mRNA_L-digitata_M_contig100567.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100567.1.1
Unique NamemRNA_L-digitata_M_contig100567.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100567.1.1 vs. uniprot
Match: A0A2D9CH37_9BACT (D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9CH37_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 5.280e-16
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:   88 LCAQGVLAGPLDRETQRLINGTDLGGGKASVYVVDLDTGEELASYRSDIGMIP 246
            LCAQ  LAGPLDR+T+RLI  T+LGGG A+VY+ DLDTGEELASY SD  +IP
Sbjct:   34 LCAQTALAGPLDRQTERLITSTNLGGGTAAVYIADLDTGEELASYESDEALIP 86
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BLAST of mRNA_L-digitata_M_contig100567.1.1 vs. uniprot
Match: A0A2A4RKC2_9BACT (D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RKC2_9BACT)

HSP 1 Score: 70.5 bits (171), Expect = 2.430e-12
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:   46 SLRGRVMACVAGLVLCAQGVLAGPLDRETQRLINGTDLGGGKASVYVVDLDTGEELASYRSDIGMIP 246
            S + ++      L +CA   L GPLD++T++LI   ++GGG ASVY+VDLDTGEELA Y     M+P
Sbjct:   24 SRQSKIGVVAVALAICASLALGGPLDKKTKQLITNANIGGGTASVYIVDLDTGEELADYHGTRAMVP 90
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100567.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2D9CH37_9BACT5.280e-1671.70D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-ala... [more]
A0A2A4RKC2_9BACT2.430e-1247.76D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-ala... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100567contigL-digitata_M_contig100567:1..246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size246
Hectar predicted targeting categorysignal peptide
Exons1
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406608.2852736-CDS-L-digitata_M_contig100567:0..2461682406608.2852736-CDS-L-digitata_M_contig100567:0..246Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100567 1..246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100567.1.1prot_L-digitata_M_contig100567.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100567 1..246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100567.1.1

>prot_L-digitata_M_contig100567.1.1 ID=prot_L-digitata_M_contig100567.1.1|Name=mRNA_L-digitata_M_contig100567.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=82bp
MAVNKLSDSILVSGPSLRGRVMACVAGLVLCAQGVLAGPLDRETQRLING
TDLGGGKASVYVVDLDTGEELASYRSDIGMIP
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mRNA from alignment at L-digitata_M_contig100567:1..246-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100567.1.1 ID=mRNA_L-digitata_M_contig100567.1.1|Name=mRNA_L-digitata_M_contig100567.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=246bp|location=Sequence derived from alignment at L-digitata_M_contig100567:1..246- (Laminaria digitata LdigPH10_18mv male)
ATGGCTGTGAACAAGCTGTCTGATTCAATTCTGGTATCTGGCCCGTCCTT
GCGTGGACGCGTGATGGCGTGTGTCGCGGGGCTTGTGCTGTGTGCACAGG
GCGTGCTGGCGGGGCCTTTGGATCGCGAGACACAGCGCTTGATCAATGGC
ACCGACCTTGGAGGCGGGAAGGCCTCCGTGTATGTGGTCGATCTGGACAC
TGGCGAGGAGTTGGCGAGTTATCGCTCAGATATAGGGATGATTCCC
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Coding sequence (CDS) from alignment at L-digitata_M_contig100567:1..246-

>mRNA_L-digitata_M_contig100567.1.1 ID=mRNA_L-digitata_M_contig100567.1.1|Name=mRNA_L-digitata_M_contig100567.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=246bp|location=Sequence derived from alignment at L-digitata_M_contig100567:1..246- (Laminaria digitata LdigPH10_18mv male)
ATGGCTGTGAACAAGCTGTCTGATTCAATTCTGGTATCTGGCCCGTCCTT
GCGTGGACGCGTGATGGCGTGTGTCGCGGGGCTTGTGCTGTGTGCACAGG
GCGTGCTGGCGGGGCCTTTGGATCGCGAGACACAGCGCTTGATCAATGGC
ACCGACCTTGGAGGCGGGAAGGCCTCCGTGTATGTGGTCGATCTGGACAC
TGGCGAGGAGTTGGCGAGTTATCGCTCAGATATAGGGATGATTCCC
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