mRNA_L-digitata_M_contig100569.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100569.1.1
Unique NamemRNA_L-digitata_M_contig100569.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100569.1.1 vs. uniprot
Match: A0A0N0KA06_9PROT (Translation initiation factor IF-1 n=6 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0N0KA06_9PROT)

HSP 1 Score: 136 bits (343), Expect = 1.000e-40
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 1 
Query:    1 MAKEELMEFSGTVLELLPNAMFRVVLDNEHEVLAHTSGKMRKNRIRVLAGDRVNVEMTPYDLTKGRITFRFK 216
            MAKE+L+EFSGTV ELLPNAMFRV LDNEHEVLAHTSGKMRKNRIRVLAGDRVNVEMTPYDLTKGRITFRFK
Sbjct:    1 MAKEDLIEFSGTVTELLPNAMFRVKLDNEHEVLAHTSGKMRKNRIRVLAGDRVNVEMTPYDLTKGRITFRFK 72
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BLAST of mRNA_L-digitata_M_contig100569.1.1 vs. uniprot
Match: A0A2D7U042_9PROT (Translation initiation factor IF-1 n=1 Tax=SAR116 cluster bacterium TaxID=2024888 RepID=A0A2D7U042_9PROT)

HSP 1 Score: 134 bits (336), Expect = 1.170e-39
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 MAKEELMEFSGTVLELLPNAMFRVVLDNEHEVLAHTSGKMRKNRIRVLAGDRVNVEMTPYDLTKGRITFRFK 216
            MAKE ++EFSGTV ELLPNAMFRV LDNEHEVLAHTSGKMRKNRIRVLAGDRVNVEMTPYDLTKGRITFRFK
Sbjct:    1 MAKEGVIEFSGTVAELLPNAMFRVKLDNEHEVLAHTSGKMRKNRIRVLAGDRVNVEMTPYDLTKGRITFRFK 72
[Close]
BLAST of mRNA_L-digitata_M_contig100569.1.1 vs. uniprot
Match: A0A1Z8KZQ9_9PROT (Translation initiation factor IF-1 n=7 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1Z8KZQ9_9PROT)

HSP 1 Score: 133 bits (334), Expect = 2.370e-39
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 MAKEELMEFSGTVLELLPNAMFRVVLDNEHEVLAHTSGKMRKNRIRVLAGDRVNVEMTPYDLTKGRITFRFK 216
            MAKE+LMEF+GTV ELLPNAMFRV LDN+HE+LAHTSGKMRKNRIRVLAGDRV VEMTPYDLTKGRITFRFK
Sbjct:    1 MAKEDLMEFNGTVAELLPNAMFRVKLDNDHEILAHTSGKMRKNRIRVLAGDRVTVEMTPYDLTKGRITFRFK 72
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BLAST of mRNA_L-digitata_M_contig100569.1.1 vs. uniprot
Match: IF1_MAGSA (Translation initiation factor IF-1 n=5 Tax=Magnetospirillum TaxID=13134 RepID=IF1_MAGSA)

HSP 1 Score: 132 bits (333), Expect = 3.370e-39
Identity = 64/72 (88.89%), Postives = 70/72 (97.22%), Query Frame = 1 
Query:    1 MAKEELMEFSGTVLELLPNAMFRVVLDNEHEVLAHTSGKMRKNRIRVLAGDRVNVEMTPYDLTKGRITFRFK 216
            MAKE+++EFSGTV ELLPNAMFRV LDN+HE+LAHTSGKMRKNRIRVLAGDRVNVEMTPYDLTKGRITFR+K
Sbjct:    1 MAKEDVIEFSGTVTELLPNAMFRVKLDNDHEILAHTSGKMRKNRIRVLAGDRVNVEMTPYDLTKGRITFRYK 72
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BLAST of mRNA_L-digitata_M_contig100569.1.1 vs. uniprot
Match: IF1_GLUOX (Translation initiation factor IF-1 n=182 Tax=root TaxID=1 RepID=IF1_GLUOX)

HSP 1 Score: 132 bits (331), Expect = 6.800e-39
Identity = 63/72 (87.50%), Postives = 70/72 (97.22%), Query Frame = 1 
Query:    1 MAKEELMEFSGTVLELLPNAMFRVVLDNEHEVLAHTSGKMRKNRIRVLAGDRVNVEMTPYDLTKGRITFRFK 216
            M+KE+L+EF+GTV+ELLPNAMFRV LDNEH +LAHTSGKMRKNRIRVLAGDRVNVEMTPYDL+KGRITFRFK
Sbjct:    1 MSKEDLIEFTGTVMELLPNAMFRVTLDNEHTILAHTSGKMRKNRIRVLAGDRVNVEMTPYDLSKGRITFRFK 72
[Close]
BLAST of mRNA_L-digitata_M_contig100569.1.1 vs. uniprot
Match: A0A2D6JRJ8_9PROT (Translation initiation factor IF-1 n=17 Tax=cellular organisms TaxID=131567 RepID=A0A2D6JRJ8_9PROT)

