mRNA_L-digitata_M_contig100705.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100705.2.1
Unique NamemRNA_L-digitata_M_contig100705.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100705.2.1 vs. uniprot
Match: A0A2E8XQ33_9PROT (DUF4174 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XQ33_9PROT)

HSP 1 Score: 125 bits (315), Expect = 1.150e-33
Identity = 60/116 (51.72%), Postives = 85/116 (73.28%), Query Frame = 1
Query:   13 MDAYPWNKRPVIVAAPHANASLVQAQRKILSAQKHALQARDMVWIEILGDQVTIDGKAMPDIAASQIRDRYGIRKGEALALLVGKDGGVKMKSSTAISAHELFETIDAMPMRRREM 360
            MD++ W+ RP++V AP     LV AQR++L  Q +A + RDM+ +E++GD+V+I+G+    + A  +R RY +  GEA ALLVGKDGGVK++S +A SA ELF TIDAMPMR+RE+
Sbjct:  106 MDSFRWHNRPLVVFAPAPRNPLVAAQREVLDRQGYAFRERDMILVEVIGDRVSINGRVTRGLDADAMRARYRVEAGEACALLVGKDGGVKLRSESAFSADELFGTIDAMPMRQREV 221          
BLAST of mRNA_L-digitata_M_contig100705.2.1 vs. uniprot
Match: A0A2E4XVZ9_9PROT (DUF4174 domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4XVZ9_9PROT)

HSP 1 Score: 108 bits (271), Expect = 2.050e-27
Identity = 52/119 (43.70%), Postives = 77/119 (64.71%), Query Frame = 1
Query:   13 MDAYPWNKRPVIVAAPHANASLVQAQRKILSAQKHALQARDMVWIEILGDQVTIDGKAMPDIAASQIRDRYGIRKGEALALLVGKDGGVKMKSSTAISAHELFETIDAMPMRRREMNTG 369
            M+AY W  RP+++  P A   L+ +QR+ L+ +   L+ RDMV IE++G+++T+DG   P + A  +R R   +      +L+GKDGGVK++    ISA  LF+TIDAMPMRR+EM  G
Sbjct:   72 MNAYLWQNRPLVILVPDAQDDLLVSQREALAGRAADLKDRDMVIIEVIGNKLTVDGATAPKLTAEHLRRRLNAQAHLTETILIGKDGGVKLRRPAPISAGTLFQTIDAMPMRRQEMGRG 190          
BLAST of mRNA_L-digitata_M_contig100705.2.1 vs. uniprot
Match: A0A7X0H4N1_9BACT (DUF4174 domain-containing protein n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0H4N1_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 4.240e-23
Identity = 52/122 (42.62%), Postives = 77/122 (63.11%), Query Frame = 1
Query:   13 MDAYPWNKRPVIVAAPHANASLVQAQRKILSAQKHALQARDMVWIEILGDQVTIDGKAMPDIAASQ-IRDRYGIRKGEALA-LLVGKDGGVKMKSSTAISAHELFETIDAMPMRRREMNTGN 372
            MD + W+ RP++V A       +  QR++L+A +  L  RDMV IE++GD +T+DG+  P  A +  +R RYG+    A A LLVGKD GVK++S   ++A  +F  ID+MPMRR+EM   +
Sbjct:    1 MDEFAWSHRPLLVFATSVEEPALLEQRELLAAHREGLNERDMVVIELVGDDLTVDGQ--PRTADTHALRKRYGVPTSRAFAVLLVGKDTGVKLRSDRPVTAEGVFGLIDSMPMRRQEMREAS 120          
BLAST of mRNA_L-digitata_M_contig100705.2.1 vs. uniprot
Match: UPI0019065B8D (DUF4174 domain-containing protein n=1 Tax=Rhodovibrio sodomensis TaxID=1088 RepID=UPI0019065B8D)

