mRNA_L-digitata_M_contig100688.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100688.1.1
Unique NamemRNA_L-digitata_M_contig100688.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100688.1.1 vs. uniprot
Match: A0A6H5L6Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z1_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.260e-15
Identity = 33/50 (66.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 VKKLIVELYAGTTKVFFSQLLKDVRRALVKILFMNCDVWTSKVSGDKFIG 150
            +KK+IVE+YA TT+ F S+L+KDVRRAL+ IL++NCD+WTS+VSG+K+IG
Sbjct:  256 IKKMIVEMYAATTRAFNSELVKDVRRALIPILYLNCDLWTSRVSGEKYIG 305
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BLAST of mRNA_L-digitata_M_contig100688.1.1 vs. uniprot
Match: A0A6H5KX27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX27_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.260e-15
Identity = 33/50 (66.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 VKKLIVELYAGTTKVFFSQLLKDVRRALVKILFMNCDVWTSKVSGDKFIG 150
            +KK+IVE+YA TT+ F S+L+KDVRRAL+ IL++NCD+WTS+VSG+K+IG
Sbjct:  177 IKKMIVEMYAATTRAFNSELVKDVRRALIPILYLNCDLWTSRVSGEKYIG 226
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BLAST of mRNA_L-digitata_M_contig100688.1.1 vs. uniprot
Match: A0A6H5K7T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 6.460e-13
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 VKKLIVELYAGTTKVFFSQLLKDVRRALVKILFMNCDVWTSKVSGDK 141
            VKK+IVE+YA TT+ F  Q+LKDVRRALV IL+MNCD+WTSK S DK
Sbjct:   23 VKKMIVEMYAATTEKFNRQILKDVRRALVPILYMNCDLWTSKGSQDK 69
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BLAST of mRNA_L-digitata_M_contig100688.1.1 vs. uniprot
Match: D7FX26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX26_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.330e-8
Identity = 24/43 (55.81%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   22 LYAGTTKVFFSQLLKDVRRALVKILFMNCDVWTSKVSGDKFIG 150
            +YA TT+   S ++KDVRRAL+ IL+++CD WTS++SG K+IG
Sbjct:    1 MYAATTRASNSNMVKDVRRALIPILYLDCDRWTSQISGHKYIG 43
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BLAST of mRNA_L-digitata_M_contig100688.1.1 vs. uniprot
Match: D7G3L2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L2_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.940e-8
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 VKKLIVELYAGTTKVFFSQLLKDVRRALVKILFMNCDVWTSKVSGDKFIG 150
            VKK+I E+Y  TT+ F + + K +R A + IL++NCD+WTS VSG K+IG
Sbjct:  116 VKKVIAEMYHATTQEFNASMQKTLRNATIPILYVNCDLWTSHVSGLKYIG 165
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BLAST of mRNA_L-digitata_M_contig100688.1.1 vs. uniprot
Match: D7G4Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z8_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.270e-7
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 VKKLIVELYAGTTKVFFSQLLKDVRRALVKILFMNCDVWTSKVSGDKFIG 150
            VKK+I ++Y  TT+ F + + K +R A + IL++NCD+WTS VSG K+IG
Sbjct:  116 VKKVIAKMYHVTTREFNASMQKTLRNATIPILYVNCDLWTSHVSGLKYIG 165
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BLAST of mRNA_L-digitata_M_contig100688.1.1 vs. uniprot
Match: A0A6H5JP19_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP19_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 6.100e-7
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   10 LIVELYAGTTKVFFSQLLKDVRRALVKILFMNCDVWTSKVSGDKFI 147
            +IVE+Y  T KV    L + +  A++ IL+ NCD+WT+KVSG+KFI
Sbjct:    1 MIVEMYNATLKVVNKDLQRQLALAIIPILYANCDIWTTKVSGEKFI 46
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100688.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L6Z1_9PHAE1.260e-1566.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX27_9PHAE1.260e-1566.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7T5_9PHAE6.460e-1372.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX26_ECTSI1.330e-855.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3L2_ECTSI1.940e-852.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4Z8_ECTSI1.270e-750.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP19_9PHAE6.100e-750.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100688contigL-digitata_M_contig100688:56..205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3L2
PFAMsDimer_Tnp_hAT
Model size150
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.19e-09
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406609.2369804-CDS-L-digitata_M_contig100688:55..2051682406609.2369804-CDS-L-digitata_M_contig100688:55..205Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100688 56..205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100688.1.1prot_L-digitata_M_contig100688.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100688 56..205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100688.1.1

>prot_L-digitata_M_contig100688.1.1 ID=prot_L-digitata_M_contig100688.1.1|Name=mRNA_L-digitata_M_contig100688.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=50bp
VKKLIVELYAGTTKVFFSQLLKDVRRALVKILFMNCDVWTSKVSGDKFIG
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mRNA from alignment at L-digitata_M_contig100688:56..205-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100688.1.1 ID=mRNA_L-digitata_M_contig100688.1.1|Name=mRNA_L-digitata_M_contig100688.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=150bp|location=Sequence derived from alignment at L-digitata_M_contig100688:56..205- (Laminaria digitata LdigPH10_18mv male)
GTCAAGAAGCTCATCGTCGAGCTGTATGCGGGCACCACGAAGGTTTTCTT
CTCCCAGCTACTGAAGGACGTCCGCCGTGCCCTCGTCAAGATCTTGTTCA
TGAACTGCGACGTGTGGACAAGCAAAGTTTCCGGGGACAAGTTCATTGGT
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Coding sequence (CDS) from alignment at L-digitata_M_contig100688:56..205-

>mRNA_L-digitata_M_contig100688.1.1 ID=mRNA_L-digitata_M_contig100688.1.1|Name=mRNA_L-digitata_M_contig100688.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=150bp|location=Sequence derived from alignment at L-digitata_M_contig100688:56..205- (Laminaria digitata LdigPH10_18mv male)
GTCAAGAAGCTCATCGTCGAGCTGTATGCGGGCACCACGAAGGTTTTCTT
CTCCCAGCTACTGAAGGACGTCCGCCGTGCCCTCGTCAAGATCTTGTTCA
TGAACTGCGACGTGTGGACAAGCAAAGTTTCCGGGGACAAGTTCATTGGT
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