mRNA_L-digitata_M_contig100646.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: A0A3C1KPS4_9GAMM (Universal stress protein UspA n=9 Tax=Halieaceae TaxID=1706372 RepID=A0A3C1KPS4_9GAMM) HSP 1 Score: 283 bits (723), Expect = 3.190e-94 Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 1
Query: 1 AAEQHAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
AAEQHAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLS+EQQRQV+EATA LS AGF+VTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR
Sbjct: 132 AAEQHAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSEEQQRQVSEATATLSGAGFSVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 283
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: A0A2N5Y5W0_9GAMM (Universal stress protein UspA n=2 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y5W0_9GAMM) HSP 1 Score: 214 bits (545), Expect = 3.300e-67 Identity = 110/151 (72.85%), Postives = 126/151 (83.44%), Query Frame = 1
Query: 4 AEQHAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
AE AIGSHLESVVR + RPILV +R F P+ FMIA+DGS TA KAL+ VA SPLL GLPCHLV+VGP+S EQ RQ+ +A +L+AAGF VTTAT+EGEVQ AL YHREQ +DLMVMGAWGHSRIRQFFVGSNTTRMLS +++TLLLLR
Sbjct: 133 AEAEAIGSHLESVVRSVHRPILVVMREFIEPKRFMIAYDGSATASKALNLVANSPLLTGLPCHLVTVGPVSAEQTRQIGQARDSLTAAGFEVTTATVEGEVQAALGAYHREQGIDLMVMGAWGHSRIRQFFVGSNTTRMLSHSDITLLLLR 283
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: A0A6C0U1C2_9GAMM (Universal stress protein n=1 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0U1C2_9GAMM) HSP 1 Score: 209 bits (531), Expect = 4.350e-65 Identity = 107/150 (71.33%), Postives = 124/150 (82.67%), Query Frame = 1
Query: 7 EQHAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
E IGSHLESVVRR+ RPI+V + F PR FMIA+DGS+TA +AL+ VAGSPLL GLPCHLV+VGPLS+E+ QV A L AAGF VT+A LEGEVQ AL++YHREQ +DLMVMGAWGHSRIRQFFVGSNTTRMLS +++TLLLLR
Sbjct: 134 EAQTIGSHLESVVRRVHRPIMVVMHEFAEPRRFMIAYDGSETAGEALALVAGSPLLRGLPCHLVTVGPLSEERAGQVRGARDTLVAAGFEVTSANLEGEVQAALSQYHREQAIDLMVMGAWGHSRIRQFFVGSNTTRMLSHSDITLLLLR 283
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: A0A222FJF2_9GAMM (Universal stress protein UspA n=1 Tax=Bacterioplanes sanyensis TaxID=1249553 RepID=A0A222FJF2_9GAMM) HSP 1 Score: 177 bits (450), Expect = 7.370e-53 Identity = 91/152 (59.87%), Postives = 118/152 (77.63%), Query Frame = 1
Query: 1 AAEQHAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
A+ HA+GSHLE+VVR +RP+LVT+ F P+ FM+AFDGSDTAQKAL + SPLL GLPCHLV VG D Q+ +++A A L + GF VT A L+GEVQ AL++Y ++ +DLMVMGA+GHSRIRQFFVGS+T +M+SQ+++ LLLLR
Sbjct: 131 ASLDHALGSHLEAVVRGCERPLLVTVGDFSAPKRFMVAFDGSDTAQKALDAYSQSPLLQGLPCHLVMVGHDDDAHQQLLDKAAAQLQSHGFEVTVAKLQGEVQPALSQYQQDHNIDLMVMGAYGHSRIRQFFVGSHTRKMVSQSDVPLLLLR 282
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: A0A2C9CCX3_KUEST (Uncharacterized protein n=2 Tax=Kuenenia stuttgartiensis TaxID=174633 RepID=A0A2C9CCX3_KUEST) HSP 1 Score: 174 bits (442), Expect = 1.220e-51 Identity = 91/148 (61.49%), Postives = 110/148 (74.32%), Query Frame = 1
Query: 13 HAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
H IGS+LE+V+R I +PIL+ L F PP FMIAFDGS TAQKAL VAGSPLL GLPCHL+ V +DE++ Q+ A L +AGF VT TLEG+V+ AL Y +E Q+DLMVMGA+GHSRIRQF GSNTT ML +++ LLLLR
Sbjct: 136 HPIGSNLENVIRTIHKPILIVLSKFSPPNCFMIAFDGSPTAQKALDMVAGSPLLKGLPCHLIMVCSGTDERKAQLESAFDKLVSAGFDVTQKTLEGKVEAALGTYQKENQIDLMVMGAYGHSRIRQFLAGSNTTAMLRTSDIPLLLLR 283
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: A0A261GVN1_9GAMM (Universal stress protein UspA n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GVN1_9GAMM) HSP 1 Score: 172 bits (436), Expect = 9.790e-51 Identity = 87/148 (58.78%), Postives = 113/148 (76.35%), Query Frame = 1
Query: 13 HAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
H +GSHLE+VVR + RPILVT+++F P FM A+D S+TA+KALS+V+ SPLL GLPCHLV VG + E ++Q+ A L+ AGF VT LEG+VQ L Y ++ +DLMVMGA+GHSRIRQFFVGSNTT+M+S ++ +LLLLR
