mRNA_L-digitata_M_contig100577.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100577.1.1
Unique NamemRNA_L-digitata_M_contig100577.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100577.1.1 vs. uniprot
Match: A0A520NN62_9PROT (DNA gyrase subunit A n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NN62_9PROT)

HSP 1 Score: 540 bits (1391), Expect = 1.050e-183
Identity = 277/313 (88.50%), Postives = 299/313 (95.53%), Query Frame = 1
Query:    1 LPAKFPNILVNGAGGIAVGMATNIPPHNLGEVIDACCAVLDNPDVTIDELMEVIPGPDFPTGGIIIGRQGLTSAFHTGRGAVVMRGRATVEEIRKDREAIIISEIPYQVNKSRMIERIAEMVRDKKIEGISDLRDESDRDGVRVVIEIKRDSLGEVVLNQLYRYSPLQTSFGVNTLALNNGKPELLNLKRILEAFIDFREDVIRRRTEFDLNKARDRAHVLVGLAIAVANIDDVIALIRAAKDPVEAREGLMARDWAASEVESLIELIDDPNHAVVDGRYRLSEAQARAILELRLQRLTGLEQAKIAEELNGL 939
            LPAKFPN+LVNG GGIAVGMATNIPPHNLGEVIDACCA++DN D++I ELMEVIPGPDFPTGGII+GRQG TSAF TGRG+VVMRGR ++EEIRKDREAII+SEIPYQVNK+RMIERIAEMVRDKKIEG+ DLRDESDRDGVRVVIEIKRDSL EVVLNQLYRYSPLQTSFGVNTLALNNGKP+LLNLK+ILEAF+DFRE+VIRRRTE+DL+KARDRAHVLVGLAIAVANID+VIALIRAAKDPVEAR GLMARDWAA EV SLI LIDDPNH VV+GRYRLSEAQARAILELRLQRLTGLEQ KIA+EL+GL
Sbjct:  166 LPAKFPNLLVNGGGGIAVGMATNIPPHNLGEVIDACCALIDNADLSIGELMEVIPGPDFPTGGIIVGRQGSTSAFETGRGSVVMRGRVSIEEIRKDREAIIVSEIPYQVNKARMIERIAEMVRDKKIEGVGDLRDESDRDGVRVVIEIKRDSLAEVVLNQLYRYSPLQTSFGVNTLALNNGKPQLLNLKQILEAFVDFREEVIRRRTEYDLSKARDRAHVLVGLAIAVANIDEVIALIRAAKDPVEARNGLMARDWAAEEVASLIALIDDPNHMVVEGRYRLSEAQARAILELRLQRLTGLEQEKIADELSGL 478          
BLAST of mRNA_L-digitata_M_contig100577.1.1 vs. uniprot
Match: A0A2S6QBW2_9PROT (DNA gyrase subunit A n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6QBW2_9PROT)

HSP 1 Score: 527 bits (1358), Expect = 1.010e-178
Identity = 272/313 (86.90%), Postives = 295/313 (94.25%), Query Frame = 1
Query:    1 LPAKFPNILVNGAGGIAVGMATNIPPHNLGEVIDACCAVLDNPDVTIDELMEVIPGPDFPTGGIIIGRQGLTSAFHTGRGAVVMRGRATVEEIRKDREAIIISEIPYQVNKSRMIERIAEMVRDKKIEGISDLRDESDRDGVRVVIEIKRDSLGEVVLNQLYRYSPLQTSFGVNTLALNNGKPELLNLKRILEAFIDFREDVIRRRTEFDLNKARDRAHVLVGLAIAVANIDDVIALIRAAKDPVEAREGLMARDWAASEVESLIELIDDPNHAVVDGRYRLSEAQARAILELRLQRLTGLEQAKIAEELNGL 939
            LPAKFPN+LVNG GGIAVGMATNIPPHNLGEVIDACCA++DNP++ I ELM+VIPGPDFPTGGII+GRQGLT+AF TGRG+VVMRGR ++EEIRKDREAIIISEIPYQVNKSRMIERIAEMVRDKKIEGI DLRDESDRDGVRVVIEIKRD+L +VVLNQLYRYSPLQTSFGVNTLALN GKPELLNLK+ILEAF+ FRE+VIRRRTEFDL+KARDRAHVLVGLAIAVANID+ IALIR AKDPVEAR  LM RDW A++V SLIELIDDP+H VVDGRYRLSEAQARAILELRLQRLTGLE+ KIAEEL+GL
