mRNA_L-digitata_M_contig100659.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100659.2.1
Unique NamemRNA_L-digitata_M_contig100659.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100659.2.1 vs. uniprot
Match: D8LTR7_ECTSI (3-ketoacyl-CoA synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR7_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.350e-45
Identity = 75/84 (89.29%), Postives = 82/84 (97.62%), Query Frame = 1
Query:    1 AMETTLKTTSREIVFDLGWKSTALFVVFVWWMSRSSSPLYMVDFSTFEPPEEWKVTHEQLAEIMRRQGCFTPESVSFMEKILSK 252
            AM++TL+TTSR++ FDLGWKSTALFVVFVWWMSR S+PLYMVDFSTFEPPEEWKVTH+QLAEIMRRQGCFTPESVSFMEKILSK
Sbjct:   95 AMQSTLQTTSRDLFFDLGWKSTALFVVFVWWMSRGSAPLYMVDFSTFEPPEEWKVTHDQLAEIMRRQGCFTPESVSFMEKILSK 178          
BLAST of mRNA_L-digitata_M_contig100659.2.1 vs. uniprot
Match: A0A835YTW0_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW0_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.100e-22
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   25 TSREIVFDLGWKSTALFVVFVWWMSRSSSPLYMVDFSTFEPPEEWKVTHEQLAEIMRRQGCFTPESVSFMEKILS 249
            TS  +   LGW++TAL V  +WW+    +P+Y++DF+ FEPP  WKVTHEQL EIMRRQ CFT +S+ FM +IL+
Sbjct:   81 TSPAVAVGLGWRATALVVAALWWLGHRRTPVYLLDFAVFEPPASWKVTHEQLIEIMRRQKCFTHDSIEFMARILA 155          
BLAST of mRNA_L-digitata_M_contig100659.2.1 vs. uniprot
Match: F0YI68_AURAN (3-ketoacyl-CoA synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI68_AURAN)

HSP 1 Score: 90.5 bits (223), Expect = 2.360e-19
Identity = 36/71 (50.70%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   40 VFDLGWKSTALFVVFVWWMSRSSSPLYMVDFSTFEPPEEWKVTHEQLAEIMRRQGCFTPESVSFMEKILSK 252
            + D+ W+ST L +  VW+++R   P+Y+VDF TFEPPE W++TH++L   MRRQ CFT ES++F+++IL K
Sbjct:  101 LLDMSWRSTLLGLCLVWYLARHHHPVYLVDFVTFEPPESWRLTHDELMTCMRRQRCFTEESIAFLKRILDK 171          
BLAST of mRNA_L-digitata_M_contig100659.2.1 vs. uniprot
Match: F0YHH3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHH3_AURAN)

HSP 1 Score: 90.5 bits (223), Expect = 2.660e-19
Identity = 36/71 (50.70%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   40 VFDLGWKSTALFVVFVWWMSRSSSPLYMVDFSTFEPPEEWKVTHEQLAEIMRRQGCFTPESVSFMEKILSK 252
            + D+ W+ST L +  VW+++R   P+Y+VDF TFEPPE W++TH++L   MRRQ CFT ES++F+++IL K
Sbjct: 4630 LLDMSWRSTLLGLCLVWYLARHHHPVYLVDFVTFEPPESWRLTHDELMTCMRRQRCFTEESIAFLKRILDK 4700          
BLAST of mRNA_L-digitata_M_contig100659.2.1 vs. uniprot
Match: A0A8J2S738_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S738_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 8.460e-19
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   40 VFDLGWKSTALFVVFVWWMSRSSSPLYMVDFSTFEPPEEWKVTHEQLAEIMRRQGCFTPESVSFMEKILSK 252
            + D+ W+ST L +  VW+++R   P+Y+VDF TFEPPE W++TH+QL   M+RQ CFT ES+ F+++IL K
Sbjct:  100 LLDMSWRSTLLGLCLVWYLARHHHPVYLVDFVTFEPPESWQLTHDQLMTCMQRQRCFTEESIMFLKRILDK 170          
BLAST of mRNA_L-digitata_M_contig100659.2.1 vs. uniprot
Match: A0A7S2XYV1_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYV1_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.940e-18
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:   28 SREIVFDLGWKSTALFVVFVWWMSRSSSPLYMVDFSTFEPPEEWKVTHEQLAEIMRRQGCFTPESVSFMEKILSK 252
            S  ++FDLGWK   L  + + ++SR  +  Y+VDFS FEPP +WKVTHE+L  +M  Q CFT +SV FM+KIL++
Sbjct:   93 SSNLMFDLGWKLALLLGLLIAFLSRRKATTYLVDFSCFEPPNDWKVTHEELRTLMLAQKCFTEDSVGFMDKILAR 167          
BLAST of mRNA_L-digitata_M_contig100659.2.1 vs. uniprot
Match: A0A7S4DBI7_HETAK (3-ketoacyl-CoA synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBI7_HETAK)

