITGEDDSAEVRGGGQTRMFYVSTLGGLTLTDLKLSGGS-AASGGAIHSSMATVALNSCVFDGNFATAG 149
BLAST of mRNA_L-digitata_M_contig100709.3.2 vs. uniprot
Match: A0A6H5JB86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB86_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 5.680e-13 Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 1
Query: 4 FLSITGESTLAEVRGGYQTRMFEVFPGGKLTLTQLKLSGGSFEGSGGAIYSHSAALVLDSCTFQGNVAADG 216
FLSITGE AEV GG QT+MF + G LTLT LKLSGGS SGGA+Y+ +A++ L+SC F GN A G
Sbjct: 93 FLSITGEGDSAEVLGGGQTQMFYISSSGGLTLTDLKLSGGS-AASGGAVYASAASVALNSCVFDGNFATAG 162
BLAST of mRNA_L-digitata_M_contig100709.3.2 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 4.780e-12 Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 1
Query: 4 FLSITGESTLAEVRGGYQTRMFEVFPGGKLTLTQLKLSGGSFEGSGGAIYSHSAALVLDSCTFQGNVAADG 216
FLSITGE AEV GG QT+MF V G LTLT L+LSGGS SGGA+Y+ +A++ L++C F GN A G
Sbjct: 93 FLSITGEDDSAEVLGGGQTQMFYVSSSGGLTLTDLRLSGGS-AASGGAVYASAASVALNNCVFDGNFATAG 162
BLAST of mRNA_L-digitata_M_contig100709.3.2 vs. uniprot
Match: UPI001CC949D1 (hypothetical protein n=1 Tax=Methanobrevibacter sp. TMH8 TaxID=2848611 RepID=UPI001CC949D1) HSP 1 Score: 53.9 bits (128), Expect = 5.200e-5 Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 1
Query: 130 EGSGGAIYSHSAAL--VLDSCTFQGNVAADGDGGAVWAERGNITIIRGEFLDNNASVYGGAVAAAG-VSSLVVQGGDTSFTSNIATGANEELSLLDDLSEGVDGGGAVAFLFASANIADSVFDGNNAQFSGGAL 522
E GGAI++ + + ++DSC+F N A G GG++ GN+ I+R +F++N A++ GGAVA++G SS + D+SF+SN A L+++ + NI + F N A SG A+
Sbjct: 227 ENGGGAIFNDYSKIPIIIDSCSFINNFA--GVGGSI-TSNGNLNILRSKFINNTATMGGGAVASSGGESSYICNIYDSSFSSNSAPIGGAILNMV------------------TMNIFNCNFTNNKANESGAAI 339 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100709.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100709.3.2 >prot_L-digitata_M_contig100709.3.2 ID=prot_L-digitata_M_contig100709.3.2|Name=mRNA_L-digitata_M_contig100709.3.2|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=205bp MFLSITGESTLAEVRGGYQTRMFEVFPGGKLTLTQLKLSGGSFEGSGGAIback to top mRNA from alignment at L-digitata_M_contig100709:42..758- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100709.3.2 ID=mRNA_L-digitata_M_contig100709.3.2|Name=mRNA_L-digitata_M_contig100709.3.2|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=717bp|location=Sequence derived from alignment at L-digitata_M_contig100709:42..758- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100709:42..758- >mRNA_L-digitata_M_contig100709.3.2 ID=mRNA_L-digitata_M_contig100709.3.2|Name=mRNA_L-digitata_M_contig100709.3.2|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=615bp|location=Sequence derived from alignment at L-digitata_M_contig100709:42..758- (Laminaria digitata LdigPH10_18mv male)back to top |