mRNA_L-digitata_M_contig100569.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100569.2.1
Unique NamemRNA_L-digitata_M_contig100569.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100569.2.1 vs. uniprot
Match: A0A2D7FJF4_9PROT (dTTP/UTP pyrophosphatase n=2 Tax=Bacteria TaxID=2 RepID=A0A2D7FJF4_9PROT)

HSP 1 Score: 256 bits (655), Expect = 9.210e-85
Identity = 134/167 (80.24%), Postives = 145/167 (86.83%), Query Frame = 1
Query:    1 MVRNTGPHRLVLASASPRRVELLAQVGIVPDRIAPADIDETPQRREEPGPLAKRLALGKAEAVAAANDDAWVLAADTVVGLGRRILGKPENAAEARRFLSMLSGRRHRVYGGVTVISPTGRASRKLVATTVSFKRLETAEIDIYLESGEWEGKAGGYAIQGHAGGFV 501
            MVR  GP  LVLASASPRR++LL QVGIVP+ I PA IDETPQR EEPG LAKRLALGKAEAV A  DDAWVLAADTVVGLGRRILGKPENA EA +FLSMLSGRRHRVYGGVTVISPTG+ SRKLV T+VSFKRLET EI  Y+++GEW+GKAGGYAIQG AG F+
Sbjct:    1 MVRTAGPRGLVLASASPRRLDLLGQVGIVPNIIVPAGIDETPQRFEEPGLLAKRLALGKAEAVKATQDDAWVLAADTVVGLGRRILGKPENADEAHKFLSMLSGRRHRVYGGVTVISPTGKISRKLVVTSVSFKRLETIEIKSYIDTGEWDGKAGGYAIQGAAGAFI 167          
BLAST of mRNA_L-digitata_M_contig100569.2.1 vs. uniprot
Match: A0A3D2BUS0_9PROT (dTTP/UTP pyrophosphatase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BUS0_9PROT)

HSP 1 Score: 241 bits (616), Expect = 6.270e-79
Identity = 121/167 (72.46%), Postives = 141/167 (84.43%), Query Frame = 1
Query:    1 MVRNTGPHRLVLASASPRRVELLAQVGIVPDRIAPADIDETPQRREEPGPLAKRLALGKAEAVAAANDDAWVLAADTVVGLGRRILGKPENAAEARRFLSMLSGRRHRVYGGVTVISPTGRASRKLVATTVSFKRLETAEIDIYLESGEWEGKAGGYAIQGHAGGFV 501
            MVR +GP RLVLASASPRR +LLAQ+G+VPD + PADIDETP R E+PGPLAKRL+  K EAVAAAN DAWVL+ADTVVGLGRRILGKP +  EARRFL +LSG+RH+V+GG+TV++P      KLV T+V+FKRLETAE+D YL  GEW+GKAGGYAIQG AGGFV
Sbjct:    1 MVRKSGPQRLVLASASPRRRDLLAQIGLVPDEVLPADIDETPLRNEQPGPLAKRLSREKGEAVAAANTDAWVLSADTVVGLGRRILGKPGDETEARRFLKLLSGQRHKVFGGITVVAPDADPVTKLVTTSVTFKRLETAEVDRYLAGGEWQGKAGGYAIQGRAGGFV 167          
BLAST of mRNA_L-digitata_M_contig100569.2.1 vs. uniprot
Match: A0A2S6Q520_9PROT (dTTP/UTP pyrophosphatase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q520_9PROT)

HSP 1 Score: 224 bits (571), Expect = 4.110e-72
Identity = 114/167 (68.26%), Postives = 133/167 (79.64%), Query Frame = 1
Query:    1 MVRNTGPHRLVLASASPRRVELLAQVGIVPDRIAPADIDETPQRREEPGPLAKRLALGKAEAVAAANDDAWVLAADTVVGLGRRILGKPENAAEARRFLSMLSGRRHRVYGGVTVISPTGRASRKLVATTVSFKRLETAEIDIYLESGEWEGKAGGYAIQGHAGGFV 501
            MVRN GPHRLVLASASPRR ELL Q+GIVP+ I PADIDE P   E+PGPLA+RL+L K + VAA   D WVL+ADT+V +GRRILGKPEN ++AR FL +LSGRRH+VYGG+TVI+P      ++V TTV+ KRLE  EID YLE+GEW GKAGGYAIQG AG FV
Sbjct:    1 MVRNPGPHRLVLASASPRRKELLGQIGIVPEAIVPADIDEMPNPGEKPGPLARRLSLEKGKTVAAEVSDTWVLSADTIVAVGRRILGKPENESQARTFLHLLSGRRHKVYGGITVIAPEKPPITRMVTTTVTLKRLEDREIDRYLETGEWRGKAGGYAIQGAAGAFV 167          
BLAST of mRNA_L-digitata_M_contig100569.2.1 vs. uniprot
Match: A0A2D8PPC6_9PROT (dTTP/UTP pyrophosphatase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PPC6_9PROT)