HSP 1 Score: 87.0 bits (214), Expect = 4.080e-18
Identity = 37/79 (46.84%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   16 LKTTSREIVFDLGWKSTALFVVFVWWMSRSSSPLYMVDFSTFEPPEEWKVTHEQLAEIMRRQGCFTPESVSFMEKILSK 252
            L  ++ + VFDL WK T L  + + +++R    +Y+VDF+ FEPPE+WKV HE+L +IMR Q CF+ +S+ FME+IL++
Sbjct:  118 LAPSTSDAVFDLAWKFTLLAALLLIYLARRGQNVYLVDFACFEPPEDWKVNHEELVQIMRAQRCFSDDSLKFMERILAR 196          
BLAST of mRNA_L-digitata_M_contig100659.2.1 vs. uniprot
Match: A0A482RUR0_9ARCH (FAE domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUR0_9ARCH)

HSP 1 Score: 81.6 bits (200), Expect = 6.100e-18
Identity = 30/75 (40.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   28 SREIVFDLGWKSTALFVVFVWWMSRSSSPLYMVDFSTFEPPEEWKVTHEQLAEIMRRQGCFTPESVSFMEKILSK 252
            S+   F+LGW++ A+  + VW +      +Y++DF+TF+ P+ WKV+ EQ+ E++R QGC+T +S+SFM+++L +
Sbjct:   22 SKPFAFNLGWQTVAILAILVWLLYNREKRVYLLDFATFDAPDSWKVSQEQIIEMLRIQGCYTEQSLSFMDRMLKQ 96          
BLAST of mRNA_L-digitata_M_contig100659.2.1 vs. uniprot
Match: A0A7S2WTL4_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTL4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.190e-16
Identity = 36/76 (47.37%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   25 TSREIVFDLGWKSTALFVVFVWWMSRSSSPLYMVDFSTFEPPEEWKVTHEQLAEIMRRQGCFTPESVSFMEKILSK 252
            T +  V+ LGW+ T L +  V+  +R    +Y++DF T+EPP +WKV+H QL EIMRRQ CFT ES++ M ++L+K
Sbjct:   78 TGKPEVWFLGWQGTFLTLTLVYLFARRERQVYLLDFCTWEPPADWKVSHAQLIEIMRRQACFTEESLNLMGRVLAK 153          
BLAST of mRNA_L-digitata_M_contig100659.2.1 vs. uniprot
Match: A0A7S2CUL9_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CUL9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.110e-15
Identity = 34/76 (44.74%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   25 TSREIVFDLGWKSTALFVVFVWWMSRSSSPLYMVDFSTFEPPEEWKVTHEQLAEIMRRQGCFTPESVSFMEKILSK 252
            T++  V+ LGW+ + +  + V+  ++  +  Y+++F TFE PEEWKVTH QL E+MRRQ CF+ ES++F+ +IL K
Sbjct:   68 TAKPQVWFLGWQGSFITALLVYLFAKRPAQTYLLEFCTFEAPEEWKVTHSQLMEMMRRQQCFSEESINFLSRILDK 143          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100659.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTR7_ECTSI1.350e-4589.293-ketoacyl-CoA synthase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YTW0_9STRA3.100e-2254.673-ketoacyl-CoA synthase n=1 Tax=Tribonema minus Ta... [more]
F0YI68_AURAN2.360e-1950.703-ketoacyl-CoA synthase n=1 Tax=Aureococcus anopha... [more]
F0YHH3_AURAN2.660e-1950.70Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2S738_9STRA8.460e-1950.703-ketoacyl-CoA synthase n=1 Tax=Pelagomonas calceo... [more]
A0A7S2XYV1_9STRA2.940e-1850.673-ketoacyl-CoA synthase n=1 Tax=Fibrocapsa japonic... [more]
A0A7S4DBI7_HETAK4.080e-1846.843-ketoacyl-CoA synthase n=1 Tax=Heterosigma akashi... [more]
A0A482RUR0_9ARCH6.100e-1840.00FAE domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A7S2WTL4_9STRA3.190e-1647.373-ketoacyl-CoA synthase n=1 Tax=Rhizochromulina ma... [more]
A0A7S2CUL9_9STRA1.110e-1544.743-ketoacyl-CoA synthase n=1 Tax=Florenciella parvu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100659contigL-digitata_M_contig100659:472..726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTR7
PFAMsACP_syn_III_C,Chal_sti_synt_C,FAE1_CUT1_RppA
Model size255
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC02888,RC02997
KEGG koko:K15397
KEGG ReactionR09419,R10825
KEGG Pathwayko00062,ko01110,map00062,map01110
KEGG ModuleM00415
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.81e-46
EggNOG OGsCOG3424@1|root,2QPKZ@2759|Eukaryota
Ec32 ortholog description3-ketoacyl-CoA synthase
Ec32 orthologEc-28_003080.1
EC2.3.1.199
Descriptionvery-long-chain 3-ketoacyl-CoA synthase activity
Cds size252
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406609.114224-CDS-L-digitata_M_contig100659:471..7231682406609.114224-CDS-L-digitata_M_contig100659:471..723Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100659 472..723 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406609.1263201-UTR-L-digitata_M_contig100659:723..7261682406609.1263201-UTR-L-digitata_M_contig100659:723..726Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100659 724..726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100659.2.1prot_L-digitata_M_contig100659.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100659 472..723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100659.2.1

