mRNA_L-digitata_M_contig100705.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100705.1.1
Unique NamemRNA_L-digitata_M_contig100705.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100705.1.1 vs. uniprot
Match: A0A2T9YRW0_9FUNG (Uncharacterized protein n=1 Tax=Smittium megazygosporum TaxID=133381 RepID=A0A2T9YRW0_9FUNG)

HSP 1 Score: 53.9 bits (128), Expect = 7.830e-7
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 LRAAKQGVGRAQNKLGRLYELGHGVEVDLDIATYWYEESARSGNANARKNLARL 162
            LRAA QG+ RAQ  +G  Y++G GVE DL  A  WYE++A SG+A A++ L ++
Sbjct:  712 LRAANQGLPRAQFGMGYYYDIGIGVERDLQKAIEWYEKAAASGSAEAKERLQKV 765
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BLAST of mRNA_L-digitata_M_contig100705.1.1 vs. uniprot
Match: A0A1S9CNS2_9FIRM (Uncharacterized protein n=1 Tax=Epulopiscium sp. Nele67-Bin004 TaxID=1764962 RepID=A0A1S9CNS2_9FIRM)

HSP 1 Score: 50.4 bits (119), Expect = 6.340e-6
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   10 AKQGVGRAQNKLGRLYELGHGVEVDLDIATYWYEESARSGNANARKNLARL 162
            A+QG   AQN +G+ YELG GVE DLDIA  WY++SA  G    + N+ R+
Sbjct:  126 AEQGDVEAQNHIGKSYELGLGVEKDLDIAMKWYKKSASQGYKWGQWNVDRI 176
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BLAST of mRNA_L-digitata_M_contig100705.1.1 vs. uniprot
Match: J9HSN8_9SPIT (TPR repeat protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9HSN8_9SPIT)

HSP 1 Score: 51.2 bits (121), Expect = 7.020e-6
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    4 RAAKQGVGRAQNKLGRLYELGHGVEVDLDIATYWYEESARSGNANARKNLARL 162
            +A+++G  RA N L   YELGHGVEVD DIA   Y ES + G   A  NL +L
Sbjct:  487 KASERGYARALNNLAICYELGHGVEVDTDIALQLYSESRKKGYTPAILNLGQL 539
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BLAST of mRNA_L-digitata_M_contig100705.1.1 vs. uniprot
Match: UPI0010BE0158 (PEGA domain-containing protein n=2 Tax=Vibrio breoganii TaxID=553239 RepID=UPI0010BE0158)

HSP 1 Score: 49.7 bits (117), Expect = 2.000e-5
Identity = 21/53 (39.62%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    4 RAAKQGVGRAQNKLGRLYELGHGVEVDLDIATYWYEESARSGNANARKNLARL 162
            ++A++G   A   LGR+Y+LG GV+ D+D+A  W + +A+SGN  A+  L ++
Sbjct:  185 KSAEKGNSDAMYNLGRMYQLGRGVDRDMDLALQWMKRAAKSGNLKAKDRLQKM 237
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BLAST of mRNA_L-digitata_M_contig100705.1.1 vs. uniprot
Match: A0A015J6Y8_RHIIW (Cdc15p n=3 Tax=Rhizophagus TaxID=1129544 RepID=A0A015J6Y8_RHIIW)

HSP 1 Score: 49.3 bits (116), Expect = 3.350e-5
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   31 AQNKLGRLYELGHGVEVDLDIATYWYEESARSGNANARKNLARL 162
            AQ  L  +YE G G+E D+++A YWY++SA  GN  A+ NL +L
Sbjct:  615 AQYNLALMYENGDGIERDINLANYWYKQSAGQGNQKAQNNLKKL 658
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BLAST of mRNA_L-digitata_M_contig100705.1.1 vs. uniprot
Match: UPI0003168625 (sel1 repeat family protein n=1 Tax=Vibrio breoganii TaxID=553239 RepID=UPI0003168625)

