mRNA_L-digitata_M_contig100567.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100567.2.1
Unique NamemRNA_L-digitata_M_contig100567.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100567.2.1 vs. uniprot
Match: A0A3D4UI31_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D4UI31_9BACT)

HSP 1 Score: 135 bits (339), Expect = 6.910e-38
Identity = 63/139 (45.32%), Postives = 87/139 (62.59%), Query Frame = 1 
Query:    1 MNKWSEQYQDPSMEELLEALPAEARKAMETLREWVHGSLGGVGRLTYYDVAWRWCETYELRPEGSDLLQTVHLIPDPESPRVALSCQRHFFEQQPLPAIHKSLQSGLGDAVCVGSLAWCCWGMNAPETAAALQELLEQM 417
            M+ W  Q++ PSM+ L++ L ++ RKA+ T+R W+   + G   L+Y DVAW WCE YEL    S  L  V+LIPDP+  +VA+SC R FFE   +  + KSL +GLG  +CVG LAWC W +   + A AL  +LE M
Sbjct:    1 MSIWQRQFETPSMQVLIDGLNSDQRKAITTIRNWLKERVKGRANLSYVDVAWHWCEQYELEKNDSGDLHGVYLIPDPDGSKVAVSCSRRFFESNAVSQLPKSLHAGLGSGICVGHLAWCQWNIVNQDDAQALISMLESM 139
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BLAST of mRNA_L-digitata_M_contig100567.2.1 vs. uniprot
Match: A0A2A4RJE1_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RJE1_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 1.660e-19
Identity = 49/133 (36.84%), Postives = 70/133 (52.63%), Query Frame = 1 
Query:   10 WSEQYQDPSMEELLEALPAEARKAMETLREWVHGSLGGVGRLTYYDVAWRWCETYELRPEGSDLLQTVHLIPDPESPRVALSCQRHFFEQQPLPAIHKSLQSGLGDAVCVGSLAWCCWGMNAPETAAALQELL 408
            W  Q+  P++  L++ L  E+R   E LR+ +   +G   +L +  + WRWCE   L    S  L  VHLI DPE+PRVAL+    FF+  P   + K L SG   A  +G   WC W +   E A AL+E++
Sbjct:   33 WKCQFDQPTLASLVKGLDPESRPMYENLRKSIVKIVGTKPKLEWMGLRWRWCELTSLDDTRS--LIAVHLIADPENPRVALTLSTAFFDAHPPSKLPKGLHSGFTTAPAIGHRTWCEWPIGNQENADALKEMI 163
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100567.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3D4UI31_9BACT6.910e-3845.32Uncharacterized protein n=2 Tax=Phycisphaerae TaxI... [more]
A0A2A4RJE1_9BACT1.660e-1936.84Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100567contigL-digitata_M_contig100567:301..744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size444
Hectar predicted targeting categoryother localisation
Exons1
Cds size444
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406608.3105736-CDS-L-digitata_M_contig100567:300..7441682406608.3105736-CDS-L-digitata_M_contig100567:300..744Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100567 301..744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100567.2.1prot_L-digitata_M_contig100567.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100567 301..744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100567.2.1

>prot_L-digitata_M_contig100567.2.1 ID=prot_L-digitata_M_contig100567.2.1|Name=mRNA_L-digitata_M_contig100567.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=148bp
MNKWSEQYQDPSMEELLEALPAEARKAMETLREWVHGSLGGVGRLTYYDV
AWRWCETYELRPEGSDLLQTVHLIPDPESPRVALSCQRHFFEQQPLPAIH
KSLQSGLGDAVCVGSLAWCCWGMNAPETAAALQELLEQMSPSSVPKL*
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mRNA from alignment at L-digitata_M_contig100567:301..744-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100567.2.1 ID=mRNA_L-digitata_M_contig100567.2.1|Name=mRNA_L-digitata_M_contig100567.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=444bp|location=Sequence derived from alignment at L-digitata_M_contig100567:301..744- (Laminaria digitata LdigPH10_18mv male)
ATGAATAAGTGGAGCGAGCAGTATCAGGATCCGAGCATGGAAGAGCTGCT
CGAGGCGCTTCCTGCGGAGGCACGCAAGGCGATGGAGACGCTGCGGGAAT
GGGTTCACGGGTCGCTTGGGGGCGTTGGCCGATTGACATATTATGATGTG
GCCTGGCGATGGTGTGAGACATATGAACTTCGTCCTGAGGGGTCAGACTT
GCTGCAGACGGTTCATTTGATTCCGGATCCGGAGTCGCCTCGGGTTGCAT
TGAGCTGCCAACGTCACTTCTTTGAGCAGCAACCTTTGCCTGCGATCCAC
AAGTCGCTCCAGAGCGGTTTGGGCGATGCGGTGTGTGTCGGTTCGCTTGC
TTGGTGCTGCTGGGGGATGAATGCTCCTGAGACCGCGGCGGCTTTGCAGG
AGTTGCTAGAGCAGATGAGCCCGAGTTCGGTGCCGAAGCTGTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100567:301..744-

>mRNA_L-digitata_M_contig100567.2.1 ID=mRNA_L-digitata_M_contig100567.2.1|Name=mRNA_L-digitata_M_contig100567.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=444bp|location=Sequence derived from alignment at L-digitata_M_contig100567:301..744- (Laminaria digitata LdigPH10_18mv male)
ATGAATAAGTGGAGCGAGCAGTATCAGGATCCGAGCATGGAAGAGCTGCT
CGAGGCGCTTCCTGCGGAGGCACGCAAGGCGATGGAGACGCTGCGGGAAT
GGGTTCACGGGTCGCTTGGGGGCGTTGGCCGATTGACATATTATGATGTG
GCCTGGCGATGGTGTGAGACATATGAACTTCGTCCTGAGGGGTCAGACTT
GCTGCAGACGGTTCATTTGATTCCGGATCCGGAGTCGCCTCGGGTTGCAT
TGAGCTGCCAACGTCACTTCTTTGAGCAGCAACCTTTGCCTGCGATCCAC
AAGTCGCTCCAGAGCGGTTTGGGCGATGCGGTGTGTGTCGGTTCGCTTGC
TTGGTGCTGCTGGGGGATGAATGCTCCTGAGACCGCGGCGGCTTTGCAGG
AGTTGCTAGAGCAGATGAGCCCGAGTTCGGTGCCGAAGCTGTAG
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