Sbjct:  166 LPAKFPNLLVNGGGGIAVGMATNIPPHNLGEVIDACCALIDNPNLPIAELMQVIPGPDFPTGGIIVGRQGLTNAFETGRGSVVMRGRVSIEEIRKDREAIIISEIPYQVNKSRMIERIAEMVRDKKIEGIGDLRDESDRDGVRVVIEIKRDALADVVLNQLYRYSPLQTSFGVNTLALNEGKPELLNLKQILEAFVHFREEVIRRRTEFDLSKARDRAHVLVGLAIAVANIDEAIALIRGAKDPVEARTELMNRDWTATDVASLIELIDDPDHVVVDGRYRLSEAQARAILELRLQRLTGLERDKIAEELSGL 478          
BLAST of mRNA_L-digitata_M_contig100577.1.1 vs. uniprot
Match: UPI00115E4B20 (DNA gyrase subunit A n=1 Tax=Telmatospirillum sp. J64-1 TaxID=2502183 RepID=UPI00115E4B20)

HSP 1 Score: 473 bits (1218), Expect = 7.140e-158
Identity = 239/313 (76.36%), Postives = 279/313 (89.14%), Query Frame = 1
Query:    1 LPAKFPNILVNGAGGIAVGMATNIPPHNLGEVIDACCAVLDNPDVTIDELMEVIPGPDFPTGGIIIGRQGLTSAFHTGRGAVVMRGRATVEEIRKDREAIIISEIPYQVNKSRMIERIAEMVRDKKIEGISDLRDESDRDGVRVVIEIKRDSLGEVVLNQLYRYSPLQTSFGVNTLALNNGKPELLNLKRILEAFIDFREDVIRRRTEFDLNKARDRAHVLVGLAIAVANIDDVIALIRAAKDPVEAREGLMARDWAASEVESLIELIDDPNHAVVDGRYRLSEAQARAILELRLQRLTGLEQAKIAEELNGL 939
            LPA+FPN+LVNGAGGIAVGMATNIPPHNLGEVIDACCA +DNP+VT +ELME++P PDFPTGGII+GR G  SA+ TGRG++V+RGR  +EEIRKDREAI+++EIPYQVNK+RMIE+IAE+VRDK+IEGISDLRDESDRDGVRVVIE+KRD+  +VVLNQLYR++PLQTSFGVN LALN GKPE++ L+ I+ AF++FRE+VI RRT F+L KARDRAHVLVGLAIAVAN+D VI LIR A DPV ARE LMARDW AS+VE LI LID+P   VVDG+YRLSEAQARAIL+LRL RLTGLE+ KIAEEL G+
Sbjct:  164 LPARFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACCAYIDNPEVTAEELMELVPAPDFPTGGIIVGRVGARSAYTTGRGSIVIRGRCHIEEIRKDREAIVVTEIPYQVNKARMIEQIAELVRDKRIEGISDLRDESDRDGVRVVIEVKRDAQADVVLNQLYRFTPLQTSFGVNMLALNGGKPEMMALRDIIVAFVNFREEVITRRTIFELEKARDRAHVLVGLAIAVANLDPVIKLIRQAPDPVTAREQLMARDWDASDVEPLIRLIDEPGRGVVDGKYRLSEAQARAILDLRLHRLTGLERGKIAEELTGI 476          
BLAST of mRNA_L-digitata_M_contig100577.1.1 vs. uniprot
Match: A0A2E6GND5_9PROT (DNA gyrase subunit A n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GND5_9PROT)

HSP 1 Score: 469 bits (1208), Expect = 2.910e-156
Identity = 237/313 (75.72%), Postives = 277/313 (88.50%), Query Frame = 1
Query:    1 LPAKFPNILVNGAGGIAVGMATNIPPHNLGEVIDACCAVLDNPDVTIDELMEVIPGPDFPTGGIIIGRQGLTSAFHTGRGAVVMRGRATVEEIRKDREAIIISEIPYQVNKSRMIERIAEMVRDKKIEGISDLRDESDRDGVRVVIEIKRDSLGEVVLNQLYRYSPLQTSFGVNTLALNNGKPELLNLKRILEAFIDFREDVIRRRTEFDLNKARDRAHVLVGLAIAVANIDDVIALIRAAKDPVEAREGLMARDWAASEVESLIELIDDPNHAVVDGRYRLSEAQARAILELRLQRLTGLEQAKIAEELNGL 939
