mRNA_L-digitata_M_contig100646.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100646.2.1
Unique NamemRNA_L-digitata_M_contig100646.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100646.2.1 vs. uniprot
Match: A0A2E7C410_9GAMM (Probable membrane transporter protein n=9 Tax=Halieaceae TaxID=1706372 RepID=A0A2E7C410_9GAMM)

HSP 1 Score: 265 bits (677), Expect = 2.170e-87
Identity = 142/151 (94.04%), Postives = 146/151 (96.69%), Query Frame = 1
Query:    1 VLLGLRMLLFGGRNPAPGRELAAGGLARLFPLGIGGLSSMMGIGGGTFSVPVLTLLGLGIHRAVGTSALFGLLISVPGALAYVATGWGDARLPAGSLGYVSLPGLACIAPMTVLAAPLGARLAHRLSARQLNLAFGVFLVLVASRMLYRAL 453
            +LLGLRMLLFGGRNPAPGREL+ GGLARLFPLGIGGLSSMMGIGGGTFSVPVLTLLG  IHRAVGTSALFGLLIS+PGALAYVATGWGD RLPAGSLG+VSLPGLACIAPMTVLAAPLGARLAHRLSARQLN AFGVFLVLVASRMLYRAL
Sbjct:  123 ILLGLRMLLFGGRNPAPGRELSPGGLARLFPLGIGGLSSMMGIGGGTFSVPVLTLLGHSIHRAVGTSALFGLLISLPGALAYVATGWGDDRLPAGSLGFVSLPGLACIAPMTVLAAPLGARLAHRLSARQLNFAFGVFLVLVASRMLYRAL 273          
BLAST of mRNA_L-digitata_M_contig100646.2.1 vs. uniprot
Match: A0A2N5Y5R5_9GAMM (Probable membrane transporter protein n=1 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y5R5_9GAMM)

HSP 1 Score: 213 bits (542), Expect = 6.670e-67
Identity = 116/151 (76.82%), Postives = 129/151 (85.43%), Query Frame = 1
Query:    1 VLLGLRMLLFGGRNPAPGRELAAGGLARLFPLGIGGLSSMMGIGGGTFSVPVLTLLGLGIHRAVGTSALFGLLISVPGALAYVATGWGDARLPAGSLGYVSLPGLACIAPMTVLAAPLGARLAHRLSARQLNLAFGVFLVLVASRMLYRAL 453
            VL+ LRMLLFGGR P P R +  G LARL PLGIGGLSSMMGIGGGTFSVPVLTLLG  IHRAVGTSA FGLLIS+PGA+A+   GWGD RLP GS+G+V+L GLA IAPMT+LAAP GARLAH L+ARQLNLAFG+FL++VA RMLYRAL
Sbjct:  123 VLMALRMLLFGGRAPGPARAMPMGVLARLVPLGIGGLSSMMGIGGGTFSVPVLTLLGQPIHRAVGTSAFFGLLISLPGAIAFGLAGWGDPRLPPGSVGFVNLAGLAFIAPMTMLAAPWGARLAHHLNARQLNLAFGLFLLIVALRMLYRAL 273          
BLAST of mRNA_L-digitata_M_contig100646.2.1 vs. uniprot
Match: A0A2D5FFU2_9GAMM (Probable membrane transporter protein n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D5FFU2_9GAMM)