HSP 1 Score: 221 bits (563), Expect = 8.510e-71
Identity = 111/167 (66.47%), Postives = 132/167 (79.04%), Query Frame = 1
Query:    1 MVRNTGPHRLVLASASPRRVELLAQVGIVPDRIAPADIDETPQRREEPGPLAKRLALGKAEAVAAANDDAWVLAADTVVGLGRRILGKPENAAEARRFLSMLSGRRHRVYGGVTVISPTGRASRKLVATTVSFKRLETAEIDIYLESGEWEGKAGGYAIQGHAGGFV 501
            MVR TGP RLVLASASPRR+ LLA+VG+ PD + PA+IDETPQR E+PGPLAKRL+  K + +A     AW+L+ADTVVG+GRRIL KP +  E R FLS+LSGRRHRVYGGVT+ISP G+   +L  T+V+FKRLE  EID Y+ SGEW+GKAGGYAIQG A  FV
Sbjct:    1 MVRTTGPQRLVLASASPRRLNLLARVGLTPDEVLPAEIDETPQRGEKPGPLAKRLSCAKGKTIAEQVHQAWILSADTVVGVGRRILEKPADDGEVRCFLSLLSGRRHRVYGGVTLISPAGKTVTRLTTTSVTFKRLEKDEIDAYIASGEWQGKAGGYAIQGRAAAFV 167          
BLAST of mRNA_L-digitata_M_contig100569.2.1 vs. uniprot
Match: A0A848W3K2_9PROT (dTTP/UTP pyrophosphatase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W3K2_9PROT)

HSP 1 Score: 207 bits (526), Expect = 2.200e-65
Identity = 105/158 (66.46%), Postives = 127/158 (80.38%), Query Frame = 1
Query:   28 LVLASASPRRVELLAQVGIVPDRIAPADIDETPQRREEPGPLAKRLALGKAEAVAAANDDAWVLAADTVVGLGRRILGKPENAAEARRFLSMLSGRRHRVYGGVTVISPTGRASRKLVATTVSFKRLETAEIDIYLESGEWEGKAGGYAIQGHAGGFV 501
            ++LASASPRR+ELLAQVGI PD+I PADIDE+  + EEPGPLA+RLA  KA +VAA + DA+VL ADTVVG+GRRI+GKP +  EARRFL +LSGRRHRVYGG+  I+P G  +++L+ T V FKRL   EID YL +GEW+GKAGGY IQGHA  FV
Sbjct:    1 MILASASPRRLELLAQVGITPDQIDPADIDESAAKDEEPGPLARRLAEAKAASVAARHGDAFVLGADTVVGVGRRIIGKPADVDEARRFLKLLSGRRHRVYGGICAIAPDGGKAQRLINTMVRFKRLTDGEIDTYLATGEWDGKAGGYGIQGHAAAFV 158          
BLAST of mRNA_L-digitata_M_contig100569.2.1 vs. uniprot
Match: A0A1M6KHU6_9PROT (Nucleoside triphosphate pyrophosphatase n=2 Tax=Roseomonas TaxID=125216 RepID=A0A1M6KHU6_9PROT)

