mRNA_L-digitata_M_contig100709.3.2 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100709.3.2
Unique NamemRNA_L-digitata_M_contig100709.3.2
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100709.3.2 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.040e-28
Identity = 92/239 (38.49%), Postives = 115/239 (48.12%), Query Frame = 1
Query:    4 FLSITGESTLAEVRGGYQTRMFEVFPGGKLTLTQLKLSGGSFEGSGGAIYSHSAALVLDSCTFQGNVAADGDGGAVWAERGNITIIRGEFLDNNASVYGGAVAAAGVS------------------SLVVQGGDTSFTSNIATGA---NEELSLLDDLS--------------EGVDGGGAVAFLFASANIADSVFDGNNAQFSGGALLGGNGTYITVDGCKFENNTAMEHGGAIAAAS 615
            FLSITGE   AEV GG QTRMF V   G LTLT L+LSGGS   SGGAI S  A++ LD+C F GNVA  G                                                        L   G +T+  +N AT +   +E + + ++ S              + VDGGGA AF +A  NI+DSVF  N AQ SGGA+ GGN T + ++GCKFENNT + +G A+AA S
Sbjct:  119 FLSITGEDDSAEVLGGGQTRMFYVSSSGGLTLTDLRLSGGS-AASGGAIESSMASVTLDTCVFNGNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCGGNETTAFANDATSSCSLSEAVFIANNASRETEIQYPSYWVSTDEVDGGGAAAFWYAEVNISDSVFGSNYAQLSGGAVFGGNSTEMAINGCKFENNTTLGYGAAVAACS 356          
BLAST of mRNA_L-digitata_M_contig100709.3.2 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.730e-22
Identity = 82/222 (36.94%), Postives = 102/222 (45.95%), Query Frame = 1
Query:    4 FLSITGESTLAEVRGGYQTRMFEVFPGGKLTLTQLKLSGGSFEGSGGAIYSHSAALVLDSCTFQGNVAADGDGGAVWAERGNITIIRGEFLDNNASVYG---------------------------GAVAAAGVSSLVVQGG--DTSFTSNIATGANEELSLLDDLSEGVD--GGGAVAFLFASANIADSVFDGNNAQFSGGALLGGNGTYITVDGCKFENN 576
            FLSITGE   AEV GG QT+MF V   G LTLT L+LSGGS   SGGAI S  A++ LD+C F  NVA  G                                                       G   + GV S        D +FTSN+AT    E+S  D +    D  GGGA AF  A+  I +S+F+ N AQ SGG + GG+G+ +++DGC   NN
Sbjct:   90 FLSITGEDGSAEVLGGGQTQMFYVSSSGGLTLTDLRLSGGS-AASGGAIESSMASVTLDTCIFSSNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCSGGVESSAPSCSLSDATFTSNVAT-TGAEVSFSDTIETWADLYGGGAAAFYLAAVEITNSLFELNYAQVSGGGIFGGSGSSMSIDGCTINNN 309          
BLAST of mRNA_L-digitata_M_contig100709.3.2 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.350e-19
Identity = 53/81 (65.43%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    4 FLSITGESTLAEVRGGYQTRMFEVFPGGKLTLTQLKLSGGSFEGSGGAIYSHSAALVLDSCTFQGNVAADGDGGAVWAERG 246
            FLSITGE+  A VRGG Q RMF V P G LTLT LKLSGG     GGAI S  AA+ L+SC F GN+A DGDGGAVW E G
Sbjct:   81 FLSITGENDTAGVRGGGQIRMFGVSPAGGLTLTDLKLSGGR-AARGGAIRSSMAAVTLNSCAFDGNIATDGDGGAVWVEGG 160          
BLAST of mRNA_L-digitata_M_contig100709.3.2 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 3.080e-13
Identity = 46/71 (64.79%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    4 FLSITGESTLAEVRGGYQTRMFEVFPGGKLTLTQLKLSGGSFEGSGGAIYSHSAALVLDSCTFQGNVAADG 216
            FLSITGE   AEVRGG QTRMF V   G LTLT LKLSGGS   SGGAI+S  A + L+SC F GN A  G
Sbjct:   80 FLSITGEDDSAEVRGGGQTRMFYVSTLGGLTLTDLKLSGGS-AASGGAIHSSMATVALNSCVFDGNFATAG 149          
