mRNA_L-digitata_M_contig100674.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: D8LDU1_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU1_ECTSI) HSP 1 Score: 125 bits (313), Expect = 1.290e-33 Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 1
Query: 7 GHPLDTIKVRLQTQSNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAKNV 210
GHPLDTIKVRLQTQS+TNPEFSGM+DCFRKTMAREG GLYAGAA+PL GAMAHNAGVFFSYGM+K +
Sbjct: 28 GHPLDTIKVRLQTQSSTNPEFSGMVDCFRKTMAREGASGLYAGAAAPLWGAMAHNAGVFFSYGMSKKI 95
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: A0A835Z5H4_9STRA (Carnitine/acylcarnitine carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5H4_9STRA) HSP 1 Score: 123 bits (308), Expect = 8.060e-33 Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1
Query: 4 SGHPLDTIKVRLQTQSNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAKNV 210
+GHPLDTIKVRLQTQS+TNPEFSGM DC RKT+ REG+ GLYAGAASPLLGAMAHNAGVFFSYGMAK++
Sbjct: 27 AGHPLDTIKVRLQTQSSTNPEFSGMGDCIRKTIQREGLMGLYAGAASPLLGAMAHNAGVFFSYGMAKDI 95
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: A0A2R5GTK5_9STRA (Mitochondrial substrate carrier family protein G n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTK5_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 2.680e-23 Identity = 50/70 (71.43%), Postives = 56/70 (80.00%), Query Frame = 1
Query: 4 SGHPLDTIKVRLQTQS---NTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAK 204
+GHPLDTIKVRLQTQ + F+GM DC +KT ++EGV GLY GAASPLLGAMAHNAGVFFSYG AK
Sbjct: 24 AGHPLDTIKVRLQTQQPGPDGKMPFAGMADCAKKTFSKEGVSGLYKGAASPLLGAMAHNAGVFFSYGQAK 93
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: A0A6B2LCD6_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LCD6_9EUKA) HSP 1 Score: 97.8 bits (242), Expect = 4.240e-23 Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 1
Query: 4 SGHPLDTIKVRLQTQ---SNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAKNV 210
+GHPLDT+KVRLQTQ P+F+GM+DCF+KT+ EG KGLY GA SPL GAMAHNAG+FF YG +K +
Sbjct: 13 AGHPLDTVKVRLQTQVPVPGQPPQFNGMIDCFKKTVQHEGFKGLYKGAMSPLAGAMAHNAGIFFFYGQSKKI 84
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: A0A8J4PU31_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PU31_9MYCE) HSP 1 Score: 95.9 bits (237), Expect = 2.850e-22 Identity = 47/69 (68.12%), Postives = 54/69 (78.26%), Query Frame = 1
Query: 4 SGHPLDTIKVRLQTQSNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAKNV 210
SGHPLDTIKVRLQTQS TNP +SG MDC RKT+A+EG GLY G ASPL+G N+ +F SYG AKN+
Sbjct: 32 SGHPLDTIKVRLQTQSVTNPVYSGAMDCLRKTVAQEGALGLYKGVASPLVGLSIMNSVMFLSYGQAKNL 100
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: F0ZBC0_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZBC0_DICPU) HSP 1 Score: 87.0 bits (214), Expect = 6.670e-19 Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query: 1 YSGHPLDTIKVRLQTQSNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAKNV 210
++GHPLDTIKVRLQTQ NP +SG MDC RKT+ +EG GLY G ASPL+G N+ +F +YG AK V
Sbjct: 29 FTGHPLDTIKVRLQTQPVGNPIYSGTMDCLRKTIQQEGFMGLYKGVASPLVGLSIMNSVMFLAYGQAKTV 98
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: D3B5I3_POLPP (Mitochondrial substrate carrier family protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B5I3_POLPP) HSP 1 Score: 86.7 bits (213), Expect = 9.080e-19 Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 1
Query: 1 YSGHPLDTIKVRLQTQSNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAKNVRRG 219
++GHPLDTIKVRLQTQ P +SG +DC +KT+A EG GLY G ASPL+G NA +F SYG AK + +G
Sbjct: 29 FTGHPLDTIKVRLQTQPVGAPLYSGTLDCLKKTIAEEGFAGLYKGVASPLVGLCVMNAVMFLSYGQAKKIIQG 101
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: MCFG_DICDI (Mitochondrial substrate carrier family protein G n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=MCFG_DICDI) HSP 1 Score: 86.3 bits (212), Expect = 1.340e-18 Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1
Query: 1 YSGHPLDTIKVRLQTQSNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAKNV 210
++GHPLDTIKVRLQTQS NP +SG MDC +KT+++EG GLY G ASPL+G N+ +F +YG +K +
Sbjct: 29 FTGHPLDTIKVRLQTQSVGNPIYSGTMDCLKKTISQEGFAGLYKGVASPLVGLSIMNSVMFLAYGQSKTL 98
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: F4QC21_CAVFA (Mitochondrial substrate carrier family protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QC21_CAVFA) HSP 1 Score: 85.5 bits (210), Expect = 2.440e-18 Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 1
Query: 4 SGHPLDTIKVRLQTQSNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAKNVRRG 219
+GHPLDTIKVRLQTQ P +SG MDC +KT+A+EG GLY G SPL+G NA +FFSYG AK +G
Sbjct: 31 TGHPLDTIKVRLQTQPVGAPLYSGTMDCLKKTIAQEGFGGLYKGVTSPLVGLCLMNAVMFFSYGQAKKAIQG 102
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: UPI000644B470 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644B470) HSP 1 Score: 84.3 bits (207), Expect = 7.160e-18 Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1
Query: 4 SGHPLDTIKVRLQTQSNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAKN 207
+GHPLDT+KVRLQTQS +P +SG +DCF+KT+A EG GLY G SPL+G NA +F +YG AK+
Sbjct: 32 TGHPLDTVKVRLQTQSVGSPLYSGTLDCFKKTIANEGFAGLYKGVQSPLVGLCFMNAVMFLAYGQAKS 99 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100674.1.1 >prot_L-digitata_M_contig100674.1.1 ID=prot_L-digitata_M_contig100674.1.1|Name=mRNA_L-digitata_M_contig100674.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=73bp YSGHPLDTIKVRLQTQSNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLback to top mRNA from alignment at L-digitata_M_contig100674:562..780+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100674.1.1 ID=mRNA_L-digitata_M_contig100674.1.1|Name=mRNA_L-digitata_M_contig100674.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=219bp|location=Sequence derived from alignment at L-digitata_M_contig100674:562..780+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100674:562..780+ >mRNA_L-digitata_M_contig100674.1.1 ID=mRNA_L-digitata_M_contig100674.1.1|Name=mRNA_L-digitata_M_contig100674.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=219bp|location=Sequence derived from alignment at L-digitata_M_contig100674:562..780+ (Laminaria digitata LdigPH10_18mv male)back to top |