>prot_L-digitata_M_contig100659.2.1 ID=prot_L-digitata_M_contig100659.2.1|Name=mRNA_L-digitata_M_contig100659.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=84bp
METTLKTTSREIVFDLGWKSTALFVVFVWWMSRSSSPLYMVDFSTFEPPE
EWKVTHEQLAEIMRRQGCFTPESVSFMEKILSK*
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mRNA from alignment at L-digitata_M_contig100659:472..726-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100659.2.1 ID=mRNA_L-digitata_M_contig100659.2.1|Name=mRNA_L-digitata_M_contig100659.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=255bp|location=Sequence derived from alignment at L-digitata_M_contig100659:472..726- (Laminaria digitata LdigPH10_18mv male)
GCGATGGAGACGACGCTGAAAACTACCTCGAGGGAAATCGTTTTCGATCT CGGCTGGAAGAGTACCGCTCTCTTCGTGGTGTTTGTTTGGTGGATGTCCC GGTCCAGCTCGCCGCTGTACATGGTTGATTTCTCGACCTTTGAGCCACCT GAGGAGTGGAAGGTGACCCACGAGCAGCTCGCGGAGATCATGCGGAGACA GGGCTGCTTCACGCCGGAGTCTGTGTCCTTCATGGAGAAAATTCTGTCAA AGTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100659:472..726-

>mRNA_L-digitata_M_contig100659.2.1 ID=mRNA_L-digitata_M_contig100659.2.1|Name=mRNA_L-digitata_M_contig100659.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=252bp|location=Sequence derived from alignment at L-digitata_M_contig100659:472..726- (Laminaria digitata LdigPH10_18mv male)
ATGGAGACGACGCTGAAAACTACCTCGAGGGAAATCGTTTTCGATCTCGG
CTGGAAGAGTACCGCTCTCTTCGTGGTGTTTGTTTGGTGGATGTCCCGGT
CCAGCTCGCCGCTGTACATGGTTGATTTCTCGACCTTTGAGCCACCTGAG
GAGTGGAAGGTGACCCACGAGCAGCTCGCGGAGATCATGCGGAGACAGGG
CTGCTTCACGCCGGAGTCTGTGTCCTTCATGGAGAAAATTCTGTCAAAGT
GA
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