            LPA+FPN+LVNGAGGIAVGMATNIP HNLGEVID CCA+LDNPD++I+EL+E+IPGPDFPTGG+I+GR G+  A+HTGRG+VV+RGR  VEEIRKDREAII++EIPYQVNK+RMIERIAEMVRDK+IEGISD+RDESDRDGVRVVIE+KRD + EVVLNQL+RY+PLQTSFG+N LALN G+P+ + ++ +L AFI FRE+VI RRT ++L KARDRAHVLVGLAIAVANID VI LIR+A DPV AREGLM   W A +V SLIELID+P   VVDG+Y+LSE QARAIL+LRLQRLTGLE+ KIAEEL  L
Sbjct:  163 LPARFPNLLVNGAGGIAVGMATNIPTHNLGEVIDGCCALLDNPDISINELIEIIPGPDFPTGGLIMGRNGINQAYHTGRGSVVIRGRTHVEEIRKDREAIIVTEIPYQVNKARMIERIAEMVRDKRIEGISDIRDESDRDGVRVVIEVKRDHMAEVVLNQLFRYTPLQTSFGINMLALNGGRPQQMTVRDVLVAFIAFREEVITRRTIYELGKARDRAHVLVGLAIAVANIDKVIELIRSAPDPVTAREGLMKDPWPAGDVASLIELIDEPGRGVVDGKYQLSETQARAILDLRLQRLTGLERGKIAEELEEL 475          
BLAST of mRNA_L-digitata_M_contig100577.1.1 vs. uniprot
Match: A0A6N7FCP9_9PROT (DNA gyrase subunit A n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FCP9_9PROT)

HSP 1 Score: 468 bits (1203), Expect = 1.360e-155
Identity = 235/313 (75.08%), Postives = 278/313 (88.82%), Query Frame = 1
Query:    1 LPAKFPNILVNGAGGIAVGMATNIPPHNLGEVIDACCAVLDNPDVTIDELMEVIPGPDFPTGGIIIGRQGLTSAFHTGRGAVVMRGRATVEEIRKDREAIIISEIPYQVNKSRMIERIAEMVRDKKIEGISDLRDESDRDGVRVVIEIKRDSLGEVVLNQLYRYSPLQTSFGVNTLALNNGKPELLNLKRILEAFIDFREDVIRRRTEFDLNKARDRAHVLVGLAIAVANIDDVIALIRAAKDPVEAREGLMARDWAASEVESLIELIDDPNHAVVDGRYRLSEAQARAILELRLQRLTGLEQAKIAEELNGL 939
            LPA+FPN+LVNGAGGIAVGMATNIPPHNLGEVIDACCA+LDNP+++I EL++ +PGPDFPTGGII+GR G+  A+HTGRG+VV+RGR   EE+RKDREAII++E+PYQVNK+RMIERIAEMVR+K+IEGISD+RDESDR+GVRVVIE++RD++ E+VLNQL+RY+PLQTSFGVN LALN G+PE++NL ++L+AFI FRE+VI RRT F+L KARDRAHVL GLAIAVANID VI LIRAAKDPVEAR  LM   W A +V  LI LID+P H VVDG+Y LSE QARAIL+LRLQRLTGLE+ KIAEEL GL
Sbjct:  163 LPARFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACCAMLDNPNISIAELIQHLPGPDFPTGGIILGRTGIHQAYHTGRGSVVIRGRTYFEEVRKDREAIIVTEVPYQVNKARMIERIAEMVREKRIEGISDIRDESDRNGVRVVIELRRDAMAEIVLNQLFRYTPLQTSFGVNMLALNGGRPEMMNLAQVLQAFIAFREEVITRRTIFELGKARDRAHVLAGLAIAVANIDAVIELIRAAKDPVEARTQLMEAAWPAGDVAPLIALIDEPGHRVVDGKYTLSEIQARAILDLRLQRLTGLERGKIAEELEGL 475          
BLAST of mRNA_L-digitata_M_contig100577.1.1 vs. uniprot
Match: UPI0019959352 (DNA topoisomerase (ATP-hydrolyzing) subunit A n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=UPI0019959352)

HSP 1 Score: 455 bits (1170), Expect = 2.740e-155
Identity = 226/310 (72.90%), Postives = 274/310 (88.39%), Query Frame = 1
