mRNA_L-digitata_M_contig100646.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100646.1.1
Unique NamemRNA_L-digitata_M_contig100646.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: A0A3C1KPS4_9GAMM (Universal stress protein UspA n=9 Tax=Halieaceae TaxID=1706372 RepID=A0A3C1KPS4_9GAMM)

HSP 1 Score: 283 bits (723), Expect = 3.190e-94
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 1
Query:    1 AAEQHAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
            AAEQHAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLS+EQQRQV+EATA LS AGF+VTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR
Sbjct:  132 AAEQHAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSEEQQRQVSEATATLSGAGFSVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 283          
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: A0A2N5Y5W0_9GAMM (Universal stress protein UspA n=2 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y5W0_9GAMM)

HSP 1 Score: 214 bits (545), Expect = 3.300e-67
Identity = 110/151 (72.85%), Postives = 126/151 (83.44%), Query Frame = 1
Query:    4 AEQHAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
            AE  AIGSHLESVVR + RPILV +R F  P+ FMIA+DGS TA KAL+ VA SPLL GLPCHLV+VGP+S EQ RQ+ +A  +L+AAGF VTTAT+EGEVQ AL  YHREQ +DLMVMGAWGHSRIRQFFVGSNTTRMLS +++TLLLLR
Sbjct:  133 AEAEAIGSHLESVVRSVHRPILVVMREFIEPKRFMIAYDGSATASKALNLVANSPLLTGLPCHLVTVGPVSAEQTRQIGQARDSLTAAGFEVTTATVEGEVQAALGAYHREQGIDLMVMGAWGHSRIRQFFVGSNTTRMLSHSDITLLLLR 283          
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: A0A6C0U1C2_9GAMM (Universal stress protein n=1 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0U1C2_9GAMM)

HSP 1 Score: 209 bits (531), Expect = 4.350e-65
Identity = 107/150 (71.33%), Postives = 124/150 (82.67%), Query Frame = 1
Query:    7 EQHAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
            E   IGSHLESVVRR+ RPI+V +  F  PR FMIA+DGS+TA +AL+ VAGSPLL GLPCHLV+VGPLS+E+  QV  A   L AAGF VT+A LEGEVQ AL++YHREQ +DLMVMGAWGHSRIRQFFVGSNTTRMLS +++TLLLLR
Sbjct:  134 EAQTIGSHLESVVRRVHRPIMVVMHEFAEPRRFMIAYDGSETAGEALALVAGSPLLRGLPCHLVTVGPLSEERAGQVRGARDTLVAAGFEVTSANLEGEVQAALSQYHREQAIDLMVMGAWGHSRIRQFFVGSNTTRMLSHSDITLLLLR 283          
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: A0A222FJF2_9GAMM (Universal stress protein UspA n=1 Tax=Bacterioplanes sanyensis TaxID=1249553 RepID=A0A222FJF2_9GAMM)

HSP 1 Score: 177 bits (450), Expect = 7.370e-53
Identity = 91/152 (59.87%), Postives = 118/152 (77.63%), Query Frame = 1
Query:    1 AAEQHAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
            A+  HA+GSHLE+VVR  +RP+LVT+  F  P+ FM+AFDGSDTAQKAL   + SPLL GLPCHLV VG   D  Q+ +++A A L + GF VT A L+GEVQ AL++Y ++  +DLMVMGA+GHSRIRQFFVGS+T +M+SQ+++ LLLLR
Sbjct:  131 ASLDHALGSHLEAVVRGCERPLLVTVGDFSAPKRFMVAFDGSDTAQKALDAYSQSPLLQGLPCHLVMVGHDDDAHQQLLDKAAAQLQSHGFEVTVAKLQGEVQPALSQYQQDHNIDLMVMGAYGHSRIRQFFVGSHTRKMVSQSDVPLLLLR 282          
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: A0A2C9CCX3_KUEST (Uncharacterized protein n=2 Tax=Kuenenia stuttgartiensis TaxID=174633 RepID=A0A2C9CCX3_KUEST)

HSP 1 Score: 174 bits (442), Expect = 1.220e-51
Identity = 91/148 (61.49%), Postives = 110/148 (74.32%), Query Frame = 1
Query:   13 HAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
            H IGS+LE+V+R I +PIL+ L  F PP  FMIAFDGS TAQKAL  VAGSPLL GLPCHL+ V   +DE++ Q+  A   L +AGF VT  TLEG+V+ AL  Y +E Q+DLMVMGA+GHSRIRQF  GSNTT ML  +++ LLLLR
Sbjct:  136 HPIGSNLENVIRTIHKPILIVLSKFSPPNCFMIAFDGSPTAQKALDMVAGSPLLKGLPCHLIMVCSGTDERKAQLESAFDKLVSAGFDVTQKTLEGKVEAALGTYQKENQIDLMVMGAYGHSRIRQFLAGSNTTAMLRTSDIPLLLLR 283          
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: A0A261GVN1_9GAMM (Universal stress protein UspA n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GVN1_9GAMM)