HSP 1 Score: 95.5 bits (236), Expect = 1.250e-22
Identity = 49/117 (41.88%), Postives = 71/117 (60.68%), Query Frame = 1
Query:   13 MDAYPWNKRPVIVAAPHANASLVQAQRKILSAQKHALQARDMVWIEILGDQ-VTIDGKAMPDIAASQIRDRYGIRKGEALALLVGKDGGVKMKSSTAISAHELFETIDAMPMRRREM 360
            M  + W  RP+++ AP A    ++ Q +I +      + RDMV I + GD+ VT+DG    D+A + +R RY + +    A+LVGKDG  K++    I A +LF+TIDAMPMRRREM
Sbjct:   25 MQRFQWQNRPLLIFAPAAGGPALRRQLEIAATHAEGWRDRDMVTIVVAGDRPVTVDGTRAKDLANAALRQRYDVPEDRFAAILVGKDGTQKLRRDGLIPASKLFQTIDAMPMRRREM 141          
BLAST of mRNA_L-digitata_M_contig100705.2.1 vs. uniprot
Match: A0A0D3LH44_9BACT (DUF4174 domain-containing protein n=1 Tax=Flammeovirgaceae bacterium 311 TaxID=1257021 RepID=A0A0D3LH44_9BACT)

HSP 1 Score: 94.4 bits (233), Expect = 2.130e-22
Identity = 48/119 (40.34%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    7 PLMDAYPWNKRPVIVAAPHANASLVQAQRKILSAQKHALQARDMVWIEILGDQVTI-DGKAMPDIAASQIRDRYGIRKGEALALLVGKDGGVKMKSSTAISAHELFETIDAMPMRRREM 360
            PL+D Y W  R +++ AP       + Q + L  Q+  LQ RD++   I GD++ + DGK +    A  +R  Y I   E   LL+GKDGG K++S   ++   LF+TIDAMPMRR+EM
Sbjct:    7 PLLDQYQWKNRLLLLYAPDEEDESYRNQSRELQKQERGLQQRDLLTFHIFGDKIVLPDGKILGQTDARDLRQHYVIPPKETAILLIGKDGGEKLRSRDLLTTERLFQTIDAMPMRRQEM 125          
BLAST of mRNA_L-digitata_M_contig100705.2.1 vs. uniprot
Match: A0A1G7TQT1_9HYPH (DUF4174 domain-containing protein n=1 Tax=Limimonas halophila TaxID=1082479 RepID=A0A1G7TQT1_9HYPH)

HSP 1 Score: 94.4 bits (233), Expect = 3.180e-22
Identity = 50/117 (42.74%), Postives = 70/117 (59.83%), Query Frame = 1
Query:   13 MDAYPWNKRPVIVAAPHANASLVQAQRKILSAQKHALQARDMVWIEILGD-QVTIDGKAMPDIAASQIRDRYGIRKGEALALLVGKDGGVKMKSSTAISAHELFETIDAMPMRRREM 360
            M+ + W  RP++V AP A+   +  QR I  A     + RDMV + + GD  V +DG+   D+  + +R R+G+      ALLVGKDG VK+    +I+A  LF TIDAMPMR+REM
Sbjct:   22 MERFTWANRPLVVLAPDADHPALGEQRAIAEAHAAGFRERDMVVVTLAGDGPVRVDGEPARDVDPAALRARFGVAHDAFRALLVGKDGTVKLSRGESIAADTLFRTIDAMPMRQREM 138          
BLAST of mRNA_L-digitata_M_contig100705.2.1 vs. uniprot
Match: A0A369TEG6_9PROT (DUF4174 domain-containing protein n=2 Tax=Ferruginivarius sediminum TaxID=2661937 RepID=A0A369TEG6_9PROT)

HSP 1 Score: 92.4 bits (228), Expect = 2.870e-21
Identity = 47/117 (40.17%), Postives = 72/117 (61.54%), Query Frame = 1
Query:   13 MDAYPWNKRPVIVAAPHANASLVQAQRKILSAQKHALQARDMVWIEILGDQ-VTIDGKAMPDIAASQIRDRYGIRKGEALALLVGKDGGVKMKSSTAISAHELFETIDAMPMRRREM 360
            M+ + W KRP+++  P A+ +    Q ++++        RDMV I ++GD+ V +DG+   D+    IR R  + +     +LVGKDG VK +S+ AI A+ LF+TIDAMPMR+REM
Sbjct:   36 MERFLWEKRPLVMTVPRADNAAYGQQLEVVANHAEGFAERDMVVIAVVGDERVEVDGRLAADLNGGDIRRRLNLPQTRFEVVLVGKDGAVKRRSTQAIPANVLFQTIDAMPMRQREM 152          
BLAST of mRNA_L-digitata_M_contig100705.2.1 vs. uniprot
Match: A0A3C0NB67_9CYAN (DUF4174 domain-containing protein n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A3C0NB67_9CYAN)