Query:    1 LPAKFPNILVNGAGGIAVGMATNIPPHNLGEVIDACCAVLDNPDVTIDELMEVIPGPDFPTGGIIIGRQGLTSAFHTGRGAVVMRGRATVEEIRKDREAIIISEIPYQVNKSRMIERIAEMVRDKKIEGISDLRDESDRDGVRVVIEIKRDSLGEVVLNQLYRYSPLQTSFGVNTLALNNGKPELLNLKRILEAFIDFREDVIRRRTEFDLNKARDRAHVLVGLAIAVANIDDVIALIRAAKDPVEAREGLMARDWAASEVESLIELIDDPNHAVVDGRYRLSEAQARAILELRLQRLTGLEQAKIAEEL 930
            LPA+FPN+LVNGAGGIAVGMATNIPPHNLGEVIDACCA +++P++T +++ME++PGPDFPTGG I+GR G+ +A  TGRG+++MRGR  VEEIRKDREAII++E+PYQVNK+RMIE+IAE+VRDKKIEGISDLRDESDRDGVRVVIEIKRD++ +VVL QLY+++PLQTSFGVN+LALN GKPE++ L+ I+ AFI FRE+VI RRT F+L KARDRAHVLVGL+IAVANID++IA+IRAA DP  ARE LMARDW A +VE LI LID+P   +VDG Y LSE QA+AIL+LRL RLTGLE+ KI +EL
Sbjct:  163 LPARFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACCAYIEDPEITPEQIMEIVPGPDFPTGGTILGRAGIRAAHLTGRGSIIMRGRCHVEEIRKDREAIIVTEVPYQVNKARMIEQIAELVRDKKIEGISDLRDESDRDGVRVVIEIKRDAIADVVLAQLYKFTPLQTSFGVNSLALNGGKPEMMTLREIIVAFIAFREEVITRRTIFELGKARDRAHVLVGLSIAVANIDEMIAMIRAAPDPATAREQLMARDWPAMDVEPLIRLIDEPGRGIVDGNYMLSEVQAKAILDLRLHRLTGLERDKIGDEL 472          
BLAST of mRNA_L-digitata_M_contig100577.1.1 vs. uniprot
Match: A0A5C7NFE3_9PROT (DNA gyrase subunit A n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NFE3_9PROT)

HSP 1 Score: 464 bits (1195), Expect = 2.990e-154
Identity = 236/314 (75.16%), Postives = 277/314 (88.22%), Query Frame = 1
Query:    1 LPAKFPNILVNGAGGIAVGMATNIPPHNLGEVIDACCAVLDNPDVTIDELMEVIPGPDFPTGGIIIGRQGLTSAFHTGRGAVVMRGRATVEEIRKDREAIIISEIPYQVNKSRMIERIAEMVRDKKIEGISDLRDESDRDGVRVVIEIKRDSLGEVVLNQLYRYSPLQTSFGVNTLALNNGKPELLNLKRILEAFIDFREDVIRRRTEFDLNKARDRAHVLVGLAIAVANIDDVIALIRAAKDPVEAREGLMARDWAASEVESLIELIDDPNHAVVD-GRYRLSEAQARAILELRLQRLTGLEQAKIAEELNGL 939
            LPA+FPN+LVNGAGGIAVGMATNIP HNL EVIDACCA +DNP +TID++M+ +PGPDFPTGG+I+GR G+  AFHTGRG+VVMRGR  VEEIRKDR+AIII+EIPYQVNK+RMIER+AE+VR+K IEGI+DLRDESDRDGVRVV+E+KRD++ EVVLNQL+R++PLQTSFGVN LALN G+P+L+NLK I+ AFI FRE+VI RRT F+LN+ R+RAHVLVGLAIAVANID++IALIR A DPV ARE LMARDW A +V  LI LIDDP H + + G YRLSEAQARAILELRLQRLTGLE+ KIA+EL  L
Sbjct:  163 LPARFPNLLVNGAGGIAVGMATNIPTHNLSEVIDACCAYIDNPGITIDQIMQHVPGPDFPTGGLILGRNGIREAFHTGRGSVVMRGRTHVEEIRKDRDAIIITEIPYQVNKARMIERMAEVVREKLIEGIADLRDESDRDGVRVVVELKRDAMAEVVLNQLFRFTPLQTSFGVNMLALNGGRPQLMNLKEIIAAFIHFREEVITRRTVFELNQTRERAHVLVGLAIAVANIDEIIALIRRAPDPVVAREQLMARDWPAEDVAPLIRLIDDPTHTISENGTYRLSEAQARAILELRLQRLTGLERDKIADELKEL 476          
