mRNA_L-digitata_M_contig100610.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100610.1.1
Unique NamemRNA_L-digitata_M_contig100610.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100610.1.1 vs. uniprot
Match: D8LKM6_ECTSI (Enoyl-CoA hydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM6_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.730e-12
Identity = 30/36 (83.33%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 GWGGTQRLVRAVGKSKAMQMVLTGSRLDAHQAERDG 108
            GWGGTQRL+RAVGKSKAM+MVLTG+++DAHQAER+G
Sbjct:  175 GWGGTQRLIRAVGKSKAMEMVLTGNQIDAHQAEREG 210
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BLAST of mRNA_L-digitata_M_contig100610.1.1 vs. uniprot
Match: A0A2D4CC62_PYTIN (Enoyl-CoA hydratase, mitochondrial n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CC62_PYTIN)

HSP 1 Score: 63.2 bits (152), Expect = 1.240e-10
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 GWGGTQRLVRAVGKSKAMQMVLTGSRLDAHQAERDG 108
            G GGTQRL+RAVGKSKAM+M+LTG+ +DAHQAERDG
Sbjct:  160 GCGGTQRLIRAVGKSKAMEMILTGNMIDAHQAERDG 195
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BLAST of mRNA_L-digitata_M_contig100610.1.1 vs. uniprot
Match: M4BV93_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BV93_HYAAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.280e-10
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 GWGGTQRLVRAVGKSKAMQMVLTGSRLDAHQAERDG 108
            G GGTQRL+RAVGKSKAM M+LTG  +DAHQAERDG
Sbjct:   70 GGGGTQRLIRAVGKSKAMDMILTGKMIDAHQAERDG 105
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BLAST of mRNA_L-digitata_M_contig100610.1.1 vs. uniprot
Match: A0A812XL95_SYMMI (Echs1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XL95_SYMMI)

HSP 1 Score: 62.4 bits (150), Expect = 2.430e-10
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 GWGGTQRLVRAVGKSKAMQMVLTGSRLDAHQAERDG 108
            G GGTQRL+RAVGK+KAM+MVLTG+ +DAHQAERDG
Sbjct:  164 GCGGTQRLIRAVGKAKAMEMVLTGNMIDAHQAERDG 199
[Close]
BLAST of mRNA_L-digitata_M_contig100610.1.1 vs. uniprot
Match: K3WPD4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPD4_GLOUD)

HSP 1 Score: 62.0 bits (149), Expect = 3.300e-10
Identity = 28/36 (77.78%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 GWGGTQRLVRAVGKSKAMQMVLTGSRLDAHQAERDG 108
            G GGTQRL+RAVGKSKAM+++LTG+ +DAHQAERDG
Sbjct:  161 GCGGTQRLIRAVGKSKAMELILTGNMIDAHQAERDG 196
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BLAST of mRNA_L-digitata_M_contig100610.1.1 vs. uniprot
Match: A0A5D6XQI8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQI8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.300e-10
Identity = 28/36 (77.78%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 GWGGTQRLVRAVGKSKAMQMVLTGSRLDAHQAERDG 108
            G GGTQRL+RAVGK+KAM+M+LTG+ +DAHQAERDG
Sbjct:  161 GCGGTQRLIRAVGKAKAMEMILTGNMIDAHQAERDG 196
[Close]
BLAST of mRNA_L-digitata_M_contig100610.1.1 vs. uniprot
Match: A0A0P1A5R9_PLAHL (Enoyl-hydratase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A5R9_PLAHL)