HSP 1 Score: 89.4 bits (220), Expect = 2.350e-20
Identity = 45/119 (37.82%), Postives = 74/119 (62.18%), Query Frame = 1
Query:   13 MDAYPWNKRPVIVAAPHANASLVQAQRKILSAQKHALQARDMVWIEILGDQVT-IDGKAMPDIAASQIRDRYGIRKGEALALLVGKDGGVKMKSSTAISAHELFETIDAMPMRRREMNT 366
            +DAY WN R ++V AP+ ++S  Q Q +    ++  L  RD++  E+L   ++ I+G+++    A+Q+R R+ +   E   +LVGKDG  K +  T +S   +F+ IDAMPMRR+EMN+
Sbjct:   15 LDAYKWNNRLLLVFAPNEDSSAYQQQMQRFQGKQAQLSDRDLLVFELLAQGISRINGQSITPKEAAQVRKRFNVGSQEFRVILVGKDGTAKRRDRTPVSPEVIFKEIDAMPMRRQEMNS 133          
BLAST of mRNA_L-digitata_M_contig100705.2.1 vs. uniprot
Match: A0A1Z4GC02_9CYAN (DUF4174 domain-containing protein n=2 Tax=Nostocales TaxID=1161 RepID=A0A1Z4GC02_9CYAN)

HSP 1 Score: 89.0 bits (219), Expect = 6.780e-20
Identity = 42/112 (37.50%), Postives = 71/112 (63.39%), Query Frame = 1
Query:   28 WNKRPVIVAAPHANASLVQAQRKILSAQKHALQARDMVWIEILG-DQVTIDGKAMPDIAASQIRDRYGIRKGEALALLVGKDGGVKMKSSTAISAHELFETIDAMPMRRREM 360
            W  R ++V AP  N    Q Q ++ +  ++  + RD+V +++L  D+   +G+ + + + + +RDR+G+ K     +LVGKDGGVK + +T + A E+FE IDAMPMR++EM
Sbjct:   47 WQNRVLLVFAPSVNNRTYQQQMQLFNQHQNGFKDRDLVLVQVLATDKSYANGQLIDESSVANLRDRFGVDKDNFRVILVGKDGGVKRQDTTPVPATEIFEQIDAMPMRQQEM 158          
BLAST of mRNA_L-digitata_M_contig100705.2.1 vs. uniprot
Match: UPI001609668A (DUF4174 domain-containing protein n=1 Tax=Sphingomonas sp. BK580 TaxID=2586972 RepID=UPI001609668A)

HSP 1 Score: 87.4 bits (215), Expect = 1.170e-19
Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    7 PLMDAYPWNKRPVIVAAPHANASLVQAQRKILSAQKHALQARDMVWIEILGDQVTIDGKAMPDIAASQIRDRYGIRKGEALALLVGKDGGVKMKSSTAISAHELFETIDAMPMRRRE 357
            P + A  W KR +++AAP     L+Q QR+I+     A   RD+  +EI+G+ VT       D +AS +R+R+ + +    ALL+GKDGG K++ +  I+A +L ETIDAMPMRR+E
Sbjct:   18 PSLSAMKWEKRVLLIAAPGEQDPLLQQQRRIMRRWTAAAAERDLAVVEIVGNDVT----GASDTSAS-LRERFRLPRDGFSALLIGKDGGTKLRRTHPIAAADLEETIDAMPMRRQE 129          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100705.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8XQ33_9PROT1.150e-3351.72DUF4174 domain-containing protein n=1 Tax=Alphapro... [more]
A0A2E4XVZ9_9PROT2.050e-2743.70DUF4174 domain-containing protein n=1 Tax=Rhodospi... [more]
A0A7X0H4N1_9BACT4.240e-2342.62DUF4174 domain-containing protein n=1 Tax=Algispha... [more]
UPI0019065B8D1.250e-2241.88DUF4174 domain-containing protein n=1 Tax=Rhodovib... [more]
A0A0D3LH44_9BACT2.130e-2240.34DUF4174 domain-containing protein n=1 Tax=Flammeov... [more]
A0A1G7TQT1_9HYPH3.180e-2242.74DUF4174 domain-containing protein n=1 Tax=Limimona... [more]
A0A369TEG6_9PROT2.870e-2140.17DUF4174 domain-containing protein n=2 Tax=Ferrugin... [more]
A0A3C0NB67_9CYAN2.350e-2037.82DUF4174 domain-containing protein n=2 Tax=unclassi... [more]
A0A1Z4GC02_9CYAN6.780e-2037.50DUF4174 domain-containing protein n=2 Tax=Nostocal... [more]
UPI001609668A1.170e-1941.88DUF4174 domain-containing protein n=1 Tax=Sphingom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100705contigL-digitata_M_contig100705:329..703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog240292.Ava_3997
PFAMsDUF4174
Model size375
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.6e-18
EggNOG OGs2DRCR@1|root,33B8F@2|Bacteria,1G8D0@1117|Cyanobacteria,1HSQA@1161|Nostocales
DescriptionDomain of unknown function (DUF4174)
Cds size363
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406609.6271796-UTR-L-digitata_M_contig100705:328..3401682406609.6271796-UTR-L-digitata_M_contig100705:328..340Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100705 329..340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406609.6386733-CDS-L-digitata_M_contig100705:340..7031682406609.6386733-CDS-L-digitata_M_contig100705:340..703Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100705 341..703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100705.2.1prot_L-digitata_M_contig100705.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100705 341..703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100705.2.1