BLAST of mRNA_L-digitata_M_contig100577.1.1 vs. uniprot
Match: A0A2E5V7A5_9PROT (DNA gyrase subunit A n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5V7A5_9PROT)

HSP 1 Score: 462 bits (1189), Expect = 8.590e-154
Identity = 232/313 (74.12%), Postives = 274/313 (87.54%), Query Frame = 1
Query:    1 LPAKFPNILVNGAGGIAVGMATNIPPHNLGEVIDACCAVLDNPDVTIDELMEVIPGPDFPTGGIIIGRQGLTSAFHTGRGAVVMRGRATVEEIRKDREAIIISEIPYQVNKSRMIERIAEMVRDKKIEGISDLRDESDRDGVRVVIEIKRDSLGEVVLNQLYRYSPLQTSFGVNTLALNNGKPELLNLKRILEAFIDFREDVIRRRTEFDLNKARDRAHVLVGLAIAVANIDDVIALIRAAKDPVEAREGLMARDWAASEVESLIELIDDPNHAVVDGRYRLSEAQARAILELRLQRLTGLEQAKIAEELNGL 939
            LPAK+PN+LVNGAGGIAVGMATNIP HNLGEVID CCA+LDNP++TI EL+++IPGPDFPTGG+I+GR G+  A++TGRG+VV+RGR  +EE+RKDREAII++E+PYQ+NK+RMIERIAEMVRDK+IEGISD+RDESDRDGVRVVIEIKRD + EVVLNQL++Y+PLQTSFGVN LALN G+PEL+ ++ +L AFI FRE+VI RRT ++L KARDRAHVLVGLAIAVANID +I LIR A DPV AREGLM   W A EV SLIELID+P   VV+G Y+LSE QARAIL+LRLQRLTGLE+ KIA EL  L
Sbjct:  163 LPAKYPNLLVNGAGGIAVGMATNIPTHNLGEVIDGCCALLDNPNLTIGELLQIIPGPDFPTGGLIMGRXGINQAYNTGRGSVVIRGRTHIEEVRKDREAIIVTEVPYQINKARMIERIAEMVRDKRIEGISDIRDESDRDGVRVVIEIKRDHMSEVVLNQLFKYTPLQTSFGVNLLALNGGRPELMTVRDVLSAFISFREEVITRRTVYELGKARDRAHVLVGLAIAVANIDKIIELIRGAPDPVTAREGLMKNTWPAGEVVSLIELIDEPGRGVVEGSYQLSEVQARAILDLRLQRLTGLERDKIAGELEDL 475          
BLAST of mRNA_L-digitata_M_contig100577.1.1 vs. uniprot
Match: A0A2E3K5V3_9PROT (DNA gyrase subunit A n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E3K5V3_9PROT)

HSP 1 Score: 461 bits (1185), Expect = 3.500e-153
Identity = 228/313 (72.84%), Postives = 275/313 (87.86%), Query Frame = 1
Query:    1 LPAKFPNILVNGAGGIAVGMATNIPPHNLGEVIDACCAVLDNPDVTIDELMEVIPGPDFPTGGIIIGRQGLTSAFHTGRGAVVMRGRATVEEIRKDREAIIISEIPYQVNKSRMIERIAEMVRDKKIEGISDLRDESDRDGVRVVIEIKRDSLGEVVLNQLYRYSPLQTSFGVNTLALNNGKPELLNLKRILEAFIDFREDVIRRRTEFDLNKARDRAHVLVGLAIAVANIDDVIALIRAAKDPVEAREGLMARDWAASEVESLIELIDDPNHAVVDGRYRLSEAQARAILELRLQRLTGLEQAKIAEELNGL 939
            LPA+FPN+LVNGAGGIAVGMATNIP HNL EV+DA CA+LDNPD+++DEL+  +PGPDFPTGG+I+G+ G+  A+HTGRG+V+MRGR  +EEIRKDREAI+++EIPYQVNK+RMIERIAE+VR+K+IEGISD+RDESDRDGVRVV+E+KRDS  ++VLNQLYRYSPLQTSFG+N LALN G+PELLNLK +L+AFI FRE+VI RRT F+L KARDRAHVL GLA AV NI++VI LIR A DPV+AR+ LM   W A+EV SLI LIDDPNH V+DG+Y LSEAQARAILELRLQRLT LE+ K++ +L+ L
