mRNA_L-digitata_M_contig100672.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
|
Overview
Homology
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A2D8PUJ9_9PROT (Benzoate transporter n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PUJ9_9PROT) HSP 1 Score: 149 bits (376), Expect = 2.680e-40 Identity = 75/104 (72.12%), Postives = 81/104 (77.88%), Query Frame = 1
Query: 43 TDKSTPDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPLP 354
T K+ LRSWIETLE AGQ K + A V W EEIGA+TRANMALGG AL ENIRDHTDTLCT+LMTCGLSTRER A+MA LP +TSDK L R F DRYR P P
Sbjct: 3 TKKAETSLRSWIETLEXAGQXKXVXAPVXWXEEIGAVTRANMALGGXALXXENIRDHTDTLCTQLMTCGLSTRERVALMAGLPADTSDKDLVRCFKDRYRDPQP 106
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A0Q2QIV8_MYCGO (Benzoate transporter n=6 Tax=Mycobacteriaceae TaxID=1762 RepID=A0A0Q2QIV8_MYCGO) HSP 1 Score: 133 bits (334), Expect = 2.510e-34 Identity = 63/105 (60.00%), Postives = 81/105 (77.14%), Query Frame = 1
Query: 40 MTDKSTPDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPLP 354
M+D S PDLRSW+ TLE AGQL+RI ARVDW+EEIGAITRAN++LGGPAL+FENI H DT CT+L+T G+ ++ + +M LP +TSD A+ R D +R P+P
Sbjct: 1 MSDAS-PDLRSWLATLEAAGQLRRIVARVDWNEEIGAITRANLSLGGPALLFENIAGHEDTRCTKLLTSGIGSQRQIQLMLGLPADTSDAAIVRRLKDAFRQPIP 104
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A1A3BBL9_MYCAS (Benzoate transporter n=10 Tax=Mycobacterium TaxID=1763 RepID=A0A1A3BBL9_MYCAS) HSP 1 Score: 132 bits (333), Expect = 4.430e-34 Identity = 61/108 (56.48%), Postives = 81/108 (75.00%), Query Frame = 1
Query: 31 GSQMTDKSTPDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPLP 354
G +++++ PDLRSW+ TLE AGQL+ I+ARVDWDEEIGAITRAN++LGGPAL+FENI H DT CT+ +T + R + +M LPP TSD A+ RH D ++ P+P
Sbjct: 14 GDIVSNEAAPDLRSWLATLEAAGQLRHITARVDWDEEIGAITRANLSLGGPALLFENIVGHEDTRCTKFLTSAIGNRCQIRLMLGLPPGTSDGAVVRHLKDAFQQPVP 121
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A1A2GIJ0_9MYCO (Benzoate transporter n=6 Tax=Mycobacterium TaxID=1763 RepID=A0A1A2GIJ0_9MYCO) HSP 1 Score: 129 bits (324), Expect = 8.080e-33 Identity = 58/109 (53.21%), Postives = 79/109 (72.48%), Query Frame = 1
Query: 25 IAGSQMTDKSTPDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPL 351
+A + D+ PDLRSW+ TLE A QL+R++ARVDWDEEIGAITRAN++LGGPAL+FENI H +T CT+ +T + R + +M LP +TSD A+ RH D ++ P+
Sbjct: 8 LANRREPDQDGPDLRSWLATLEAANQLRRVTARVDWDEEIGAITRANLSLGGPALLFENIVGHENTRCTKFLTSAIGNRRQIQLMLGLPEDTSDSAVVRHLKDAFQKPI 116
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A1A2SBY8_9MYCO (Benzoate transporter n=1 Tax=Mycobacterium sp. E2479 TaxID=1834134 RepID=A0A1A2SBY8_9MYCO) HSP 1 Score: 129 bits (324), Expect = 8.510e-33 Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 1
Query: 34 SQMTDKST-PDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPLP 354
+Q D+ T PDLRSW+ TLE A QL+RI A VDWDEEIGAITRAN+ALGGP L+FE+I DH T CT+L+T L +R + +M LP TSD A+ RH D ++ P+P
Sbjct: 17 TQSRDEETGPDLRSWLATLEEANQLRRIKASVDWDEEIGAITRANLALGGPGLLFEHIVDHESTWCTKLLTSALGSRRQVQLMLGLPEGTSDSAIVRHLRDAFKKPIP 124
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A1A2ZQF8_9MYCO (Benzoate transporter n=2 Tax=Mycobacterium TaxID=1763 RepID=A0A1A2ZQF8_9MYCO) HSP 1 Score: 129 bits (323), Expect = 1.150e-32 Identity = 57/99 (57.58%), Postives = 75/99 (75.76%), Query Frame = 1
Query: 58 PDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPLP 354
PD RSW+ TLE AGQL+RI+A VDWDEEIGAITRAN++LGGP L+FENI DH +T CT+L+T L +R + +M LP +T D A+ RH + ++ P+P
Sbjct: 23 PDQRSWLATLEAAGQLRRITASVDWDEEIGAITRANLSLGGPGLLFENIVDHENTWCTKLLTSALGSRRQVQLMLGLPEDTGDSAIVRHLREAFKKPIP 121