>prot_L-digitata_M_contig100705.2.1 ID=prot_L-digitata_M_contig100705.2.1|Name=mRNA_L-digitata_M_contig100705.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=121bp
MDAYPWNKRPVIVAAPHANASLVQAQRKILSAQKHALQARDMVWIEILGD
QVTIDGKAMPDIAASQIRDRYGIRKGEALALLVGKDGGVKMKSSTAISAH
ELFETIDAMPMRRREMNTGN*
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mRNA from alignment at L-digitata_M_contig100705:329..703+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100705.2.1 ID=mRNA_L-digitata_M_contig100705.2.1|Name=mRNA_L-digitata_M_contig100705.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=375bp|location=Sequence derived from alignment at L-digitata_M_contig100705:329..703+ (Laminaria digitata LdigPH10_18mv male)
CCAGAACCTCTCATGGACGCATACCCATGGAATAAACGCCCCGTGATTGT CGCGGCACCGCACGCCAATGCATCGCTCGTGCAGGCACAACGCAAAATCC TGTCTGCACAAAAACACGCCCTGCAGGCGCGCGACATGGTGTGGATCGAG ATCTTGGGAGATCAGGTCACAATTGATGGCAAGGCGATGCCGGACATAGC CGCATCGCAGATCCGGGATAGATACGGGATCAGGAAAGGGGAAGCACTTG CCCTTCTTGTCGGCAAGGACGGGGGCGTGAAGATGAAAAGCTCAACGGCG ATCTCCGCCCATGAGCTGTTTGAAACAATCGACGCCATGCCGATGCGTCG CCGGGAAATGAATACAGGAAACTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100705:329..703+

>mRNA_L-digitata_M_contig100705.2.1 ID=mRNA_L-digitata_M_contig100705.2.1|Name=mRNA_L-digitata_M_contig100705.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=363bp|location=Sequence derived from alignment at L-digitata_M_contig100705:329..703+ (Laminaria digitata LdigPH10_18mv male)
ATGGACGCATACCCATGGAATAAACGCCCCGTGATTGTCGCGGCACCGCA
CGCCAATGCATCGCTCGTGCAGGCACAACGCAAAATCCTGTCTGCACAAA
AACACGCCCTGCAGGCGCGCGACATGGTGTGGATCGAGATCTTGGGAGAT
CAGGTCACAATTGATGGCAAGGCGATGCCGGACATAGCCGCATCGCAGAT
CCGGGATAGATACGGGATCAGGAAAGGGGAAGCACTTGCCCTTCTTGTCG
GCAAGGACGGGGGCGTGAAGATGAAAAGCTCAACGGCGATCTCCGCCCAT
GAGCTGTTTGAAACAATCGACGCCATGCCGATGCGTCGCCGGGAAATGAA
TACAGGAAACTAG
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