Sbjct:  143 LPARFPNLLVNGAGGIAVGMATNIPTHNLDEVVDATCALLDNPDISVDELITFLPGPDFPTGGLIMGKSGIIQAYHTGRGSVIMRGRTHIEEIRKDREAIVVTEIPYQVNKARMIERIAELVREKRIEGISDIRDESDRDGVRVVVEVKRDSQADIVLNQLYRYSPLQTSFGINMLALNAGRPELLNLKNVLQAFIKFREEVITRRTIFELRKARDRAHVLAGLATAVVNIENVIQLIRNAPDPVKARKSLMEISWPANEVASLISLIDDPNHEVIDGKYTLSEAQARAILELRLQRLTSLEREKVSSDLSFL 455          
BLAST of mRNA_L-digitata_M_contig100577.1.1 vs. uniprot
Match: UPI0019C8BCB6 (DNA gyrase subunit A n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=UPI0019C8BCB6)

HSP 1 Score: 459 bits (1181), Expect = 9.120e-153
Identity = 227/310 (73.23%), Postives = 276/310 (89.03%), Query Frame = 1
Query:    1 LPAKFPNILVNGAGGIAVGMATNIPPHNLGEVIDACCAVLDNPDVTIDELMEVIPGPDFPTGGIIIGRQGLTSAFHTGRGAVVMRGRATVEEIRKDREAIIISEIPYQVNKSRMIERIAEMVRDKKIEGISDLRDESDRDGVRVVIEIKRDSLGEVVLNQLYRYSPLQTSFGVNTLALNNGKPELLNLKRILEAFIDFREDVIRRRTEFDLNKARDRAHVLVGLAIAVANIDDVIALIRAAKDPVEAREGLMARDWAASEVESLIELIDDPNHAVVDGRYRLSEAQARAILELRLQRLTGLEQAKIAEEL 930
            LPA+FPN+LVNGAGGIAVGMATNIPPHNLGEVIDACCA +D+P++T +++ME++PGPDFPTGG I+GR G+ +A+ TGRG+++MRGR  VEEIRKDREAII++E+PYQVNK+RMIE+IAE+VRDKKIEGISDLRDESDRDGVRVVIEIKRD++ +VVL QLY+++PLQTSFGVN+LALN GKPE++ L+ I+ AFI FRE+VI RRT ++L KARDRAHVLVGL+IAVANID++IA+IRAA DP  ARE LMARDW A EVE LI LID+P   +VDG+Y LSE QA+AIL+LRL RLTGLE+ KI +EL
Sbjct:  163 LPARFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACCAYIDDPEITPEQMMEIVPGPDFPTGGTILGRAGIRAAYMTGRGSIIMRGRCHVEEIRKDREAIIVTEVPYQVNKARMIEQIAELVRDKKIEGISDLRDESDRDGVRVVIEIKRDAIADVVLAQLYKFTPLQTSFGVNSLALNGGKPEMMTLREIIVAFIAFREEVITRRTIYELGKARDRAHVLVGLSIAVANIDEMIAMIRAAPDPATAREQLMARDWPAMEVEPLIRLIDEPGRGIVDGKYMLSEVQAKAILDLRLHRLTGLERDKIGDEL 472          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100577.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A520NN62_9PROT1.050e-18388.50DNA gyrase subunit A n=2 Tax=Rhodospirillaceae bac... [more]
A0A2S6QBW2_9PROT1.010e-17886.90DNA gyrase subunit A n=1 Tax=Alphaproteobacteria b... [more]
UPI00115E4B207.140e-15876.36DNA gyrase subunit A n=1 Tax=Telmatospirillum sp. ... [more]
A0A2E6GND5_9PROT2.910e-15675.72DNA gyrase subunit A n=1 Tax=Rhodospirillaceae bac... [more]
A0A6N7FCP9_9PROT1.360e-15575.08DNA gyrase subunit A n=1 Tax=Alphaproteobacteria b... [more]
UPI00199593522.740e-15572.90DNA topoisomerase (ATP-hydrolyzing) subunit A n=1 ... [more]
A0A5C7NFE3_9PROT2.990e-15475.16DNA gyrase subunit A n=1 Tax=Rhodospirillaceae bac... [more]
