mRNA_L-digitata_M_contig100674.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100674.1.1
Unique NamemRNA_L-digitata_M_contig100674.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: D8LDU1_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU1_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.290e-33
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 1
Query:    7 GHPLDTIKVRLQTQSNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAKNV 210
            GHPLDTIKVRLQTQS+TNPEFSGM+DCFRKTMAREG  GLYAGAA+PL GAMAHNAGVFFSYGM+K +
Sbjct:   28 GHPLDTIKVRLQTQSSTNPEFSGMVDCFRKTMAREGASGLYAGAAAPLWGAMAHNAGVFFSYGMSKKI 95          
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: A0A835Z5H4_9STRA (Carnitine/acylcarnitine carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5H4_9STRA)

HSP 1 Score: 123 bits (308), Expect = 8.060e-33
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1
Query:    4 SGHPLDTIKVRLQTQSNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAKNV 210
            +GHPLDTIKVRLQTQS+TNPEFSGM DC RKT+ REG+ GLYAGAASPLLGAMAHNAGVFFSYGMAK++
Sbjct:   27 AGHPLDTIKVRLQTQSSTNPEFSGMGDCIRKTIQREGLMGLYAGAASPLLGAMAHNAGVFFSYGMAKDI 95          
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: A0A2R5GTK5_9STRA (Mitochondrial substrate carrier family protein G n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTK5_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.680e-23
Identity = 50/70 (71.43%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    4 SGHPLDTIKVRLQTQS---NTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAK 204
            +GHPLDTIKVRLQTQ    +    F+GM DC +KT ++EGV GLY GAASPLLGAMAHNAGVFFSYG AK
Sbjct:   24 AGHPLDTIKVRLQTQQPGPDGKMPFAGMADCAKKTFSKEGVSGLYKGAASPLLGAMAHNAGVFFSYGQAK 93          
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: A0A6B2LCD6_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LCD6_9EUKA)

HSP 1 Score: 97.8 bits (242), Expect = 4.240e-23
Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    4 SGHPLDTIKVRLQTQ---SNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAKNV 210
            +GHPLDT+KVRLQTQ       P+F+GM+DCF+KT+  EG KGLY GA SPL GAMAHNAG+FF YG +K +
Sbjct:   13 AGHPLDTVKVRLQTQVPVPGQPPQFNGMIDCFKKTVQHEGFKGLYKGAMSPLAGAMAHNAGIFFFYGQSKKI 84          
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: A0A8J4PU31_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PU31_9MYCE)

HSP 1 Score: 95.9 bits (237), Expect = 2.850e-22
Identity = 47/69 (68.12%), Postives = 54/69 (78.26%), Query Frame = 1
Query:    4 SGHPLDTIKVRLQTQSNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAKNV 210
            SGHPLDTIKVRLQTQS TNP +SG MDC RKT+A+EG  GLY G ASPL+G    N+ +F SYG AKN+
Sbjct:   32 SGHPLDTIKVRLQTQSVTNPVYSGAMDCLRKTVAQEGALGLYKGVASPLVGLSIMNSVMFLSYGQAKNL 100          
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: F0ZBC0_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZBC0_DICPU)

HSP 1 Score: 87.0 bits (214), Expect = 6.670e-19
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 YSGHPLDTIKVRLQTQSNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAKNV 210
            ++GHPLDTIKVRLQTQ   NP +SG MDC RKT+ +EG  GLY G ASPL+G    N+ +F +YG AK V
Sbjct:   29 FTGHPLDTIKVRLQTQPVGNPIYSGTMDCLRKTIQQEGFMGLYKGVASPLVGLSIMNSVMFLAYGQAKTV 98          
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: D3B5I3_POLPP (Mitochondrial substrate carrier family protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B5I3_POLPP)

HSP 1 Score: 86.7 bits (213), Expect = 9.080e-19
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    1 YSGHPLDTIKVRLQTQSNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAKNVRRG 219
            ++GHPLDTIKVRLQTQ    P +SG +DC +KT+A EG  GLY G ASPL+G    NA +F SYG AK + +G
Sbjct:   29 FTGHPLDTIKVRLQTQPVGAPLYSGTLDCLKKTIAEEGFAGLYKGVASPLVGLCVMNAVMFLSYGQAKKIIQG 101          
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: MCFG_DICDI (Mitochondrial substrate carrier family protein G n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=MCFG_DICDI)

HSP 1 Score: 86.3 bits (212), Expect = 1.340e-18
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 YSGHPLDTIKVRLQTQSNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAKNV 210
            ++GHPLDTIKVRLQTQS  NP +SG MDC +KT+++EG  GLY G ASPL+G    N+ +F +YG +K +
Sbjct:   29 FTGHPLDTIKVRLQTQSVGNPIYSGTMDCLKKTISQEGFAGLYKGVASPLVGLSIMNSVMFLAYGQSKTL 98          
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: F4QC21_CAVFA (Mitochondrial substrate carrier family protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QC21_CAVFA)