HSP 1 Score: 197 bits (502), Expect = 1.730e-61
Identity = 107/158 (67.72%), Postives = 127/158 (80.38%), Query Frame = 1
Query:   28 LVLASASPRRVELLAQVGIVPDRIAPADIDETPQRREEPGPLAKRLALGKAEAVAAANDDAWVLAADTVVGLGRRILGKPENAAEARRFLSMLSGRRHRVYGGVTVISPTGRASRKLVATTVSFKRLETAEIDIYLESGEWEGKAGGYAIQGHAGGFV 501
            LVLASASPRR++LLA++GIVPDR+ PAD+DETP++ E P  LA RLA  KA+AVAA + +A VLAADTVVGLGRRILGKPE+AAEARRFL  LSGRRHRV  GV +ISP G    +LV TT++F+RL  A++D Y+ SGEWEGKAGGYAI   A  FV
Sbjct:   19 LVLASASPRRLDLLARLGIVPDRVDPADVDETPRKAELPRQLAARLAKAKAQAVAARSPEALVLAADTVVGLGRRILGKPEDAAEARRFLEFLSGRRHRVTTGVALISPDGTLRTRLVETTLAFQRLTDAQMDDYVASGEWEGKAGGYAIHQRAEVFV 176          
BLAST of mRNA_L-digitata_M_contig100569.2.1 vs. uniprot
Match: A0A6A7KQI8_9PROT (dTTP/UTP pyrophosphatase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6A7KQI8_9PROT)

HSP 1 Score: 197 bits (501), Expect = 2.030e-61
Identity = 107/159 (67.30%), Postives = 121/159 (76.10%), Query Frame = 1
Query:   25 RLVLASASPRRVELLAQVGIVPDRIAPADIDETPQRREEPGPLAKRLALGKAEAVAAANDDAWVLAADTVVGLGRRILGKPENAAEARRFLSMLSGRRHRVYGGVTVISPTGRASRKLVATTVSFKRLETAEIDIYLESGEWEGKAGGYAIQGHAGGFV 501
            +L+LASASPRR++LLAQ+GIVPD +APA +DETP  RE PGP A RLA  KA+A AA +  A VL ADTVV  GRRIL K E AAEARR L  LSGR HRVYGGV ++ P G   R+LV T V FKRLE AEI+ YL SGEW+GKAGGYAIQG A GFV
Sbjct:   14 KLILASASPRRLDLLAQIGIVPDAVAPAGLDETPLPRELPGPHAARLAHAKAQAAAARHPGACVLGADTVVACGRRILPKAEEAAEARRCLLRLSGRAHRVYGGVCIVGPEGAVRRRLVQTVVRFKRLEEAEIERYLASGEWQGKAGGYAIQGLAAGFV 172          
BLAST of mRNA_L-digitata_M_contig100569.2.1 vs. uniprot
Match: A0A501PFZ5_9PROT (dTTP/UTP pyrophosphatase n=1 Tax=Emcibacter nanhaiensis TaxID=1505037 RepID=A0A501PFZ5_9PROT)

HSP 1 Score: 193 bits (491), Expect = 6.690e-60
Identity = 101/158 (63.92%), Postives = 125/158 (79.11%), Query Frame = 1
Query:   28 LVLASASPRRVELLAQVGIVPDRIAPADIDETPQRREEPGPLAKRLALGKAEAVAAANDDAWVLAADTVVGLGRRILGKPENAAEARRFLSMLSGRRHRVYGGVTVISPTGRASRKLVATTVSFKRLETAEIDIYLESGEWEGKAGGYAIQGHAGGFV 501
            L+LASASPRR ELLAQ+G+VPD I PA+IDETP R E P  LA+RLA+ KA+AV     DA++LA+DTVV LG+RILGKP++  EARRFL+MLSGRRHRVY G+ +I+P G+   ++V T VSFKRL   +ID Y+ SGEW+GKAG YAIQG AG +V
Sbjct:   11 LILASASPRRRELLAQIGLVPDDICPAEIDETPLRDETPRQLAERLAVEKAKAVVEQKPDAFILASDTVVALGQRILGKPDSEQEARRFLTMLSGRRHRVYTGLCLITPDGKTHSRVVMTQVSFKRLTEQDIDTYIASGEWDGKAGAYAIQGLAGRYV 168          
BLAST of mRNA_L-digitata_M_contig100569.2.1 vs. uniprot
Match: A0A2G2R2R0_9PROT (dTTP/UTP pyrophosphatase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2G2R2R0_9PROT)