A0A2E5V7A5_9PROT8.590e-15474.12DNA gyrase subunit A n=2 Tax=Rhodospirillaceae bac... [more]
A0A2E3K5V3_9PROT3.500e-15372.84DNA gyrase subunit A n=1 Tax=Rhodospirillaceae bac... [more]
UPI0019C8BCB69.120e-15373.23DNA gyrase subunit A n=1 Tax=Rhodospirillaceae bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100577contigL-digitata_M_contig100577:1..939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1430440.MGMSRv2_1002
Preferred namegyrA
PFAMsDNA_gyraseA_C,DNA_topoisoIV
Model size939
Max annot lvl204441|Rhodospirillales
KEGG koko:K02469
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.1e-150
EggNOG OGsCOG0188@1|root,COG0188@2|Bacteria,1MUGG@1224|Proteobacteria,2TSPQ@28211|Alphaproteobacteria,2JPVX@204441|Rhodospirillales
EC5.99.1.3
DescriptionA type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
Cds size939
COG categoryL
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406608.5531952-CDS-L-digitata_M_contig100577:0..9391682406608.5531952-CDS-L-digitata_M_contig100577:0..939Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100577 1..939 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100577.1.1prot_L-digitata_M_contig100577.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100577 1..939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100577.1.1

>prot_L-digitata_M_contig100577.1.1 ID=prot_L-digitata_M_contig100577.1.1|Name=mRNA_L-digitata_M_contig100577.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=313bp
LPAKFPNILVNGAGGIAVGMATNIPPHNLGEVIDACCAVLDNPDVTIDEL
MEVIPGPDFPTGGIIIGRQGLTSAFHTGRGAVVMRGRATVEEIRKDREAI
IISEIPYQVNKSRMIERIAEMVRDKKIEGISDLRDESDRDGVRVVIEIKR
DSLGEVVLNQLYRYSPLQTSFGVNTLALNNGKPELLNLKRILEAFIDFRE
DVIRRRTEFDLNKARDRAHVLVGLAIAVANIDDVIALIRAAKDPVEAREG
LMARDWAASEVESLIELIDDPNHAVVDGRYRLSEAQARAILELRLQRLTG
LEQAKIAEELNGL
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mRNA from alignment at L-digitata_M_contig100577:1..939+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100577.1.1 ID=mRNA_L-digitata_M_contig100577.1.1|Name=mRNA_L-digitata_M_contig100577.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=939bp|location=Sequence derived from alignment at L-digitata_M_contig100577:1..939+ (Laminaria digitata LdigPH10_18mv male)
