mRNA_L-digitata_M_contig100689.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100689.1.1
Unique NamemRNA_L-digitata_M_contig100689.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100689.1.1 vs. uniprot
Match: A0A8H3LT90_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3LT90_9GLOM)

HSP 1 Score: 60.8 bits (146), Expect = 5.990e-10
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   40 FPNLYRLVKIYIVQPHSSVECERGSSAQNRIKSKTRNGLSVEGLELLMRLSL 195
            FPN+ +L++I    P SSVECERG S QN+IK+K RN L+   L++LMR+SL
Sbjct:   86 FPNIIKLIQIVYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMRVSL 137
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BLAST of mRNA_L-digitata_M_contig100689.1.1 vs. uniprot
Match: UPI001C155DC1 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C155DC1)

HSP 1 Score: 60.1 bits (144), Expect = 6.850e-10
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   40 FPNLYRLVKIYIVQPHSSVECERGSSAQNRIKSKTRNGLSVEGLELLMRLSL 195
            FPN+ +L+++    P SSVECERG S QN+IK+K+RN L+ + L+ LMR+SL
Sbjct:   56 FPNIIKLIQLVYCIPFSSVECERGFSRQNQIKTKSRNSLTTDTLDRLMRISL 107
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BLAST of mRNA_L-digitata_M_contig100689.1.1 vs. uniprot
Match: A0A015J8B3_RHIIW (Uncharacterized protein n=13 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015J8B3_RHIIW)

HSP 1 Score: 57.8 bits (138), Expect = 3.700e-8
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   40 FPNLYRLVKIYIVQPHSSVECERGSSAQNRIKSKTRNGLSVEGLELLMRLSL 195
            FPN+ +L++I    P SSVECERG S QN+IK+K RN L+   L++LM +SL
Sbjct:  544 FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 595
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BLAST of mRNA_L-digitata_M_contig100689.1.1 vs. uniprot
Match: A0A3B1J4P0_ASTMX (TTF-type domain-containing protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1J4P0_ASTMX)

HSP 1 Score: 57.8 bits (138), Expect = 3.700e-8
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   40 FPNLYRLVKIYIVQPHSSVECERGSSAQNRIKSKTRNGLSVEGLELLMRLS 192
            F N++ L +I +V P S+ +CERG SAQNRIKSK RN L+V  +E L+R+S
Sbjct:  555 FQNIFHLAEIMLVLPISAAQCERGFSAQNRIKSKVRNSLNVSTVEDLVRIS 605
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BLAST of mRNA_L-digitata_M_contig100689.1.1 vs. uniprot
Match: UPI001C19C353 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C19C353)

HSP 1 Score: 57.8 bits (138), Expect = 3.740e-8
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   40 FPNLYRLVKIYIVQPHSSVECERGSSAQNRIKSKTRNGLSVEGLELLMRLSL 195
            FPN+ +L++I    P SSVECERG S QN+IK+K RN L+   L++LM +SL
Sbjct:  614 FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 665
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BLAST of mRNA_L-digitata_M_contig100689.1.1 vs. uniprot
Match: A0A1V9YF60_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YF60_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.740e-8
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   40 FPNLYRLVKIYIVQPHSSVECERGSSAQNRIKSKTRNGLSVEGLELLM 183
            +P++  L+KI +   H SV+CER  S QN IKSK+RNGLSVE LE LM
Sbjct:  136 YPSIVVLLKIALTMAHGSVDCERAISLQNLIKSKSRNGLSVEHLEELM 183
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BLAST of mRNA_L-digitata_M_contig100689.1.1 vs. uniprot
Match: UPI0011C0D78D (zinc finger protein 862-like n=1 Tax=Sparus aurata TaxID=8175 RepID=UPI0011C0D78D)

HSP 1 Score: 54.3 bits (129), Expect = 1.030e-7
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   40 FPNLYRLVKIYIVQPHSSVECERGSSAQNRIKSKTRNGLSVEGLELLMRLSL 195
            + N+  LV I +V P S+ +CERG SAQNRIK+ TR+ L+V   E LMR+SL
Sbjct:   37 YRNILELVMIMLVLPISAAQCERGFSAQNRIKTSTRSSLAVSTTEDLMRISL 88
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BLAST of mRNA_L-digitata_M_contig100689.1.1 vs. uniprot
Match: A0A2Z6RJ54_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RJ54_9GLOM)

HSP 1 Score: 55.8 bits (133), Expect = 1.260e-7
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   40 FPNLYRLVKIYIVQPHSSVECERGSSAQNRIKSKTRNGLSVEGLELLMRLSL 195
            F N+ +L+++    P SSVECERG S QN+IK+K RN L+ + L+ LMR+SL
Sbjct:  171 FLNIIKLIQLIYCIPFSSVECERGFSRQNQIKTKNRNSLTTDTLDRLMRISL 222
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BLAST of mRNA_L-digitata_M_contig100689.1.1 vs. uniprot
Match: UPI0007AD13DB (zinc finger protein 862-like n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007AD13DB)