HSP 1 Score: 192 bits (487), Expect = 1.910e-59
Identity = 99/157 (63.06%), Postives = 126/157 (80.25%), Query Frame = 1
Query:   31 VLASASPRRVELLAQVGIVPDRIAPADIDETPQRREEPGPLAKRLALGKAEAVAAANDDAWVLAADTVVGLGRRILGKPENAAEARRFLSMLSGRRHRVYGGVTVISPTGRASRKLVATTVSFKRLETAEIDIYLESGEWEGKAGGYAIQGHAGGFV 501
            VLASASPRRV+LLAQ+G+ PD+I PADIDETP + E P  LA+RLAL KA+ V   + ++ VLAADTVV +GRR+LGKP++ A+A+R L+MLSGRRH+V GG+ V++P  +   K + T V+FKRL+TAEID YL+SGEW+GKAG YAIQG AG FV
Sbjct:    6 VLASASPRRVDLLAQIGVTPDQIIPADIDETPLKDESPLQLARRLALLKAQEVFKDHPNSCVLAADTVVCVGRRVLGKPQDEADAKRMLNMLSGRRHKVIGGLCVLAPDAKQVLKTITTAVTFKRLDTAEIDAYLKSGEWQGKAGAYAIQGRAGAFV 162          
BLAST of mRNA_L-digitata_M_contig100569.2.1 vs. uniprot
Match: A0A2G4YMC2_9PROT (dTTP/UTP pyrophosphatase n=1 Tax=Paremcibacter congregatus TaxID=2043170 RepID=A0A2G4YMC2_9PROT)

HSP 1 Score: 192 bits (487), Expect = 2.460e-59
Identity = 97/158 (61.39%), Postives = 122/158 (77.22%), Query Frame = 1
Query:   28 LVLASASPRRVELLAQVGIVPDRIAPADIDETPQRREEPGPLAKRLALGKAEAVAAANDDAWVLAADTVVGLGRRILGKPENAAEARRFLSMLSGRRHRVYGGVTVISPTGRASRKLVATTVSFKRLETAEIDIYLESGEWEGKAGGYAIQGHAGGFV 501
            L+L SASPRR ELLAQ+G+ PD I PADIDETPQ+ E P  LA+RLA+ KA A+  A+ D ++LAADTVV LG RILGK EN AEAR++L++LSGRRH+VY GV++I+PTG    ++VAT+V FKRL   ++  YL   EW+GKAG YAIQGHA  F+
Sbjct:   11 LILGSASPRRRELLAQIGLAPDDIVPADIDETPQKSESPRKLAERLAVEKAAALKTAHSDCYILAADTVVALGNRILGKAENTAEARKYLTLLSGRRHKVYSGVSLITPTGTQVSRVVATSVLFKRLSDTDLAAYLSHDEWQGKAGAYAIQGHAARFI 168          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100569.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FJF4_9PROT9.210e-8580.24dTTP/UTP pyrophosphatase n=2 Tax=Bacteria TaxID=2 ... [more]
A0A3D2BUS0_9PROT6.270e-7972.46dTTP/UTP pyrophosphatase n=2 Tax=Rhodospirillaceae... [more]
A0A2S6Q520_9PROT4.110e-7268.26dTTP/UTP pyrophosphatase n=1 Tax=Alphaproteobacter... [more]
A0A2D8PPC6_9PROT8.510e-7166.47dTTP/UTP pyrophosphatase n=1 Tax=Rhodospirillaceae... [more]
A0A848W3K2_9PROT2.200e-6566.46dTTP/UTP pyrophosphatase n=1 Tax=Alphaproteobacter... [more]
A0A1M6KHU6_9PROT1.730e-6167.72Nucleoside triphosphate pyrophosphatase n=2 Tax=Ro... [more]
A0A6A7KQI8_9PROT2.030e-6167.30dTTP/UTP pyrophosphatase n=1 Tax=Alphaproteobacter... [more]
A0A501PFZ5_9PROT6.690e-6063.92dTTP/UTP pyrophosphatase n=1 Tax=Emcibacter nanhai... [more]
A0A2G2R2R0_9PROT1.910e-5963.06dTTP/UTP pyrophosphatase n=2 Tax=Rhodospirillaceae... [more]
A0A2G4YMC2_9PROT2.460e-5961.39dTTP/UTP pyrophosphatase n=1 Tax=Paremcibacter con... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100569contigL-digitata_M_contig100569:439..939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1123060.JONP01000016_gene5460
Preferred namemaf
PFAMsMaf
Model size501
Max annot lvl204441|Rhodospirillales
KEGG koko:K06287
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.86e-60
EggNOG OGsCOG0424@1|root,COG0424@2|Bacteria,1RH6H@1224|Proteobacteria,2TSS5@28211|Alphaproteobacteria,2JRPN@204441|Rhodospirillales
DescriptionMaf-like protein
Cds size501
COG categoryD
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406608.4364045-CDS-L-digitata_M_contig100569:438..9391682406608.4364045-CDS-L-digitata_M_contig100569:438..939Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100569 439..939 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100569.2.1prot_L-digitata_M_contig100569.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100569 439..939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100569.2.1