CTGCCGGCGAAGTTTCCGAATATTCTCGTCAATGGCGCCGGCGGTATCGC CGTTGGTATGGCGACCAATATTCCGCCGCATAATCTGGGCGAGGTCATCG ATGCCTGCTGCGCGGTGCTCGATAATCCGGATGTGACGATCGATGAGCTG ATGGAGGTTATCCCGGGCCCGGATTTCCCGACAGGCGGGATTATCATCGG CCGCCAGGGCCTGACATCGGCTTTCCACACGGGGCGGGGGGCTGTGGTCA TGCGCGGCCGTGCGACGGTTGAGGAAATCCGCAAGGATCGCGAAGCGATC ATCATCTCGGAAATCCCTTATCAGGTGAATAAATCCCGGATGATCGAACG CATCGCCGAGATGGTGCGCGATAAGAAGATCGAAGGAATCTCCGATCTGC GCGACGAATCCGACCGGGATGGCGTGCGTGTGGTCATCGAGATCAAACGG GATTCGCTGGGCGAGGTGGTGCTCAATCAGCTCTACCGCTATTCGCCATT GCAGACGAGCTTCGGCGTCAACACGCTCGCCCTGAATAACGGCAAGCCTG AACTGCTGAACCTGAAGCGTATCCTCGAAGCGTTTATCGATTTTCGCGAA GACGTCATTCGCCGGCGGACAGAATTCGATCTCAACAAGGCGCGGGATCG CGCGCACGTGTTGGTCGGCCTTGCCATCGCCGTTGCCAATATCGACGATG TGATCGCGCTGATCCGCGCCGCGAAGGACCCGGTAGAAGCCCGTGAAGGC CTGATGGCGCGGGACTGGGCGGCATCGGAAGTGGAATCGCTGATCGAGCT TATCGACGATCCGAACCATGCCGTGGTCGACGGCCGGTACCGTCTGTCGG AAGCGCAGGCCCGCGCGATCCTCGAACTGCGGCTCCAGCGCCTGACAGGG CTGGAACAGGCCAAAATCGCTGAGGAACTGAACGGCCTT
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Coding sequence (CDS) from alignment at L-digitata_M_contig100577:1..939+

>mRNA_L-digitata_M_contig100577.1.1 ID=mRNA_L-digitata_M_contig100577.1.1|Name=mRNA_L-digitata_M_contig100577.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=939bp|location=Sequence derived from alignment at L-digitata_M_contig100577:1..939+ (Laminaria digitata LdigPH10_18mv male)
CTGCCGGCGAAGTTTCCGAATATTCTCGTCAATGGCGCCGGCGGTATCGC
CGTTGGTATGGCGACCAATATTCCGCCGCATAATCTGGGCGAGGTCATCG
ATGCCTGCTGCGCGGTGCTCGATAATCCGGATGTGACGATCGATGAGCTG
ATGGAGGTTATCCCGGGCCCGGATTTCCCGACAGGCGGGATTATCATCGG
CCGCCAGGGCCTGACATCGGCTTTCCACACGGGGCGGGGGGCTGTGGTCA
TGCGCGGCCGTGCGACGGTTGAGGAAATCCGCAAGGATCGCGAAGCGATC
ATCATCTCGGAAATCCCTTATCAGGTGAATAAATCCCGGATGATCGAACG
CATCGCCGAGATGGTGCGCGATAAGAAGATCGAAGGAATCTCCGATCTGC
GCGACGAATCCGACCGGGATGGCGTGCGTGTGGTCATCGAGATCAAACGG
GATTCGCTGGGCGAGGTGGTGCTCAATCAGCTCTACCGCTATTCGCCATT
GCAGACGAGCTTCGGCGTCAACACGCTCGCCCTGAATAACGGCAAGCCTG
AACTGCTGAACCTGAAGCGTATCCTCGAAGCGTTTATCGATTTTCGCGAA
GACGTCATTCGCCGGCGGACAGAATTCGATCTCAACAAGGCGCGGGATCG
CGCGCACGTGTTGGTCGGCCTTGCCATCGCCGTTGCCAATATCGACGATG
TGATCGCGCTGATCCGCGCCGCGAAGGACCCGGTAGAAGCCCGTGAAGGC
CTGATGGCGCGGGACTGGGCGGCATCGGAAGTGGAATCGCTGATCGAGCT
TATCGACGATCCGAACCATGCCGTGGTCGACGGCCGGTACCGTCTGTCGG
AAGCGCAGGCCCGCGCGATCCTCGAACTGCGGCTCCAGCGCCTGACAGGG
CTGGAACAGGCCAAAATCGCTGAGGAACTGAACGGCCTT
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