HSP 1 Score: 62.0 bits (149), Expect = 3.340e-10
Identity = 28/36 (77.78%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 GWGGTQRLVRAVGKSKAMQMVLTGSRLDAHQAERDG 108
            G GGTQRL+RAVGKSKAM+M+LTG+ +DAHQAE+DG
Sbjct:  163 GCGGTQRLIRAVGKSKAMEMILTGNMIDAHQAEKDG 198
[Close]
BLAST of mRNA_L-digitata_M_contig100610.1.1 vs. uniprot
Match: A0A2P4YGR4_9STRA (Enoyl-CoA hydratase, mitochondrial (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YGR4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.800e-10
Identity = 27/35 (77.14%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 GWGGTQRLVRAVGKSKAMQMVLTGSRLDAHQAERD 105
            G GGTQRL+RAVGK+KAM+M+LTG+ +DAHQAERD
Sbjct:   47 GCGGTQRLIRAVGKAKAMEMILTGNMIDAHQAERD 81
[Close]
BLAST of mRNA_L-digitata_M_contig100610.1.1 vs. uniprot
Match: A0A1V9YJB4_9STRA (Enoyl-CoA hydratase, mitochondrial (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YJB4_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 8.540e-10
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 GWGGTQRLVRAVGKSKAMQMVLTGSRLDAHQAERDGKLPPLSP 129
            G GGTQRLVRA+GKSKAM +VLTG  +DAHQAERDG +  + P
Sbjct:  404 GAGGTQRLVRAIGKSKAMHLVLTGDMIDAHQAERDGLVAKVVP 446
[Close]
BLAST of mRNA_L-digitata_M_contig100610.1.1 vs. uniprot
Match: A0A1V9Z2N9_9STRA (Enoyl-CoA hydratase, mitochondrial n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z2N9_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 8.600e-10
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 GWGGTQRLVRAVGKSKAMQMVLTGSRLDAHQAERDGKLPPLSP 129
            G GGTQRL+RA+GKSKAM +VLTG  +DAHQAERDG +  + P
Sbjct:  158 GAGGTQRLIRAIGKSKAMHLVLTGDMIDAHQAERDGLVAKVVP 200
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100610.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKM6_ECTSI2.730e-1283.33Enoyl-CoA hydratase n=1 Tax=Ectocarpus siliculosus... [more]
A0A2D4CC62_PYTIN1.240e-1080.56Enoyl-CoA hydratase, mitochondrial n=1 Tax=Pythium... [more]
M4BV93_HYAAE1.280e-1080.56Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A812XL95_SYMMI2.430e-1080.56Echs1 protein n=1 Tax=Symbiodinium microadriaticum... [more]
K3WPD4_GLOUD3.300e-1077.78Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XQI8_9STRA3.300e-1077.78Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A0P1A5R9_PLAHL3.340e-1077.78Enoyl-hydratase n=1 Tax=Plasmopara halstedii TaxID... [more]
A0A2P4YGR4_9STRA6.800e-1077.14Enoyl-CoA hydratase, mitochondrial (Fragment) n=1 ... [more]
A0A1V9YJB4_9STRA8.540e-1069.77Enoyl-CoA hydratase, mitochondrial (Fragment) n=1 ... [more]
A0A1V9Z2N9_9STRA8.600e-1067.44Enoyl-CoA hydratase, mitochondrial n=1 Tax=Thraust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100610contigL-digitata_M_contig100610:538..666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LKM6
PFAMsECH_1
Model size129
Max annot lvl2759|Eukaryota
KEGG rclassRC00770,RC00831,RC00834,RC01086,RC01095,RC01098,RC01103
KEGG koko:K07511
KEGG ReactionR02685,R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06942
KEGG Pathwayko00062,ko00071,ko00280,ko00310,ko00380,ko00410,ko00627,ko00640,ko00650,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00062,map00071,map00280,map00310,map00380,map00410,map00627,map00640,map00650,map00930,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00013,M00032,M00085,M00087
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.48e-13
EggNOG OGsCOG1024@1|root,KOG1680@2759|Eukaryota
EC4.2.1.17
Descriptionenoyl-CoA hydratase activity
Cds size129
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406608.7635744-CDS-L-digitata_M_contig100610:537..6661682406608.7635744-CDS-L-digitata_M_contig100610:537..666Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100610 538..666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100610.1.1prot_L-digitata_M_contig100610.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100610 538..666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100610.1.1

>prot_L-digitata_M_contig100610.1.1 ID=prot_L-digitata_M_contig100610.1.1|Name=mRNA_L-digitata_M_contig100610.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=43bp
GWGGTQRLVRAVGKSKAMQMVLTGSRLDAHQAERDGKLPPLSP
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mRNA from alignment at L-digitata_M_contig100610:538..666+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100610.1.1 ID=mRNA_L-digitata_M_contig100610.1.1|Name=mRNA_L-digitata_M_contig100610.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=129bp|location=Sequence derived from alignment at L-digitata_M_contig100610:538..666+ (Laminaria digitata LdigPH10_18mv male)
GGCTGGGGAGGCACTCAGCGGCTGGTACGAGCGGTCGGGAAGTCTAAGGC
GATGCAAATGGTCCTCACCGGGAGCCGACTGGACGCGCACCAAGCAGAGA
GAGACGGTAAGCTGCCCCCGCTCTCTCCT
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Coding sequence (CDS) from alignment at L-digitata_M_contig100610:538..666+

>mRNA_L-digitata_M_contig100610.1.1 ID=mRNA_L-digitata_M_contig100610.1.1|Name=mRNA_L-digitata_M_contig100610.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=129bp|location=Sequence derived from alignment at L-digitata_M_contig100610:538..666+ (Laminaria digitata LdigPH10_18mv male)
GGCTGGGGAGGCACTCAGCGGCTGGTACGAGCGGTCGGGAAGTCTAAGGC
GATGCAAATGGTCCTCACCGGGAGCCGACTGGACGCGCACCAAGCAGAGA
GAGACGGTAAGCTGCCCCCGCTCTCTCCT
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