>prot_L-digitata_M_contig100569.2.1 ID=prot_L-digitata_M_contig100569.2.1|Name=mRNA_L-digitata_M_contig100569.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=167bp
MVRNTGPHRLVLASASPRRVELLAQVGIVPDRIAPADIDETPQRREEPGP
LAKRLALGKAEAVAAANDDAWVLAADTVVGLGRRILGKPENAAEARRFLS
MLSGRRHRVYGGVTVISPTGRASRKLVATTVSFKRLETAEIDIYLESGEW
EGKAGGYAIQGHAGGFV
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mRNA from alignment at L-digitata_M_contig100569:439..939+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100569.2.1 ID=mRNA_L-digitata_M_contig100569.2.1|Name=mRNA_L-digitata_M_contig100569.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=501bp|location=Sequence derived from alignment at L-digitata_M_contig100569:439..939+ (Laminaria digitata LdigPH10_18mv male)
ATGGTCCGGAATACCGGGCCGCACAGGCTTGTGCTCGCGTCGGCGTCGCC GCGCCGCGTGGAGCTGCTTGCCCAGGTCGGGATCGTGCCCGACAGGATCG CCCCCGCTGACATAGACGAGACGCCGCAGCGCCGTGAAGAACCGGGCCCG CTGGCGAAGCGCCTGGCGCTGGGCAAGGCAGAGGCTGTCGCGGCTGCCAA CGATGACGCCTGGGTGCTCGCGGCGGATACCGTTGTCGGGCTTGGCCGCC GGATTCTTGGCAAACCGGAAAACGCGGCGGAAGCCCGGCGGTTCCTGTCG ATGCTGTCGGGGCGGCGGCATCGGGTGTATGGCGGCGTAACGGTAATATC GCCGACCGGCCGGGCGTCGCGGAAACTGGTGGCGACCACCGTCAGCTTCA AACGTCTTGAGACCGCTGAGATCGACATCTACCTCGAGAGCGGGGAGTGG GAAGGCAAAGCCGGCGGCTATGCGATCCAGGGCCATGCCGGCGGTTTTGT C
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Coding sequence (CDS) from alignment at L-digitata_M_contig100569:439..939+

>mRNA_L-digitata_M_contig100569.2.1 ID=mRNA_L-digitata_M_contig100569.2.1|Name=mRNA_L-digitata_M_contig100569.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=501bp|location=Sequence derived from alignment at L-digitata_M_contig100569:439..939+ (Laminaria digitata LdigPH10_18mv male)
ATGGTCCGGAATACCGGGCCGCACAGGCTTGTGCTCGCGTCGGCGTCGCC
GCGCCGCGTGGAGCTGCTTGCCCAGGTCGGGATCGTGCCCGACAGGATCG
CCCCCGCTGACATAGACGAGACGCCGCAGCGCCGTGAAGAACCGGGCCCG
CTGGCGAAGCGCCTGGCGCTGGGCAAGGCAGAGGCTGTCGCGGCTGCCAA
CGATGACGCCTGGGTGCTCGCGGCGGATACCGTTGTCGGGCTTGGCCGCC
GGATTCTTGGCAAACCGGAAAACGCGGCGGAAGCCCGGCGGTTCCTGTCG
ATGCTGTCGGGGCGGCGGCATCGGGTGTATGGCGGCGTAACGGTAATATC
GCCGACCGGCCGGGCGTCGCGGAAACTGGTGGCGACCACCGTCAGCTTCA
AACGTCTTGAGACCGCTGAGATCGACATCTACCTCGAGAGCGGGGAGTGG
GAAGGCAAAGCCGGCGGCTATGCGATCCAGGGCCATGCCGGCGGTTTTGT
C
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