HSP 1 Score: 192 bits (488), Expect = 1.030e-58
Identity = 109/150 (72.67%), Postives = 121/150 (80.67%), Query Frame = 1
Query:    4 LLGLRMLLFGGRNPAPGRELAAGGLARLFPLGIGGLSSMMGIGGGTFSVPVLTLLGLGIHRAVGTSALFGLLISVPGALAYVATGWGDARLPAGSLGYVSLPGLACIAPMTVLAAPLGARLAHRLSARQLNLAFGVFLVLVASRMLYRAL 453
            ++ LRMLL  G   A  R +  G + RLFPLGIGG+SS+MGIGGGT SVP L+LLGL +HRAVGTSALFGLLI++PGALAYV TGWGD RLP GSLG+VSLPGL CIAPMTVL APLG RLAHRLS   L L FG FL+LVA RMLYRAL
Sbjct:  124 VMALRMLLPAG-TLALVRAIPPGPVGRLFPLGIGGVSSIMGIGGGTLSVPTLSLLGLSMHRAVGTSALFGLLIALPGALAYVVTGWGDPRLPPGSLGFVSLPGLLCIAPMTVLTAPLGVRLAHRLSPLHLRLFFGGFLLLVALRMLYRAL 272          
BLAST of mRNA_L-digitata_M_contig100646.2.1 vs. uniprot
Match: UPI0019D34743 (sulfite exporter TauE/SafE family protein n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0019D34743)

HSP 1 Score: 171 bits (433), Expect = 2.140e-50
Identity = 93/129 (72.09%), Postives = 107/129 (82.95%), Query Frame = 1
Query:   67 AGGLARLFPLGIGGLSSMMGIGGGTFSVPVLTLLGLGIHRAVGTSALFGLLISVPGALAYVATGWGDARLPAGSLGYVSLPGLACIAPMTVLAAPLGARLAHRLSARQLNLAFGVFLVLVASRMLYRAL 453
            AG   +L P+ IGGLS MMGIGGGT SVP  T++G+ +HRAVGTSALFGLLI++PGA+ YV TGWGD RLP G+LGYVSL GL  IAPMTVL APLGA+LAH+LS R L LAFGVFL++VA RMLYRAL
Sbjct:  144 AGLAGKLPPVFIGGLSCMMGIGGGTLSVPAQTMMGIPMHRAVGTSALFGLLIALPGAVTYVVTGWGDPRLPVGNLGYVSLLGLCLIAPMTVLTAPLGAKLAHKLSQRHLTLAFGVFLLVVAVRMLYRAL 272          
BLAST of mRNA_L-digitata_M_contig100646.2.1 vs. uniprot
Match: A0A5C8ZSM1_9GAMM (Probable membrane transporter protein n=1 Tax=Parahaliea aestuarii TaxID=1852021 RepID=A0A5C8ZSM1_9GAMM)

HSP 1 Score: 166 bits (421), Expect = 1.230e-48
Identity = 91/128 (71.09%), Postives = 107/128 (83.59%), Query Frame = 1
Query:   70 GGL-ARLFPLGIGGLSSMMGIGGGTFSVPVLTLLGLGIHRAVGTSALFGLLISVPGALAYVATGWGDARLPAGSLGYVSLPGLACIAPMTVLAAPLGARLAHRLSARQLNLAFGVFLVLVASRMLYRA 450
            GGL  ++ PL IGGLS MMGIGGG+ SVP LT++ + +HRAVGTSALFGLLI+VPG L Y+ TGWGD RLP+G+LG+VSL GL  IAPMTVL APLGA+LAHRLS RQL+L FG FL+LV+ RMLYRA
Sbjct:  142 GGLPGKIPPLLIGGLSCMMGIGGGSLSVPALTMMSVPVHRAVGTSALFGLLIAVPGTLTYIVTGWGDPRLPSGNLGFVSLLGLVMIAPMTVLTAPLGAKLAHRLSQRQLSLFFGSFLLLVSLRMLYRA 269          
BLAST of mRNA_L-digitata_M_contig100646.2.1 vs. uniprot
Match: A0A5C9A5G4_9GAMM (Probable membrane transporter protein n=1 Tax=Parahaliea maris TaxID=2716870 RepID=A0A5C9A5G4_9GAMM)