HSP 1 Score: 132 bits (331), Expect = 6.800e-39
Identity = 63/72 (87.50%), Postives = 71/72 (98.61%), Query Frame = 1 
Query:    1 MAKEELMEFSGTVLELLPNAMFRVVLDNEHEVLAHTSGKMRKNRIRVLAGDRVNVEMTPYDLTKGRITFRFK 216
            MAKEE++EF+GTV ELLPNAMFRVVLDN+HE+LAHT+GKMRK+RIRVLAGDRVNVEMTPYDL+KGRITFRFK
Sbjct:    1 MAKEEVLEFTGTVTELLPNAMFRVVLDNDHEILAHTAGKMRKHRIRVLAGDRVNVEMTPYDLSKGRITFRFK 72
[Close]
BLAST of mRNA_L-digitata_M_contig100569.1.1 vs. uniprot
Match: A0A2E7W644_9PROT (Translation initiation factor IF-1 n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7W644_9PROT)

HSP 1 Score: 132 bits (331), Expect = 6.800e-39
Identity = 63/72 (87.50%), Postives = 70/72 (97.22%), Query Frame = 1 
Query:    1 MAKEELMEFSGTVLELLPNAMFRVVLDNEHEVLAHTSGKMRKNRIRVLAGDRVNVEMTPYDLTKGRITFRFK 216
            MAKEE+MEF+GTV E+LPNAMFRV L+NEHE+LAHTSGKMRKNRIRVLAGD+VNVEMTPYDL+KGRITFRFK
Sbjct:    1 MAKEEMMEFAGTVTEILPNAMFRVKLENEHEILAHTSGKMRKNRIRVLAGDKVNVEMTPYDLSKGRITFRFK 72
[Close]
BLAST of mRNA_L-digitata_M_contig100569.1.1 vs. uniprot
Match: A0A0P0YJF5_9PROT (Translation initiation factor IF-1 n=8 Tax=Acetobacteraceae TaxID=433 RepID=A0A0P0YJF5_9PROT)

HSP 1 Score: 131 bits (329), Expect = 1.370e-38
Identity = 63/72 (87.50%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 MAKEELMEFSGTVLELLPNAMFRVVLDNEHEVLAHTSGKMRKNRIRVLAGDRVNVEMTPYDLTKGRITFRFK 216
            M+KE+++EFSGTV ELLPNAMFRV LDNEH +LAHTSGKMRKNRIRVLAGDRVNVEMTPYDL+KGRITFRFK
Sbjct:    1 MSKEDMIEFSGTVTELLPNAMFRVTLDNEHTILAHTSGKMRKNRIRVLAGDRVNVEMTPYDLSKGRITFRFK 72
[Close]
BLAST of mRNA_L-digitata_M_contig100569.1.1 vs. uniprot
Match: D5BTG2_PUNMI (Translation initiation factor IF-1 n=81 Tax=Bacteria TaxID=2 RepID=D5BTG2_PUNMI)

HSP 1 Score: 131 bits (329), Expect = 1.370e-38
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 MAKEELMEFSGTVLELLPNAMFRVVLDNEHEVLAHTSGKMRKNRIRVLAGDRVNVEMTPYDLTKGRITFRFK 216
            MAKE ++EFSGTV ELLPNAMFRV LDN+HEVLAHTSGKMRKNRIRVLAGDRVNVEMTPYDL+KGRITFRFK
Sbjct:    1 MAKEGVIEFSGTVAELLPNAMFRVKLDNDHEVLAHTSGKMRKNRIRVLAGDRVNVEMTPYDLSKGRITFRFK 72
[Close]
BLAST of mRNA_L-digitata_M_contig100569.1.1 vs. uniprot
Match: A0A2E2YJB9_9PROT (Translation initiation factor IF-1 n=6 Tax=Bacteria TaxID=2 RepID=A0A2E2YJB9_9PROT)