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A1A3E410_9MYCO (Benzoate transporter n=2 Tax=Mycobacterium TaxID=1763 RepID=A0A1A3E410_9MYCO) HSP 1 Score: 128 bits (322), Expect = 1.590e-32 Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 1
Query: 1 TETPRPHVIAGSQMTDKST-PDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPLP 354
T T P +Q TD+ T PD RSW+ TLE AGQL+R++A VDW+EEIGAITRAN++LGGPAL+FENI H +T CT+L+T + R + +M LP TSD A+ RH + ++ P+P
Sbjct: 3 TSTRPPETTNITQRTDQETGPDQRSWLATLEAAGQLRRVTAPVDWNEEIGAITRANLSLGGPALLFENIIGHENTRCTKLLTSAIGNRRQVQLMLGLPENTSDAAIVRHLREAFKKPIP 121
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A1A3I343_9MYCO (Benzoate transporter n=1 Tax=Mycobacterium sp. 1423905.2 TaxID=1856859 RepID=A0A1A3I343_9MYCO) HSP 1 Score: 128 bits (321), Expect = 2.150e-32 Identity = 59/110 (53.64%), Postives = 78/110 (70.91%), Query Frame = 1
Query: 25 IAGSQMTDKSTPDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPLP 354
+A Q + PDLRSW+ TL+ A QL+RISARVDW+EEIGAITRAN++LGGPAL+FENI H DT CT+L+T + R + +M +LP D A+ RH D ++ P+P
Sbjct: 8 LATQQQDADTGPDLRSWLATLQAADQLRRISARVDWNEEIGAITRANLSLGGPALLFENIVGHEDTRCTKLLTSAIGNRRQIQLMLNLPESADDSAIVRHLKDVFKKPIP 117
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A1A3TRM9_MYCSD (Benzoate transporter n=2 Tax=Mycolicibacter sinensis (strain JDM601) TaxID=875328 RepID=A0A1A3TRM9_MYCSD) HSP 1 Score: 128 bits (321), Expect = 2.200e-32 Identity = 57/99 (57.58%), Postives = 75/99 (75.76%), Query Frame = 1
Query: 58 PDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPLP 354
PDLRSW++TLE+AGQL RI+A VDWDEEIGAITRAN+ LGGPAL+FENI H +T CT+L+T + +R + ++ LP T D A+ RH + +R P+P
Sbjct: 23 PDLRSWLDTLESAGQLSRITAAVDWDEEIGAITRANLCLGGPALLFENITGHENTRCTKLLTSAIGSRRQVQLLLGLPEGTGDSAMVRHLREAFRNPVP 121
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Match: A0A1X1Y269_9MYCO (Decarboxylase UbiD n=1 Tax=Mycobacterium lacus TaxID=169765 RepID=A0A1X1Y269_9MYCO) HSP 1 Score: 127 bits (320), Expect = 2.660e-32 Identity = 56/99 (56.57%), Postives = 74/99 (74.75%), Query Frame = 1
Query: 58 PDLRSWIETLETAGQLKRISARVDWDEEIGAITRANMALGGPALIFENIRDHTDTLCTRLMTCGLSTRERTAIMADLPPETSDKALARHFNDRYRAPLP 354
PDLRSW+ TLE AGQL+R++A+VDW+EEIGAITRAN++LGGPAL+FENI H DT C R +T + R + +M LP T+D A+ RH D ++ P+P
Sbjct: 6 PDLRSWLATLEAAGQLRRVTAQVDWNEEIGAITRANLSLGGPALLFENIVGHQDTRCRRFLTSAIGNRRQVQLMLGLPENTNDSAIVRHLRDTFKKPIP 104 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100672.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100672.1.1 >prot_L-digitata_M_contig100672.1.1 ID=prot_L-digitata_M_contig100672.1.1|Name=mRNA_L-digitata_M_contig100672.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=118bp TETPRPHVIAGSQMTDKSTPDLRSWIETLETAGQLKRISARVDWDEEIGAback to top mRNA from alignment at L-digitata_M_contig100672:1..354- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100672.1.1 ID=mRNA_L-digitata_M_contig100672.1.1|Name=mRNA_L-digitata_M_contig100672.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=354bp|location=Sequence derived from alignment at L-digitata_M_contig100672:1..354- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100672:1..354- >mRNA_L-digitata_M_contig100672.1.1 ID=mRNA_L-digitata_M_contig100672.1.1|Name=mRNA_L-digitata_M_contig100672.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=354bp|location=Sequence derived from alignment at L-digitata_M_contig100672:1..354- (Laminaria digitata LdigPH10_18mv male)back to top |