HSP 1 Score: 166 bits (420), Expect = 1.840e-48
Identity = 89/127 (70.08%), Postives = 107/127 (84.25%), Query Frame = 1
Query:   70 GGLA-RLFPLGIGGLSSMMGIGGGTFSVPVLTLLGLGIHRAVGTSALFGLLISVPGALAYVATGWGDARLPAGSLGYVSLPGLACIAPMTVLAAPLGARLAHRLSARQLNLAFGVFLVLVASRMLYR 447
            GGLA +L P+ IGGLS MMGIGGG+ +VP LTL+ + +HRAVGTSALFGLLI+VPG + Y+ATGWGD RLP G+LG+VSL GL  IAPMTVL APLGA++AHRL+ RQL+L FG FL+LV+ RMLYR
Sbjct:  144 GGLAGKLPPVAIGGLSCMMGIGGGSLTVPALTLMSVPVHRAVGTSALFGLLIAVPGTITYIATGWGDLRLPVGNLGFVSLLGLVFIAPMTVLTAPLGAKIAHRLNQRQLSLVFGSFLLLVSIRMLYR 270          
BLAST of mRNA_L-digitata_M_contig100646.2.1 vs. uniprot
Match: A0A7W2TVD0_9GAMM (Probable membrane transporter protein n=1 Tax=Sediminihaliea albiluteola TaxID=2758564 RepID=A0A7W2TVD0_9GAMM)

HSP 1 Score: 165 bits (418), Expect = 3.690e-48
Identity = 90/129 (69.77%), Postives = 106/129 (82.17%), Query Frame = 1
Query:   67 AGGLARLFPLGIGGLSSMMGIGGGTFSVPVLTLLGLGIHRAVGTSALFGLLISVPGALAYVATGWGDARLPAGSLGYVSLPGLACIAPMTVLAAPLGARLAHRLSARQLNLAFGVFLVLVASRMLYRAL 453
            AG L +L  + IG LSSM+GIGGGT SVP LT++   +HRAVGTSALFGLLIS+PGALAYV TGW D R+P G+LGYVS+ GLA IAPMTVL APLGA+ +HRLS + L+ AFGVFLVL+A RM+YRAL
Sbjct:  144 AGLLGKLPAVAIGALSSMIGIGGGTLSVPTLTMMSTPMHRAVGTSALFGLLISLPGALAYVLTGWNDPRVPFGNLGYVSVIGLALIAPMTVLTAPLGAKFSHRLSQQHLSFAFGVFLVLIAGRMIYRAL 272          
BLAST of mRNA_L-digitata_M_contig100646.2.1 vs. uniprot
Match: UPI000E2FA311 (sulfite exporter TauE/SafE family protein n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI000E2FA311)

HSP 1 Score: 165 bits (418), Expect = 3.790e-48
Identity = 96/154 (62.34%), Postives = 118/154 (76.62%), Query Frame = 1
Query:    1 VLLGLRMLLFGGRNPAPGRELA---AGGL-ARLFPLGIGGLSSMMGIGGGTFSVPVLTLLGLGIHRAVGTSALFGLLISVPGALAYVATGWGDARLPAGSLGYVSLPGLACIAPMTVLAAPLGARLAHRLSARQLNLAFGVFLVLVASRMLYRA 450
            +L+ L+M+L     P     L+    GGL  ++ P+ IGGLS MMGIGGG+ SVP LT++ + +HRAVGTSALFGLLI+VPGAL YV TGWGD RLP+G+LGYVSL GL  IAP TVLAAPLGA+LAH+L  RQL+L FG FL++V+ RMLYRA
Sbjct:  123 ILVALKMVL-----PTDNLRLSNHVPGGLPGKIPPVLIGGLSCMMGIGGGSLSVPALTMMSVPVHRAVGTSALFGLLIAVPGALTYVITGWGDPRLPSGNLGYVSLLGLCLIAPTTVLAAPLGAKLAHKLDQRQLSLVFGSFLLIVSIRMLYRA 271          
BLAST of mRNA_L-digitata_M_contig100646.2.1 vs. uniprot
Match: UPI0016691F81 (sulfite exporter TauE/SafE family protein n=3 Tax=Alteromonadaceae TaxID=72275 RepID=UPI0016691F81)