BLAST of mRNA_L-digitata_M_contig100709.3.2 vs. uniprot
Match: A0A6H5JB86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB86_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.680e-13
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    4 FLSITGESTLAEVRGGYQTRMFEVFPGGKLTLTQLKLSGGSFEGSGGAIYSHSAALVLDSCTFQGNVAADG 216
            FLSITGE   AEV GG QT+MF +   G LTLT LKLSGGS   SGGA+Y+ +A++ L+SC F GN A  G
Sbjct:   93 FLSITGEGDSAEVLGGGQTQMFYISSSGGLTLTDLKLSGGS-AASGGAVYASAASVALNSCVFDGNFATAG 162          
BLAST of mRNA_L-digitata_M_contig100709.3.2 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 4.780e-12
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    4 FLSITGESTLAEVRGGYQTRMFEVFPGGKLTLTQLKLSGGSFEGSGGAIYSHSAALVLDSCTFQGNVAADG 216
            FLSITGE   AEV GG QT+MF V   G LTLT L+LSGGS   SGGA+Y+ +A++ L++C F GN A  G
Sbjct:   93 FLSITGEDDSAEVLGGGQTQMFYVSSSGGLTLTDLRLSGGS-AASGGAVYASAASVALNNCVFDGNFATAG 162          
BLAST of mRNA_L-digitata_M_contig100709.3.2 vs. uniprot
Match: UPI001CC949D1 (hypothetical protein n=1 Tax=Methanobrevibacter sp. TMH8 TaxID=2848611 RepID=UPI001CC949D1)

HSP 1 Score: 53.9 bits (128), Expect = 5.200e-5
Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 1
Query:  130 EGSGGAIYSHSAAL--VLDSCTFQGNVAADGDGGAVWAERGNITIIRGEFLDNNASVYGGAVAAAG-VSSLVVQGGDTSFTSNIATGANEELSLLDDLSEGVDGGGAVAFLFASANIADSVFDGNNAQFSGGAL 522
            E  GGAI++  + +  ++DSC+F  N A  G GG++    GN+ I+R +F++N A++ GGAVA++G  SS +    D+SF+SN A      L+++                  + NI +  F  N A  SG A+
Sbjct:  227 ENGGGAIFNDYSKIPIIIDSCSFINNFA--GVGGSI-TSNGNLNILRSKFINNTATMGGGAVASSGGESSYICNIYDSSFSSNSAPIGGAILNMV------------------TMNIFNCNFTNNKANESGAAI 339          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100709.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FRH0_ECTSI1.040e-2838.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JS31_9PHAE2.730e-2236.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH4_ECTSI2.350e-1965.43Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRH3_ECTSI3.080e-1364.79Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JB86_9PHAE5.680e-1359.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRG6_ECTSI4.780e-1257.75Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
UPI001CC949D15.200e-532.84hypothetical protein n=1 Tax=Methanobrevibacter sp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100709contigL-digitata_M_contig100709:42..758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1125725.HMPREF1325_0695
PFAMsLRR_5
Model size615
Max annot lvl203691|Spirochaetes
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.33e-05
EggNOG OGsCOG2931@1|root,COG3210@1|root,COG2931@2|Bacteria,COG3210@2|Bacteria,2J6UD@203691|Spirochaetes
DescriptionParallel beta-helix repeats
Cds size615
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406609.6960635-CDS-L-digitata_M_contig100709:41..3091682406609.6960635-CDS-L-digitata_M_contig100709:41..309Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100709 42..309 -