HSP 1 Score: 48.1 bits (113), Expect = 7.230e-5
Identity = 20/56 (35.71%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    4 RAAKQGVGRAQNKLGRLYELGHGVEVDLDIATYWYEESARSGNANARKNLARLSSN 171
            ++A+ G   A   LGR+Y+LG G++ D+D+A  W  ++A+ GN  A+  L +++ N
Sbjct:  185 KSAENGNSNAMYNLGRMYQLGRGIDRDIDLAIQWMRKAAKLGNEKAKDRLQKMNLN 240
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100705.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2T9YRW0_9FUNG7.830e-750.00Uncharacterized protein n=1 Tax=Smittium megazygos... [more]
A0A1S9CNS2_9FIRM6.340e-650.98Uncharacterized protein n=1 Tax=Epulopiscium sp. N... [more]
J9HSN8_9SPIT7.020e-650.94TPR repeat protein n=1 Tax=Oxytricha trifallax Tax... [more]
UPI0010BE01582.000e-539.62PEGA domain-containing protein n=2 Tax=Vibrio breo... [more]
A0A015J6Y8_RHIIW3.350e-547.73Cdc15p n=3 Tax=Rhizophagus TaxID=1129544 RepID=A0A... [more]
UPI00031686257.230e-535.71sel1 repeat family protein n=1 Tax=Vibrio breogani... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100705contigL-digitata_M_contig100705:6..194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog44056.XP_009038949.1
PFAMsSel1
Model size189
Max annot lvl2759|Eukaryota
KEGG koko:K07126,ko:K14026
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.62e-08
EggNOG OGsCOG0790@1|root,KOG1550@2759|Eukaryota
DescriptionERAD pathway
Cds size189
COG categoryT
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406609.5728245-CDS-L-digitata_M_contig100705:5..1941682406609.5728245-CDS-L-digitata_M_contig100705:5..194Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100705 6..194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100705.1.1prot_L-digitata_M_contig100705.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100705 6..194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100705.1.1

>prot_L-digitata_M_contig100705.1.1 ID=prot_L-digitata_M_contig100705.1.1|Name=mRNA_L-digitata_M_contig100705.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=63bp
LRAAKQGVGRAQNKLGRLYELGHGVEVDLDIATYWYEESARSGNANARKN
LARLSSNTTTNE*
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mRNA from alignment at L-digitata_M_contig100705:6..194+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100705.1.1 ID=mRNA_L-digitata_M_contig100705.1.1|Name=mRNA_L-digitata_M_contig100705.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=189bp|location=Sequence derived from alignment at L-digitata_M_contig100705:6..194+ (Laminaria digitata LdigPH10_18mv male)
CTGCGCGCGGCCAAGCAAGGTGTGGGCAGGGCACAGAATAAGCTGGGGCG
GCTTTACGAGTTGGGACATGGCGTCGAGGTCGACCTTGATATCGCCACCT
ATTGGTACGAGGAGAGTGCGCGAAGCGGTAACGCCAATGCGCGTAAAAAT
CTCGCGCGCCTGTCCAGCAACACCACGACCAACGAGTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100705:6..194+

>mRNA_L-digitata_M_contig100705.1.1 ID=mRNA_L-digitata_M_contig100705.1.1|Name=mRNA_L-digitata_M_contig100705.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=189bp|location=Sequence derived from alignment at L-digitata_M_contig100705:6..194+ (Laminaria digitata LdigPH10_18mv male)
CTGCGCGCGGCCAAGCAAGGTGTGGGCAGGGCACAGAATAAGCTGGGGCG
GCTTTACGAGTTGGGACATGGCGTCGAGGTCGACCTTGATATCGCCACCT
ATTGGTACGAGGAGAGTGCGCGAAGCGGTAACGCCAATGCGCGTAAAAAT
CTCGCGCGCCTGTCCAGCAACACCACGACCAACGAGTAA
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