HSP 1 Score: 164 bits (414), Expect = 1.520e-47
Identity = 94/151 (62.25%), Postives = 115/151 (76.16%), Query Frame = 1
Query:    1 VLLGLRMLLFGGRNPAPGRELAAGGLARLFPLGIGGLSSMMGIGGGTFSVPVLTLLGLGIHRAVGTSALFGLLISVPGALAYVATGWGDARLPAGSLGYVSLPGLACIAPMTVLAAPLGARLAHRLSARQLNLAFGVFLVLVASRMLYRAL 453
            +L+ L+MLL    N    R++  G  A   PL IGGLSSMMGIGGGT SVPVLTL+   IHRAVGT+ALFGLLIS+PGA  +  +GWGD+RLP GSLGY++L G+A IAP+TV+ AP GA+LAHRL  R+L++ FG FL+LVA RMLYR L
Sbjct:  123 LLVALKMLL-PLDNLILSRDVPRGLAAPFPPLAIGGLSSMMGIGGGTLSVPVLTLMNQPIHRAVGTAALFGLLISLPGAFGFAYSGWGDSRLPPGSLGYINLIGVALIAPVTVVMAPFGAKLAHRLDKRRLSMLFGFFLLLVAGRMLYRTL 272          
BLAST of mRNA_L-digitata_M_contig100646.2.1 vs. uniprot
Match: A0A520WXL8_9GAMM (Probable membrane transporter protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A520WXL8_9GAMM)

HSP 1 Score: 162 bits (409), Expect = 7.710e-47
Identity = 93/151 (61.59%), Postives = 110/151 (72.85%), Query Frame = 1
Query:    1 VLLGLRMLLF-GGRNPAPGRELAAGGLARLFPLGIGGLSSMMGIGGGTFSVPVLTLLGLGIHRAVGTSALFGLLISVPGALAYVATGWGDARLPAGSLGYVSLPGLACIAPMTVLAAPLGARLAHRLSARQLNLAFGVFLVLVASRMLYRA 450
            +L+ ++MLLF   RN      +  G L  + P+ IG  SSMMGIGGGTFSV  LTL    IHRAVGT+ALFGL+IS+PG L +VA GW D RLP GSLGYVSL G ACIAP TVLAAPLGAR+AH  SAR+LN+ FG FL+L + R+ YRA
Sbjct:  120 LLVAIKMLLFPDSRNLTD--AVPRGPLVTVIPVSIGCFSSMMGIGGGTFSVMTLTLFNEPIHRAVGTAALFGLVISLPGMLGFVAAGWADPRLPPGSLGYVSLVGFACIAPATVLAAPLGARIAHGFSARRLNMLFGAFLILASLRLFYRA 268          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100646.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7C410_9GAMM2.170e-8794.04Probable membrane transporter protein n=9 Tax=Hali... [more]
A0A2N5Y5R5_9GAMM6.670e-6776.82Probable membrane transporter protein n=1 Tax=Kine... [more]
A0A2D5FFU2_9GAMM1.030e-5872.67Probable membrane transporter protein n=1 Tax=Hali... [more]
UPI0019D347432.140e-5072.09sulfite exporter TauE/SafE family protein n=1 Tax=... [more]
A0A5C8ZSM1_9GAMM1.230e-4871.09Probable membrane transporter protein n=1 Tax=Para... [more]
A0A5C9A5G4_9GAMM1.840e-4870.08Probable membrane transporter protein n=1 Tax=Para... [more]
A0A7W2TVD0_9GAMM3.690e-4869.77Probable membrane transporter protein n=1 Tax=Sedi... [more]
UPI000E2FA3113.790e-4862.34sulfite exporter TauE/SafE family protein n=1 Tax=... [more]
UPI0016691F811.520e-4762.25sulfite exporter TauE/SafE family protein n=3 Tax=... [more]
A0A520WXL8_9GAMM7.710e-4761.59Probable membrane transporter protein n=1 Tax=Chro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100646contigL-digitata_M_contig100646:482..937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121937.AUHJ01000011_gene2868
PFAMsTauE
Model size456
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.31e-86
EggNOG OGsCOG0730@1|root,COG0730@2|Bacteria,1R3V4@1224|Proteobacteria,1RVNC@1236|Gammaproteobacteria,466C9@72275|Alteromonadaceae
Descriptionmembrane transporter protein
Cds size438
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406608.9761078-CDS-L-digitata_M_contig100646:481..9191682406608.9761078-CDS-L-digitata_M_contig100646:481..919Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100646 482..919 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406608.9981558-UTR-L-digitata_M_contig100646:919..9371682406608.9981558-UTR-L-digitata_M_contig100646:919..937Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100646 920..937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100646.2.1prot_L-digitata_M_contig100646.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100646 482..919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100646.2.1