HSP 1 Score: 172 bits (436), Expect = 9.790e-51
Identity = 87/148 (58.78%), Postives = 113/148 (76.35%), Query Frame = 1
Query:   13 HAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
            H +GSHLE+VVR + RPILVT+++F  P  FM A+D S+TA+KALS+V+ SPLL GLPCHLV VG  + E ++Q+  A   L+ AGF VT   LEG+VQ  L  Y ++  +DLMVMGA+GHSRIRQFFVGSNTT+M+S ++ +LLLLR
Sbjct:  136 HTLGSHLENVVRTVHRPILVTVQSFVRPNRFMFAYDASETAEKALSKVSTSPLLKGLPCHLVMVGQDTPEHRQQLANANQKLTVAGFDVTQMLLEGDVQQTLQSYQKQHDIDLMVMGAYGHSRIRQFFVGSNTTKMVSGSDTSLLLLR 283          
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: UPI0003783987 (universal stress protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI0003783987)

HSP 1 Score: 171 bits (433), Expect = 2.770e-50
Identity = 85/148 (57.43%), Postives = 116/148 (78.38%), Query Frame = 1
Query:   13 HAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
            H +GSHLESVVR + RPILVT++ F  P  F+ A+D S+TA+KAL++++ SPLL  LPCHLV VG  + E ++Q+  A   LS AGF VT A +EG+VQ +L+ Y +E ++DLMVMGA+GHSRIRQFFVGSNT++M+S ++++LLLLR
Sbjct:  136 HTLGSHLESVVRAVHRPILVTVQNFVRPARFLFAYDASETAEKALAKISISPLLKDLPCHLVMVGQDTSEHRQQLANANQKLSVAGFDVTQALIEGDVQQSLHNYQKEHEIDLMVMGAYGHSRIRQFFVGSNTSKMVSASDISLLLLR 283          
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: UPI00200FA69A (universal stress protein n=1 Tax=Shewanella profunda TaxID=254793 RepID=UPI00200FA69A)

HSP 1 Score: 169 bits (427), Expect = 2.280e-49
Identity = 92/155 (59.35%), Postives = 113/155 (72.90%), Query Frame = 1
Query:    7 EQH-----AIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
            EQH     AIGSHLESV+R +++PILV +  F+ P+ FMIA+DGS TA+KAL+RVA SPLL GL CHLV V     +   ++N  T AL  A F V TA  +GEVQTAL  Y    Q+DLMVMGA+GHSRIR+FFVGSNTTRM+S++ + LLLLR
Sbjct:  130 EQHQDQAQAIGSHLESVIRTLKQPILVVMAEFQAPKRFMIAYDGSATAKKALNRVATSPLLKGLECHLVMVSDNQSQAITELNLVTEALLQANFNVITAVCQGEVQTALEAYQVAHQIDLMVMGAYGHSRIREFFVGSNTTRMISKSHIPLLLLR 284          
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: A0A380A4S6_9GAMM (Universal stress protein UspG n=5 Tax=Shewanella TaxID=22 RepID=A0A380A4S6_9GAMM)

HSP 1 Score: 168 bits (426), Expect = 3.140e-49
Identity = 88/155 (56.77%), Postives = 113/155 (72.90%), Query Frame = 1
Query:    7 EQH-----AIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
            EQH     AIGSHLESV+R +++PILV +  F  P+ FMIA+DGSDTA+K ++RV  SPLL GL CHLV V     +++  +    A+L+ A F V TA  +GEVQTAL  Y +E  +DLMVMGA+GHSRIR+FFVGSNTTRM+S++ + LLLLR
Sbjct:  129 EQHQEQTKAIGSHLESVIRTLKQPILVVMAEFEAPKRFMIAYDGSDTAKKVINRVISSPLLKGLECHLVIVSSNQSQEEAGLASVAASLTEADFNVVTAVCQGEVQTALEVYQQENHIDLMVMGAYGHSRIREFFVGSNTTRMISKSHIPLLLLR 283          
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: UPI00167A7FF7 (universal stress protein n=1 Tax=Bacterioplanes sanyensis TaxID=1249553 RepID=UPI00167A7FF7)