HSP 1 Score: 53.9 bits (128), Expect = 5.270e-7
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   40 FPNLYRLVKIYIVQPHSSVECERGSSAQNRIKSKTRNGLSVEGLELLMRLSL 195
            + N+  LV+I +V P S+ +CERG SAQNRIK+ TR+ L V   E LMR+SL
Sbjct:  131 YKNILELVQIMLVLPISAAQCERGFSAQNRIKNSTRSCLGVSTTEDLMRISL 182
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BLAST of mRNA_L-digitata_M_contig100689.1.1 vs. uniprot
Match: A0A8B6EWY7_MYTGA (Nuclear pore complex protein Nup188 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EWY7_MYTGA)

HSP 1 Score: 53.5 bits (127), Expect = 5.360e-7
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   40 FPNLYRLVKIYIVQPHSSVECERGSSAQNRIKSKTRNGLSVEGLELLMRLSL 195
            FPN   L++I  + P SSVECERG S QN IK+K R  L ++ L+ LMR+SL
Sbjct:   99 FPNAISLMEISRILPVSSVECERGFSRQNIIKTKLRCSLGIDALDQLMRISL 150
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100689.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H3LT90_9GLOM5.990e-1055.77Zinc finger protein 862-like n=1 Tax=Rhizophagus c... [more]
UPI001C155DC16.850e-1053.85Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
A0A015J8B3_RHIIW3.700e-853.85Uncharacterized protein n=13 Tax=Rhizophagus irreg... [more]
A0A3B1J4P0_ASTMX3.700e-854.90TTF-type domain-containing protein n=1 Tax=Astyana... [more]
UPI001C19C3533.740e-853.85Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
A0A1V9YF60_9STRA4.740e-858.33Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
UPI0011C0D78D1.030e-753.85zinc finger protein 862-like n=1 Tax=Sparus aurata... [more]
A0A2Z6RJ54_9GLOM1.260e-751.92Zinc finger protein 862-like n=1 Tax=Rhizophagus c... [more]
UPI0007AD13DB5.270e-753.85zinc finger protein 862-like n=1 Tax=Sinocyclochei... [more]
A0A8B6EWY7_MYTGA5.360e-753.85Nuclear pore complex protein Nup188 n=1 Tax=Mytilu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100689contigL-digitata_M_contig100689:723..917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7739.XP_002595312.1
Preferred nameNUP188
PFAMsNup188
Model size195
Max annot lvl33208|Metazoa
KEGG koko:K14311
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0001667,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006996,GO:0006997,GO:0006999,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0010631,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016032,GO:0016043,GO:0016477,GO:0017038,GO:0017056,GO:0031503,GO:0031967,GO:0031975,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0040011,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044611,GO:0045184,GO:0046907,GO:0048870,GO:0050657,GO:0050658,GO:0051028,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0090130,GO:0090132,GO:0090521
Exons1
Evalue1.29e-09
EggNOG OGsKOG4833@1|root,KOG4833@2759|Eukaryota,38ETV@33154|Opisthokonta,3BES7@33208|Metazoa,3CZUR@33213|Bilateria,483SU@7711|Chordata
DescriptionNucleoporin NUP188 homolog
Cds size195
COG categoryQ
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406609.277392-CDS-L-digitata_M_contig100689:722..9171682406609.277392-CDS-L-digitata_M_contig100689:722..917Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100689 723..917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100689.1.1prot_L-digitata_M_contig100689.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100689 723..917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100689.1.1

>prot_L-digitata_M_contig100689.1.1 ID=prot_L-digitata_M_contig100689.1.1|Name=mRNA_L-digitata_M_contig100689.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=65bp
FWSAVKTSRGGAYFPNLYRLVKIYIVQPHSSVECERGSSAQNRIKSKTRN
GLSVEGLELLMRLSL
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mRNA from alignment at L-digitata_M_contig100689:723..917+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100689.1.1 ID=mRNA_L-digitata_M_contig100689.1.1|Name=mRNA_L-digitata_M_contig100689.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=195bp|location=Sequence derived from alignment at L-digitata_M_contig100689:723..917+ (Laminaria digitata LdigPH10_18mv male)
TTTTGGAGCGCGGTTAAGACTTCGCGCGGAGGCGCTTACTTTCCCAACCT
CTACAGGCTTGTCAAGATCTACATTGTGCAGCCGCACTCGTCTGTCGAGT
GCGAGCGCGGCTCCTCAGCCCAAAACCGGATCAAATCGAAGACCCGTAAC
GGCCTTTCGGTGGAAGGGCTTGAGCTCTTGATGCGGCTCTCACTG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100689:723..917+

>mRNA_L-digitata_M_contig100689.1.1 ID=mRNA_L-digitata_M_contig100689.1.1|Name=mRNA_L-digitata_M_contig100689.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=195bp|location=Sequence derived from alignment at L-digitata_M_contig100689:723..917+ (Laminaria digitata LdigPH10_18mv male)
TTTTGGAGCGCGGTTAAGACTTCGCGCGGAGGCGCTTACTTTCCCAACCT
CTACAGGCTTGTCAAGATCTACATTGTGCAGCCGCACTCGTCTGTCGAGT
GCGAGCGCGGCTCCTCAGCCCAAAACCGGATCAAATCGAAGACCCGTAAC
GGCCTTTCGGTGGAAGGGCTTGAGCTCTTGATGCGGCTCTCACTG
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