Sbjct: 136 HTLGSHLENVVRTVHRPILVTVQSFVRPNRFMFAYDASETAEKALSKVSTSPLLKGLPCHLVMVGQDTPEHRQQLANANQKLTVAGFDVTQMLLEGDVQQTLQSYQKQHDIDLMVMGAYGHSRIRQFFVGSNTTKMVSGSDTSLLLLR 283
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: UPI0003783987 (universal stress protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI0003783987) HSP 1 Score: 171 bits (433), Expect = 2.770e-50 Identity = 85/148 (57.43%), Postives = 116/148 (78.38%), Query Frame = 1
Query: 13 HAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
H +GSHLESVVR + RPILVT++ F P F+ A+D S+TA+KAL++++ SPLL LPCHLV VG + E ++Q+ A LS AGF VT A +EG+VQ +L+ Y +E ++DLMVMGA+GHSRIRQFFVGSNT++M+S ++++LLLLR
Sbjct: 136 HTLGSHLESVVRAVHRPILVTVQNFVRPARFLFAYDASETAEKALAKISISPLLKDLPCHLVMVGQDTSEHRQQLANANQKLSVAGFDVTQALIEGDVQQSLHNYQKEHEIDLMVMGAYGHSRIRQFFVGSNTSKMVSASDISLLLLR 283
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: UPI00200FA69A (universal stress protein n=1 Tax=Shewanella profunda TaxID=254793 RepID=UPI00200FA69A) HSP 1 Score: 169 bits (427), Expect = 2.280e-49 Identity = 92/155 (59.35%), Postives = 113/155 (72.90%), Query Frame = 1
Query: 7 EQH-----AIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
EQH AIGSHLESV+R +++PILV + F+ P+ FMIA+DGS TA+KAL+RVA SPLL GL CHLV V + ++N T AL A F V TA +GEVQTAL Y Q+DLMVMGA+GHSRIR+FFVGSNTTRM+S++ + LLLLR
Sbjct: 130 EQHQDQAQAIGSHLESVIRTLKQPILVVMAEFQAPKRFMIAYDGSATAKKALNRVATSPLLKGLECHLVMVSDNQSQAITELNLVTEALLQANFNVITAVCQGEVQTALEAYQVAHQIDLMVMGAYGHSRIREFFVGSNTTRMISKSHIPLLLLR 284
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: A0A380A4S6_9GAMM (Universal stress protein UspG n=5 Tax=Shewanella TaxID=22 RepID=A0A380A4S6_9GAMM) HSP 1 Score: 168 bits (426), Expect = 3.140e-49 Identity = 88/155 (56.77%), Postives = 113/155 (72.90%), Query Frame = 1
Query: 7 EQH-----AIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
EQH AIGSHLESV+R +++PILV + F P+ FMIA+DGSDTA+K ++RV SPLL GL CHLV V +++ + A+L+ A F V TA +GEVQTAL Y +E +DLMVMGA+GHSRIR+FFVGSNTTRM+S++ + LLLLR
Sbjct: 129 EQHQEQTKAIGSHLESVIRTLKQPILVVMAEFEAPKRFMIAYDGSDTAKKVINRVISSPLLKGLECHLVIVSSNQSQEEAGLASVAASLTEADFNVVTAVCQGEVQTALEVYQQENHIDLMVMGAYGHSRIREFFVGSNTTRMISKSHIPLLLLR 283
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Match: UPI00167A7FF7 (universal stress protein n=1 Tax=Bacterioplanes sanyensis TaxID=1249553 RepID=UPI00167A7FF7) HSP 1 Score: 168 bits (426), Expect = 3.410e-49 Identity = 88/148 (59.46%), Postives = 107/148 (72.30%), Query Frame = 1
Query: 13 HAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSRVAGSPLLAGLPCHLVSVGPLSDEQQRQVNEATAALSAAGFTVTTATLEGEVQTALNRYHREQQVDLMVMGAWGHSRIRQFFVGSNTTRMLSQAEMTLLLLR 456
H +GSHLE+VVR P+LVT+ F+ P FM+AFDGSDTAQKAL + SPLL LPCHLV VG D Q+Q+ A L GF VT A L GEVQ AL +Y +E +DLMVMGA+GHSRIRQFFVGS+T +M+SQ+++ LLLLR
Sbjct: 139 HTLGSHLEAVVRGCDSPLLVTVGEFKTPERFMVAFDGSDTAQKALDAYSQSPLLKDLPCHLVMVGHDDDAHQQQLQSAAQQLREQGFDVTVAHLHGEVQPALAQYQQEHSIDLMVMGAYGHSRIRQFFVGSHTRKMVSQSDIPLLLLR 286 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100646.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100646.1.1 >prot_L-digitata_M_contig100646.1.1 ID=prot_L-digitata_M_contig100646.1.1|Name=mRNA_L-digitata_M_contig100646.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=153bp AAEQHAIGSHLESVVRRIQRPILVTLRAFRPPRSFMIAFDGSDTAQKALSback to top mRNA from alignment at L-digitata_M_contig100646:3..461+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100646.1.1 ID=mRNA_L-digitata_M_contig100646.1.1|Name=mRNA_L-digitata_M_contig100646.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=459bp|location=Sequence derived from alignment at L-digitata_M_contig100646:3..461+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100646:3..461+ >mRNA_L-digitata_M_contig100646.1.1 ID=mRNA_L-digitata_M_contig100646.1.1|Name=mRNA_L-digitata_M_contig100646.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=459bp|location=Sequence derived from alignment at L-digitata_M_contig100646:3..461+ (Laminaria digitata LdigPH10_18mv male)back to top |