mRNA_L-digitata_M_contig100705.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100705.3.1
Unique NamemRNA_L-digitata_M_contig100705.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100705.3.1 vs. uniprot
Match: A0A2E8XSQ5_9PROT (Bcr/CflA family efflux transporter n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XSQ5_9PROT)

HSP 1 Score: 72.0 bits (175), Expect = 1.720e-13
Identity = 39/49 (79.59%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    4 ILRKPPKIPLLTVLISSSAIAYNLFLPSMPDIGLVFGVSIFTVQSTLIA 150
            I R+PP IPLLT LIS SAIAYNLFLPSMPDIG  FGVS  TVQS LIA
Sbjct:   13 IFRRPPTIPLLTALISGSAIAYNLFLPSMPDIGRAFGVSTLTVQSALIA 61
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BLAST of mRNA_L-digitata_M_contig100705.3.1 vs. uniprot
Match: A0A2E7PJZ4_9PROT (Bcr/CflA family efflux transporter n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7PJZ4_9PROT)

HSP 1 Score: 61.2 bits (147), Expect = 1.140e-9
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   10 RKPPKIPLLTVLISSSAIAYNLFLPSMPDIGLVFGVSIFTVQSTLIA 150
            R+PP I LLTVLISSSAIAYNLFLPS+PDIG  F V   +VQ +LIA
Sbjct:    3 RRPPTISLLTVLISSSAIAYNLFLPSIPDIGRAFDVPSTSVQGSLIA 49
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BLAST of mRNA_L-digitata_M_contig100705.3.1 vs. uniprot
Match: A0A848W9J2_9PROT (Bcr/CflA family efflux transporter n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W9J2_9PROT)

HSP 1 Score: 61.2 bits (147), Expect = 1.140e-9
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   10 RKPPKIPLLTVLISSSAIAYNLFLPSMPDIGLVFGVSIFTVQSTLI 147
            R  PKIPLLT LIS SAIAYN+FLPSMPDI   FG + F VQ+TLI
Sbjct:    3 RSAPKIPLLTALISGSAIAYNVFLPSMPDIARDFGATNFAVQTTLI 48
[Close]
BLAST of mRNA_L-digitata_M_contig100705.3.1 vs. uniprot
Match: A0A2E3XEG2_9PROT (Bcr/CflA family efflux transporter n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E3XEG2_9PROT)

HSP 1 Score: 53.5 bits (127), Expect = 6.050e-7
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   34 LTVLISSSAIAYNLFLPSMPDIGLVFGVSIFTVQSTLI 147
            +T LIS SAIAYN+FLPSMPDI   F VS+F+VQSTLI
Sbjct:    1 MTALISCSAIAYNIFLPSMPDIAQYFEVSVFSVQSTLI 38
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100705.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E8XSQ5_9PROT1.720e-1379.59Bcr/CflA family efflux transporter n=1 Tax=Alphapr... [more]
A0A2E7PJZ4_9PROT1.140e-972.34Bcr/CflA family efflux transporter n=2 Tax=Alphapr... [more]
A0A848W9J2_9PROT1.140e-971.74Bcr/CflA family efflux transporter n=1 Tax=Alphapr... [more]
A0A2E3XEG2_9PROT6.050e-773.68Bcr/CflA family efflux transporter n=1 Tax=Rhodosp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100705contigL-digitata_M_contig100705:788..937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size150
Hectar predicted targeting categorysignal peptide
Exons1
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406609.667327-CDS-L-digitata_M_contig100705:787..9371682406609.667327-CDS-L-digitata_M_contig100705:787..937Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100705 788..937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100705.3.1prot_L-digitata_M_contig100705.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100705 788..937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100705.3.1

>prot_L-digitata_M_contig100705.3.1 ID=prot_L-digitata_M_contig100705.3.1|Name=mRNA_L-digitata_M_contig100705.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=50bp
LILRKPPKIPLLTVLISSSAIAYNLFLPSMPDIGLVFGVSIFTVQSTLIA
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mRNA from alignment at L-digitata_M_contig100705:788..937+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100705.3.1 ID=mRNA_L-digitata_M_contig100705.3.1|Name=mRNA_L-digitata_M_contig100705.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=150bp|location=Sequence derived from alignment at L-digitata_M_contig100705:788..937+ (Laminaria digitata LdigPH10_18mv male)
CTCATTCTTCGCAAACCGCCAAAAATTCCGCTGCTCACCGTACTCATTTC
GAGCAGCGCAATTGCGTACAATCTGTTTCTGCCATCCATGCCGGATATCG
GGCTGGTGTTCGGCGTGTCGATTTTCACCGTACAATCCACGTTGATTGCA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100705:788..937+

>mRNA_L-digitata_M_contig100705.3.1 ID=mRNA_L-digitata_M_contig100705.3.1|Name=mRNA_L-digitata_M_contig100705.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=150bp|location=Sequence derived from alignment at L-digitata_M_contig100705:788..937+ (Laminaria digitata LdigPH10_18mv male)
CTCATTCTTCGCAAACCGCCAAAAATTCCGCTGCTCACCGTACTCATTTC
GAGCAGCGCAATTGCGTACAATCTGTTTCTGCCATCCATGCCGGATATCG
GGCTGGTGTTCGGCGTGTCGATTTTCACCGTACAATCCACGTTGATTGCA
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