HSP 1 Score: 168 bits (426), Expect = 3.410e-49
Identity = 88/148 (59.46%), Postives = 107/148 (72.30%), Query Frame = 1
Query:   13 HAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
            H +GSHLE+VVR    P+LVT+  F+ P  FM+AFDGSDTAQKAL   + SPLL  LPCHLV VG   D  Q+Q+  A   L   GF VT A L GEVQ AL +Y +E  +DLMVMGA+GHSRIRQFFVGS+T +M+SQ+++ LLLLR
Sbjct:  139 HTLGSHLEAVVRGCDSPLLVTVGEFKTPERFMVAFDGSDTAQKALDAYSQSPLLKDLPCHLVMVGHDDDAHQQQLQSAAQQLREQGFDVTVAHLHGEVQPALAQYQQEHSIDLMVMGAYGHSRIRQFFVGSHTRKMVSQSDIPLLLLR 286          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C1KPS4_9GAMM3.190e-9496.71Universal stress protein UspA n=9 Tax=Halieaceae T... [more]
A0A2N5Y5W0_9GAMM3.300e-6772.85Universal stress protein UspA n=2 Tax=Kineobactrum... [more]
A0A6C0U1C2_9GAMM4.350e-6571.33Universal stress protein n=1 Tax=Kineobactrum sali... [more]
A0A222FJF2_9GAMM7.370e-5359.87Universal stress protein UspA n=1 Tax=Bacterioplan... [more]
A0A2C9CCX3_KUEST1.220e-5161.49Uncharacterized protein n=2 Tax=Kuenenia stuttgart... [more]
A0A261GVN1_9GAMM9.790e-5158.78Universal stress protein UspA n=1 Tax=Hahella sp. ... [more]
UPI00037839872.770e-5057.43universal stress protein n=1 Tax=Hahella ganghwens... [more]
UPI00200FA69A2.280e-4959.35universal stress protein n=1 Tax=Shewanella profun... [more]
A0A380A4S6_9GAMM3.140e-4956.77Universal stress protein UspG n=5 Tax=Shewanella T... [more]
UPI00167A7FF73.410e-4959.46universal stress protein n=1 Tax=Bacterioplanes sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100646contigL-digitata_M_contig100646:3..461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1121937.AUHJ01000011_gene2869
PFAMsUsp
Model size459
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.59e-95
EggNOG OGsCOG0589@1|root,COG0589@2|Bacteria,1PAFP@1224|Proteobacteria,1RSCS@1236|Gammaproteobacteria,465CE@72275|Alteromonadaceae
DescriptionCOG0589 Universal stress protein UspA and related nucleotide-binding proteins
Cds size459
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406608.9408362-CDS-L-digitata_M_contig100646:2..4611682406608.9408362-CDS-L-digitata_M_contig100646:2..461Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100646 3..461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100646.1.1prot_L-digitata_M_contig100646.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100646 3..461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100646.1.1

>prot_L-digitata_M_contig100646.1.1 ID=prot_L-digitata_M_contig100646.1.1|Name=mRNA_L-digitata_M_contig100646.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=153bp
AAEQHAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALS
RVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEG
EVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLL
LR*
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mRNA from alignment at L-digitata_M_contig100646:3..461+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100646.1.1 ID=mRNA_L-digitata_M_contig100646.1.1|Name=mRNA_L-digitata_M_contig100646.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=459bp|location=Sequence derived from alignment at L-digitata_M_contig100646:3..461+ (Laminaria digitata LdigPH10_18mv male)
GCCGCTGAACAGCACGCCATCGGCTCTCACCTGGAAAGTGTGGTGCGCCG CATTCAGCGCCCTATCCTCGTTACGTTGCGGGCGTTTCGCCCACCCCGCT CTTTCATGATTGCCTTCGACGGCAGCGACACGGCACAGAAAGCCCTGAGT CGCGTGGCGGGCAGCCCGCTGCTGGCCGGTCTCCCCTGTCACCTGGTATC CGTGGGGCCTCTCTCAGATGAGCAACAGCGACAGGTGAACGAGGCGACAG CAGCCCTTTCCGCTGCAGGCTTTACCGTGACTACCGCAACACTCGAGGGC GAGGTGCAAACCGCACTCAACCGCTACCACCGTGAACAACAGGTGGACCT GATGGTTATGGGGGCCTGGGGCCACTCACGGATTCGCCAGTTCTTTGTCG GCAGCAACACCACGCGCATGCTCAGCCAGGCGGAGATGACCCTGCTACTG CTGCGCTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100646:3..461+

>mRNA_L-digitata_M_contig100646.1.1 ID=mRNA_L-digitata_M_contig100646.1.1|Name=mRNA_L-digitata_M_contig100646.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=459bp|location=Sequence derived from alignment at L-digitata_M_contig100646:3..461+ (Laminaria digitata LdigPH10_18mv male)
GCCGCTGAACAGCACGCCATCGGCTCTCACCTGGAAAGTGTGGTGCGCCG
CATTCAGCGCCCTATCCTCGTTACGTTGCGGGCGTTTCGCCCACCCCGCT
CTTTCATGATTGCCTTCGACGGCAGCGACACGGCACAGAAAGCCCTGAGT
CGCGTGGCGGGCAGCCCGCTGCTGGCCGGTCTCCCCTGTCACCTGGTATC
CGTGGGGCCTCTCTCAGATGAGCAACAGCGACAGGTGAACGAGGCGACAG
CAGCCCTTTCCGCTGCAGGCTTTACCGTGACTACCGCAACACTCGAGGGC
GAGGTGCAAACCGCACTCAACCGCTACCACCGTGAACAACAGGTGGACCT
GATGGTTATGGGGGCCTGGGGCCACTCACGGATTCGCCAGTTCTTTGTCG
GCAGCAACACCACGCGCATGCTCAGCCAGGCGGAGATGACCCTGCTACTG
CTGCGCTAG
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