HSP 1 Score: 85.5 bits (210), Expect = 2.440e-18
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    4 SGHPLDTIKVRLQTQSNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAKNVRRG 219
            +GHPLDTIKVRLQTQ    P +SG MDC +KT+A+EG  GLY G  SPL+G    NA +FFSYG AK   +G
Sbjct:   31 TGHPLDTIKVRLQTQPVGAPLYSGTMDCLKKTIAQEGFGGLYKGVTSPLVGLCLMNAVMFFSYGQAKKAIQG 102          
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Match: UPI000644B470 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644B470)

HSP 1 Score: 84.3 bits (207), Expect = 7.160e-18
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    4 SGHPLDTIKVRLQTQSNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPLLGAMAHNAGVFFSYGMAKN 207
            +GHPLDT+KVRLQTQS  +P +SG +DCF+KT+A EG  GLY G  SPL+G    NA +F +YG AK+
Sbjct:   32 TGHPLDTVKVRLQTQSVGSPLYSGTLDCFKKTIANEGFAGLYKGVQSPLVGLCFMNAVMFLAYGQAKS 99          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100674.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDU1_ECTSI1.290e-3386.76Carnitine/acylcarnitine carrier protein n=1 Tax=Ec... [more]
A0A835Z5H4_9STRA8.060e-3385.51Carnitine/acylcarnitine carrier protein n=1 Tax=Tr... [more]
A0A2R5GTK5_9STRA2.680e-2371.43Mitochondrial substrate carrier family protein G n... [more]
A0A6B2LCD6_9EUKA4.240e-2363.89Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A8J4PU31_9MYCE2.850e-2268.12Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
F0ZBC0_DICPU6.670e-1960.00Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
D3B5I3_POLPP9.080e-1957.53Mitochondrial substrate carrier family protein n=1... [more]
MCFG_DICDI1.340e-1857.14Mitochondrial substrate carrier family protein G n... [more]
F4QC21_CAVFA2.440e-1859.72Mitochondrial substrate carrier family protein n=1... [more]
UPI000644B4707.160e-1858.82hypothetical protein n=1 Tax=Acytostelium subglobo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100674contigL-digitata_M_contig100674:562..780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LDU1
PFAMsMito_carr
Model size219
Max annot lvl2759|Eukaryota
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006839,GO:0008150,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085
Exons1
Evalue2.12e-34
EggNOG OGsKOG0758@1|root,KOG0758@2759|Eukaryota
Descriptionmitochondrial transport
Cds size219
COG categoryU
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406609.2104537-CDS-L-digitata_M_contig100674:561..7801682406609.2104537-CDS-L-digitata_M_contig100674:561..780Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100674 562..780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100674.1.1prot_L-digitata_M_contig100674.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100674 562..780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100674.1.1

>prot_L-digitata_M_contig100674.1.1 ID=prot_L-digitata_M_contig100674.1.1|Name=mRNA_L-digitata_M_contig100674.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=73bp
YSGHPLDTIKVRLQTQSNTNPEFSGMMDCFRKTMAREGVKGLYAGAASPL
LGAMAHNAGVFFSYGMAKNVRRG
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mRNA from alignment at L-digitata_M_contig100674:562..780+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100674.1.1 ID=mRNA_L-digitata_M_contig100674.1.1|Name=mRNA_L-digitata_M_contig100674.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=219bp|location=Sequence derived from alignment at L-digitata_M_contig100674:562..780+ (Laminaria digitata LdigPH10_18mv male)
TACTCAGGCCACCCTTTGGACACCATTAAGGTGCGGCTGCAGACACAGTC CAACACCAACCCCGAGTTTTCTGGCATGATGGACTGCTTCCGCAAAACGA TGGCGCGAGAAGGCGTTAAGGGTTTGTACGCGGGGGCTGCGTCGCCGCTG CTCGGGGCCATGGCGCACAACGCGGGGGTGTTCTTCAGCTACGGCATGGC CAAGAATGTAAGGAGGGGG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100674:562..780+

>mRNA_L-digitata_M_contig100674.1.1 ID=mRNA_L-digitata_M_contig100674.1.1|Name=mRNA_L-digitata_M_contig100674.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=219bp|location=Sequence derived from alignment at L-digitata_M_contig100674:562..780+ (Laminaria digitata LdigPH10_18mv male)
TACTCAGGCCACCCTTTGGACACCATTAAGGTGCGGCTGCAGACACAGTC
CAACACCAACCCCGAGTTTTCTGGCATGATGGACTGCTTCCGCAAAACGA
TGGCGCGAGAAGGCGTTAAGGGTTTGTACGCGGGGGCTGCGTCGCCGCTG
CTCGGGGCCATGGCGCACAACGCGGGGGTGTTCTTCAGCTACGGCATGGC
CAAGAATGTAAGGAGGGGG
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