HSP 1 Score: 131 bits (329), Expect = 1.370e-38
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 MAKEELMEFSGTVLELLPNAMFRVVLDNEHEVLAHTSGKMRKNRIRVLAGDRVNVEMTPYDLTKGRITFRFK 216
            MAKE+++E +GT+ ELLPNAMFRV LDNEHEVLAHTSGKMRKNRIRVLAGDRVNVEMTPYDLTKGRITFRFK
Sbjct:    1 MAKEDVLEVAGTISELLPNAMFRVKLDNEHEVLAHTSGKMRKNRIRVLAGDRVNVEMTPYDLTKGRITFRFK 72
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100569.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0N0KA06_9PROT1.000e-4094.44Translation initiation factor IF-1 n=6 Tax=Alphapr... [more]
A0A2D7U042_9PROT1.170e-3993.06Translation initiation factor IF-1 n=1 Tax=SAR116 ... [more]
A0A1Z8KZQ9_9PROT2.370e-3990.28Translation initiation factor IF-1 n=7 Tax=Alphapr... [more]
IF1_MAGSA3.370e-3988.89Translation initiation factor IF-1 n=5 Tax=Magneto... [more]
IF1_GLUOX6.800e-3987.50Translation initiation factor IF-1 n=182 Tax=root ... [more]
A0A2D6JRJ8_9PROT6.800e-3987.50Translation initiation factor IF-1 n=17 Tax=cellul... [more]
A0A2E7W644_9PROT6.800e-3987.50Translation initiation factor IF-1 n=1 Tax=Rhodosp... [more]
A0A0P0YJF5_9PROT1.370e-3887.50Translation initiation factor IF-1 n=8 Tax=Acetoba... [more]
D5BTG2_PUNMI1.370e-3890.28Translation initiation factor IF-1 n=81 Tax=Bacter... [more]
A0A2E2YJB9_9PROT1.370e-3888.89Translation initiation factor IF-1 n=6 Tax=Bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100569contigL-digitata_M_contig100569:215..433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121033.AUCF01000013_gene1645
Preferred nameinfA
PFAMseIF-1a
Model size219
Max annot lvl204441|Rhodospirillales
KEGG koko:K02518
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.14e-42
EggNOG OGsCOG0361@1|root,COG0361@2|Bacteria,1MZFU@1224|Proteobacteria,2UBRU@28211|Alphaproteobacteria,2JT73@204441|Rhodospirillales
DescriptionOne of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
Cds size219
COG categoryJ
BRITEko00000,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406608.4084487-CDS-L-digitata_M_contig100569:214..4331682406608.4084487-CDS-L-digitata_M_contig100569:214..433Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100569 215..433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100569.1.1prot_L-digitata_M_contig100569.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100569 215..433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100569.1.1

>prot_L-digitata_M_contig100569.1.1 ID=prot_L-digitata_M_contig100569.1.1|Name=mRNA_L-digitata_M_contig100569.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=73bp
MAKEELMEFSGTVLELLPNAMFRVVLDNEHEVLAHTSGKMRKNRIRVLAG
DRVNVEMTPYDLTKGRITFRFK*
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mRNA from alignment at L-digitata_M_contig100569:215..433+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100569.1.1 ID=mRNA_L-digitata_M_contig100569.1.1|Name=mRNA_L-digitata_M_contig100569.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=219bp|location=Sequence derived from alignment at L-digitata_M_contig100569:215..433+ (Laminaria digitata LdigPH10_18mv male)
ATGGCAAAAGAAGAACTTATGGAGTTTTCGGGTACCGTTCTCGAGCTTCT
GCCGAACGCGATGTTTCGGGTGGTGCTCGATAACGAACATGAAGTTCTCG
CCCACACGTCGGGCAAGATGCGCAAGAACCGCATCCGTGTGCTCGCAGGC
GACCGCGTCAATGTCGAGATGACGCCGTACGACCTGACCAAGGGCCGCAT
CACCTTCCGCTTCAAATAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100569:215..433+

>mRNA_L-digitata_M_contig100569.1.1 ID=mRNA_L-digitata_M_contig100569.1.1|Name=mRNA_L-digitata_M_contig100569.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=219bp|location=Sequence derived from alignment at L-digitata_M_contig100569:215..433+ (Laminaria digitata LdigPH10_18mv male)
ATGGCAAAAGAAGAACTTATGGAGTTTTCGGGTACCGTTCTCGAGCTTCT
GCCGAACGCGATGTTTCGGGTGGTGCTCGATAACGAACATGAAGTTCTCG
CCCACACGTCGGGCAAGATGCGCAAGAACCGCATCCGTGTGCTCGCAGGC
GACCGCGTCAATGTCGAGATGACGCCGTACGACCTGACCAAGGGCCGCAT
CACCTTCCGCTTCAAATAA
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