mRNA_L-digitata_M_contig100588.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100588.2.1
Unique NamemRNA_L-digitata_M_contig100588.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100588.2.1 vs. uniprot
Match: A0A7V1BDY6_9RHOB (HNH endonuclease n=2 Tax=root TaxID=1 RepID=A0A7V1BDY6_9RHOB)

HSP 1 Score: 108 bits (270), Expect = 1.500e-27
Identity = 51/81 (62.96%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 MFSSLADTGLSILTLSAQQHNILNALMIDDIVEMMTREEWTCHRCGVHLPQMMEVDHLKGHALSGTSGIMPICQFCHDLKH 243
            MF +L    L+ LTLSAQ HN LNA MID+IV  M   +WTC+ CGV LPQMMEVDHLKGH  S    + PICQFCHD KH
Sbjct:    1 MFLNLFQMHLTTLTLSAQAHNKLNATMIDEIVSAMQAHDWTCNVCGVRLPQMMEVDHLKGHNPSAKDALAPICQFCHDRKH 81
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BLAST of mRNA_L-digitata_M_contig100588.2.1 vs. uniprot
Match: A0A2T6B903_9RHOB (Uncharacterized protein n=1 Tax=Gemmobacter caeni TaxID=589035 RepID=A0A2T6B903_9RHOB)

HSP 1 Score: 87.8 bits (216), Expect = 1.600e-19
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:    1 MFSSLADTGLSILTLSAQQHNILNALMIDDIVEMMTREEWTCHRCGVHLPQMMEVDHLKGHALSGTSGIMPICQFCHDLKHP 246
            MF  +      +L L A+ H ++NA M  +I   +   +WTCH CGV L  +ME+DHLKGH  S  + + PICQFCHDL+HP
Sbjct:    1 MFRDVLTGHPRLLNLGARDHALINATMTAEIATALKSGDWTCHVCGVRLEGLMEIDHLKGHRKSIAAELAPICQFCHDLRHP 82
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BLAST of mRNA_L-digitata_M_contig100588.2.1 vs. uniprot
Match: UPI00048768EB (HNH endonuclease n=1 Tax=Leisingera caerulea TaxID=506591 RepID=UPI00048768EB)

HSP 1 Score: 77.0 bits (188), Expect = 2.520e-15
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:    1 MFSSLADTGLSILTLSAQQHNILNALMIDDIVEMMTREEWTCHRCGVHLPQMMEVDHLKGHALSGTSGIMPICQFCHDLKHP 246
            M S +  + L  + L    H  L      +  E+M R++  CH CGV +P MME+DHLKGH  S  S +  ICQFCH+LKHP
Sbjct:    1 MLSDMLKSSLVTMNLRVVDHAALLVPQAQECGEVMKRDQERCHICGVRVPGMMEIDHLKGHRESPASDMACICQFCHNLKHP 82
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100588.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7V1BDY6_9RHOB1.500e-2762.96HNH endonuclease n=2 Tax=root TaxID=1 RepID=A0A7V1... [more]
A0A2T6B903_9RHOB1.600e-1946.34Uncharacterized protein n=1 Tax=Gemmobacter caeni ... [more]
UPI00048768EB2.520e-1543.90HNH endonuclease n=1 Tax=Leisingera caerulea TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100588contigL-digitata_M_contig100588:694..939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size246
Hectar predicted targeting categoryother localisation
Exons1
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406608.723172-CDS-L-digitata_M_contig100588:693..9391682406608.723172-CDS-L-digitata_M_contig100588:693..939Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100588 694..939 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100588.2.1prot_L-digitata_M_contig100588.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100588 694..939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100588.2.1

>prot_L-digitata_M_contig100588.2.1 ID=prot_L-digitata_M_contig100588.2.1|Name=mRNA_L-digitata_M_contig100588.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=82bp
MFSSLADTGLSILTLSAQQHNILNALMIDDIVEMMTREEWTCHRCGVHLP
QMMEVDHLKGHALSGTSGIMPICQFCHDLKHP
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mRNA from alignment at L-digitata_M_contig100588:694..939+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100588.2.1 ID=mRNA_L-digitata_M_contig100588.2.1|Name=mRNA_L-digitata_M_contig100588.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=246bp|location=Sequence derived from alignment at L-digitata_M_contig100588:694..939+ (Laminaria digitata LdigPH10_18mv male)
ATGTTTTCCAGTCTCGCCGATACAGGCCTGTCAATTCTGACACTTTCTGC
ACAACAGCATAATATTCTCAATGCTTTGATGATTGATGATATTGTCGAGA
TGATGACCAGAGAGGAATGGACATGCCACCGGTGCGGTGTCCATCTTCCA
CAAATGATGGAAGTGGATCATCTCAAGGGGCACGCCCTGTCAGGGACGTC
CGGCATCATGCCGATTTGTCAATTCTGTCATGATCTCAAGCATCCG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100588:694..939+

>mRNA_L-digitata_M_contig100588.2.1 ID=mRNA_L-digitata_M_contig100588.2.1|Name=mRNA_L-digitata_M_contig100588.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=246bp|location=Sequence derived from alignment at L-digitata_M_contig100588:694..939+ (Laminaria digitata LdigPH10_18mv male)
ATGTTTTCCAGTCTCGCCGATACAGGCCTGTCAATTCTGACACTTTCTGC
ACAACAGCATAATATTCTCAATGCTTTGATGATTGATGATATTGTCGAGA
TGATGACCAGAGAGGAATGGACATGCCACCGGTGCGGTGTCCATCTTCCA
CAAATGATGGAAGTGGATCATCTCAAGGGGCACGCCCTGTCAGGGACGTC
CGGCATCATGCCGATTTGTCAATTCTGTCATGATCTCAAGCATCCG
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