mRNA_L-digitata_M_contig100538.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100538.1.1
Unique NamemRNA_L-digitata_M_contig100538.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100538.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100538contigL-digitata_M_contig100538:36..224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog472759.Nhal_0823
PFAMsOEP
Model size189
Max annot lvl135613|Chromatiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000172
EggNOG OGsCOG1538@1|root,COG1538@2|Bacteria,1MWX5@1224|Proteobacteria,1S4SH@1236|Gammaproteobacteria,1WZF6@135613|Chromatiales
DescriptionOuter membrane efflux protein
Cds size189
COG categoryMU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406608.0960007-CDS-L-digitata_M_contig100538:35..2241682406608.0960007-CDS-L-digitata_M_contig100538:35..224Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100538 36..224 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100538.1.1prot_L-digitata_M_contig100538.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100538 36..224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100538.1.1

>prot_L-digitata_M_contig100538.1.1 ID=prot_L-digitata_M_contig100538.1.1|Name=mRNA_L-digitata_M_contig100538.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=63bp
AQSEPRFDLVLVARQLLFDGGRTWAALKQTEDRRARVDALHDSVLNNVRL
DVVRAFYRYESAR
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mRNA from alignment at L-digitata_M_contig100538:36..224-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100538.1.1 ID=mRNA_L-digitata_M_contig100538.1.1|Name=mRNA_L-digitata_M_contig100538.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=189bp|location=Sequence derived from alignment at L-digitata_M_contig100538:36..224- (Laminaria digitata LdigPH10_18mv male)
GCCCAAAGCGAACCACGCTTCGACCTGGTGCTCGTCGCGCGCCAGTTGCT
GTTCGATGGAGGGCGCACTTGGGCGGCCCTGAAGCAGACCGAGGACCGCC
GGGCCCGTGTGGATGCCCTGCACGACTCGGTGCTCAATAACGTGCGCCTC
GACGTGGTCCGCGCCTTTTACCGCTACGAGTCGGCGCGT
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Coding sequence (CDS) from alignment at L-digitata_M_contig100538:36..224-

>mRNA_L-digitata_M_contig100538.1.1 ID=mRNA_L-digitata_M_contig100538.1.1|Name=mRNA_L-digitata_M_contig100538.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=189bp|location=Sequence derived from alignment at L-digitata_M_contig100538:36..224- (Laminaria digitata LdigPH10_18mv male)
GCCCAAAGCGAACCACGCTTCGACCTGGTGCTCGTCGCGCGCCAGTTGCT
GTTCGATGGAGGGCGCACTTGGGCGGCCCTGAAGCAGACCGAGGACCGCC
GGGCCCGTGTGGATGCCCTGCACGACTCGGTGCTCAATAACGTGCGCCTC
GACGTGGTCCGCGCCTTTTACCGCTACGAGTCGGCGCGT
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