>prot_L-digitata_M_contig100646.2.1 ID=prot_L-digitata_M_contig100646.2.1|Name=mRNA_L-digitata_M_contig100646.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=146bp
MLLFGGRNPAPGRELAAGGLARLFPLGIGGLSSMMGIGGGTFSVPVLTLL
GLGIHRAVGTSALFGLLISVPGALAYVATGWGDARLPAGSLGYVSLPGLA
CIAPMTVLAAPLGARLAHRLSARQLNLAFGVFLVLVASRMLYRAL*
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mRNA from alignment at L-digitata_M_contig100646:482..937-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100646.2.1 ID=mRNA_L-digitata_M_contig100646.2.1|Name=mRNA_L-digitata_M_contig100646.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=456bp|location=Sequence derived from alignment at L-digitata_M_contig100646:482..937- (Laminaria digitata LdigPH10_18mv male)
GTATTGCTCGGCCTGCGCATGCTGCTGTTTGGCGGTCGCAACCCCGCGCC TGGCCGCGAGCTGGCAGCAGGTGGGCTGGCGCGACTCTTCCCGCTGGGCA TCGGCGGCTTGTCGAGCATGATGGGTATTGGCGGCGGCACCTTCAGTGTG CCTGTGTTGACCCTGCTCGGGCTCGGCATACATCGTGCGGTCGGTACGTC CGCCCTGTTCGGTTTGTTGATCAGTGTGCCTGGCGCGCTGGCCTATGTTG CTACCGGCTGGGGTGATGCGCGTCTGCCGGCGGGGAGCCTGGGGTATGTC AGCCTGCCCGGCCTCGCCTGCATCGCCCCCATGACGGTGCTGGCGGCGCC ACTGGGTGCCAGGCTGGCGCACCGGCTCAGCGCGCGTCAGCTCAACCTGG CGTTTGGCGTGTTTCTGGTGCTGGTGGCCAGCCGCATGCTGTACCGCGCG CTCTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100646:482..937-

>mRNA_L-digitata_M_contig100646.2.1 ID=mRNA_L-digitata_M_contig100646.2.1|Name=mRNA_L-digitata_M_contig100646.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=438bp|location=Sequence derived from alignment at L-digitata_M_contig100646:482..937- (Laminaria digitata LdigPH10_18mv male)
ATGCTGCTGTTTGGCGGTCGCAACCCCGCGCCTGGCCGCGAGCTGGCAGC
AGGTGGGCTGGCGCGACTCTTCCCGCTGGGCATCGGCGGCTTGTCGAGCA
TGATGGGTATTGGCGGCGGCACCTTCAGTGTGCCTGTGTTGACCCTGCTC
GGGCTCGGCATACATCGTGCGGTCGGTACGTCCGCCCTGTTCGGTTTGTT
GATCAGTGTGCCTGGCGCGCTGGCCTATGTTGCTACCGGCTGGGGTGATG
CGCGTCTGCCGGCGGGGAGCCTGGGGTATGTCAGCCTGCCCGGCCTCGCC
TGCATCGCCCCCATGACGGTGCTGGCGGCGCCACTGGGTGCCAGGCTGGC
GCACCGGCTCAGCGCGCGTCAGCTCAACCTGGCGTTTGGCGTGTTTCTGG
TGCTGGTGGCCAGCCGCATGCTGTACCGCGCGCTCTAG
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