mRNA_L-digitata_M_contig100534.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100534.1.1
Unique NamemRNA_L-digitata_M_contig100534.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100534.1.1 vs. uniprot
Match: A0A6H5JKU1_9PHAE (ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKU1_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 7.720e-35
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:    7 WVHVVGMYFLTAVCLYFLKTEFRTYIGLRQRYLQQRKAHMRTIMLDVPSDARSNAILESYFGYLYPDSVLTAVCTQ 234
            WVHV G+Y +T VCL FLK EFR YI LRQRYLQQRK HMRTIMLDVP+DARSNAILESYFGYLYPD+VLTAVCTQ
Sbjct:  170 WVHVTGIYVVTVVCLLFLKAEFRAYIRLRQRYLQQRKPHMRTIMLDVPADARSNAILESYFGYLYPDAVLTAVCTQ 245
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BLAST of mRNA_L-digitata_M_contig100534.1.1 vs. uniprot
Match: A0A7S3UXJ8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXJ8_HETAK)

HSP 1 Score: 68.9 bits (167), Expect = 6.740e-12
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    7 WVHVVGMYFLTAVCLYFLKTEFRTYIGLRQRYLQQRKAHMRTIMLD-VPSDARSNAILESYFGYLYPDSVLTAVCTQ 234
            W HVVGMY LTA+ ++ L  EFRTY  LR  +L++R+A  R+++++ VP   RS A L +YF  LYP  V+     Q
Sbjct:  148 WFHVVGMYLLTAITMWQLVVEFRTYTRLRHEFLRRRRALFRSVLVEEVPRPLRSQATLRAYFEKLYPGQVVEVFLCQ 224
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100534.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKU1_9PHAE7.720e-3584.21ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7S3UXJ8_HETAK6.740e-1245.45Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100534contigL-digitata_M_contig100534:229..462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LQB2
PFAMsPHM7_cyt,RSN1_7TM,RSN1_TM
Model size234
Max annot lvl2759|Eukaryota
KEGG koko:K21989
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.92e-31
EggNOG OGsCOG5594@1|root,KOG1134@2759|Eukaryota
Descriptionion transport
Cds size210
COG categoryI
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406608.0376773-CDS-L-digitata_M_contig100534:228..4381682406608.0376773-CDS-L-digitata_M_contig100534:228..438Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100534 229..438 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406608.0485256-UTR-L-digitata_M_contig100534:438..4621682406608.0485256-UTR-L-digitata_M_contig100534:438..462Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100534 439..462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100534.1.1prot_L-digitata_M_contig100534.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100534 229..438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100534.1.1

>prot_L-digitata_M_contig100534.1.1 ID=prot_L-digitata_M_contig100534.1.1|Name=mRNA_L-digitata_M_contig100534.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=70bp
MYFLTAVCLYFLKTEFRTYIGLRQRYLQQRKAHMRTIMLDVPSDARSNAI
LESYFGYLYPDSVLTAVCTQ
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mRNA from alignment at L-digitata_M_contig100534:229..462-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100534.1.1 ID=mRNA_L-digitata_M_contig100534.1.1|Name=mRNA_L-digitata_M_contig100534.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=234bp|location=Sequence derived from alignment at L-digitata_M_contig100534:229..462- (Laminaria digitata LdigPH10_18mv male)
CGCAGATGGGTGCATGTGGTCGGCATGTACTTCCTGACCGCGGTGTGCCT
GTACTTCCTCAAGACAGAGTTCCGCACGTACATCGGGCTGAGGCAGCGCT
ACCTCCAGCAGAGAAAGGCGCACATGCGGACGATCATGCTGGACGTGCCC
TCCGACGCTAGAAGCAACGCCATCTTGGAGAGCTACTTCGGCTACCTCTA
CCCCGACAGCGTGCTGACCGCCGTGTGTACCCAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100534:229..462-

>mRNA_L-digitata_M_contig100534.1.1 ID=mRNA_L-digitata_M_contig100534.1.1|Name=mRNA_L-digitata_M_contig100534.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=210bp|location=Sequence derived from alignment at L-digitata_M_contig100534:229..462- (Laminaria digitata LdigPH10_18mv male)
ATGTACTTCCTGACCGCGGTGTGCCTGTACTTCCTCAAGACAGAGTTCCG
CACGTACATCGGGCTGAGGCAGCGCTACCTCCAGCAGAGAAAGGCGCACA
TGCGGACGATCATGCTGGACGTGCCCTCCGACGCTAGAAGCAACGCCATC
TTGGAGAGCTACTTCGGCTACCTCTACCCCGACAGCGTGCTGACCGCCGT
GTGTACCCAG
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