1682406609.7061694-CDS-L-digitata_M_contig100709:411..7581682406609.7061694-CDS-L-digitata_M_contig100709:411..758Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100709 412..758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100709.3.2prot_L-digitata_M_contig100709.3.2Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100709 42..758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100709.3.2

>prot_L-digitata_M_contig100709.3.2 ID=prot_L-digitata_M_contig100709.3.2|Name=mRNA_L-digitata_M_contig100709.3.2|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=205bp
MFLSITGESTLAEVRGGYQTRMFEVFPGGKLTLTQLKLSGGSFEGSGGAI
YSHSAALVLDSCTFQGNVAADGDGGAVWAERGNITIIRGEFLDNNASVYG
GAVAAAGVSSLVVQGGDTSFTSNIATGANEELSLLDDLSEGVDGGGAVAF
LFASANIADSVFDGNNAQFSGGALLGGNGTYITVDGCKFENNTAMEHGGA
IAAAS
back to top

mRNA from alignment at L-digitata_M_contig100709:42..758-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100709.3.2 ID=mRNA_L-digitata_M_contig100709.3.2|Name=mRNA_L-digitata_M_contig100709.3.2|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=717bp|location=Sequence derived from alignment at L-digitata_M_contig100709:42..758- (Laminaria digitata LdigPH10_18mv male)
ATGTTCCTATCCATTACGGGCGAGAGTACTCTGGCCGAGGTTCGAGGCGG CTACCAGACCAGGATGTTCGAAGTTTTCCCAGGCGGCAAGCTGACCTTGA CACAGCTCAAGCTGTCGGGAGGTTCTTTTGAGGGAAGTGGCGGCGCAATC TATTCACATTCAGCAGCCTTGGTTCTCGACAGTTGCACATTTCAAGGCAA TGTCGCCGCAGACGGGGATGGCGGTGCGGTGTGGGCAGAAAGAGGAAACA TCACGATAATAAGGGGAGAGTTCTTGGACAACAACGCGAGTGTGTACGGA GGTGCTGTGGCTGCAGCGGGCGTTAGTAGCTTGGTGGTCCAAGGGGGGTC GGTATTCGAGGGCAACCAGGCGCTCGTAGGTGGTGCGCTGCATTGCAGTG GAGTGCCCGTGTCCGGATTGGCGAGCTCGGCGACTTCGTGCTCCCTCAGC GACACCTCGTTTACGTCAAACATTGCTACCGGCGCGAATGAGGAGCTATC ACTACTTGATGATCTGTCCGAAGGAGTCGATGGCGGTGGAGCCGTCGCAT TCCTGTTTGCCAGTGCCAATATTGCAGATTCCGTGTTCGACGGCAACAAC GCGCAATTTTCGGGTGGGGCTCTGCTCGGAGGAAATGGCACATACATCAC GGTCGACGGGTGCAAGTTTGAGAACAACACCGCGATGGAGCATGGGGGCG CGATTGCAGCTGCTTCG
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig100709:42..758-

>mRNA_L-digitata_M_contig100709.3.2 ID=mRNA_L-digitata_M_contig100709.3.2|Name=mRNA_L-digitata_M_contig100709.3.2|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=615bp|location=Sequence derived from alignment at L-digitata_M_contig100709:42..758- (Laminaria digitata LdigPH10_18mv male)
ATGTTCCTATCCATTACGGGCGAGAGTACTCTGGCCGAGGTTCGAGGCGG
CTACCAGACCAGGATGTTCGAAGTTTTCCCAGGCGGCAAGCTGACCTTGA
CACAGCTCAAGCTGTCGGGAGGTTCTTTTGAGGGAAGTGGCGGCGCAATC
TATTCACATTCAGCAGCCTTGGTTCTCGACAGTTGCACATTTCAAGGCAA
TGTCGCCGCAGACGGGGATGGCGGTGCGGTGTGGGCAGAAAGAGGAAACA
TCACGATAATAAGGGGAGAGTTCTTGGACAACAACGCGAGTGTGTACGGA
GGTGCTGTGGCTGCAGCGGGCGTTAGTAGCTTGGTGGTCCAAGGGGGCGA
CACCTCGTTTACGTCAAACATTGCTACCGGCGCGAATGAGGAGCTATCAC
TACTTGATGATCTGTCCGAAGGAGTCGATGGCGGTGGAGCCGTCGCATTC
CTGTTTGCCAGTGCCAATATTGCAGATTCCGTGTTCGACGGCAACAACGC
GCAATTTTCGGGTGGGGCTCTGCTCGGAGGAAATGGCACATACATCACGG
TCGACGGGTGCAAGTTTGAGAACAACACCGCGATGGAGCATGGGGGCGCG
ATTGCAGCTGCTTCG
back to top