mRNA_L-digitata_M_contig10053.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10053.2.1
Unique NamemRNA_L-digitata_M_contig10053.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10053.2.1 vs. uniprot
Match: D8LSZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSZ2_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 4.180e-46
Identity = 102/173 (58.96%), Postives = 120/173 (69.36%), Query Frame = 3 
Query:    3 EFFEDARALFGSLAFGVEGDVEASEGVAEAGDEKTRGRD-RDLSVEILLDQLQAMKNGEPRNQLRYIDVRFTKAAIRRGGIGERVTLPAFLACLLIHSREVASSLLERPPPDGYSERLEACPALWSDGR--------ITPQSCSGDGG--DATAESLGRKKKGARKGVN-GRG 485
            EFFED   LFGSLAF  +     S      GD  T+ R  R++++ ILLDQLQ MK  EPRN LRYIDVR T+ A+RRGG+GER TLPAFLACLL+HS +VAS+LLE+PP DGY++RLEAC  LWSDG          +PQS  GDGG  DA  E+ GR+KKGARKG   GRG
Sbjct:  139 EFFEDIHTLFGSLAFRSDRRRSISSFAGGRGDGGTKERAAREVNLRILLDQLQVMK-AEPRNHLRYIDVRSTEEAVRRGGLGERATLPAFLACLLLHSDDVASALLEKPPMDGYTDRLEACLGLWSDGSGNRGGGRASSPQSTPGDGGRADAVVETSGRRKKGARKGSGAGRG 310
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10053.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSZ2_ECTSI4.180e-4658.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10053contigL-digitata_M_contig10053:1452..6129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1392
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001960.1
Cds size333
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10053.2.1prot_L-digitata_M_contig10053.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10053 2350..5968 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406607.9676826-UTR-L-digitata_M_contig10053:1451..23491682406607.9676826-UTR-L-digitata_M_contig10053:1451..2349Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10053 1452..2349 -
1682406608.0097933-UTR-L-digitata_M_contig10053:5968..61291682406608.0097933-UTR-L-digitata_M_contig10053:5968..6129Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10053 5969..6129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406607.9752128-CDS-L-digitata_M_contig10053:2349..24011682406607.9752128-CDS-L-digitata_M_contig10053:2349..2401Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10053 2350..2401 -
1682406607.9823585-CDS-L-digitata_M_contig10053:3338..34271682406607.9823585-CDS-L-digitata_M_contig10053:3338..3427Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10053 3339..3427 -
1682406607.991499-CDS-L-digitata_M_contig10053:4655..48151682406607.991499-CDS-L-digitata_M_contig10053:4655..4815Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10053 4656..4815 -
1682406608.0007205-CDS-L-digitata_M_contig10053:5936..59681682406608.0007205-CDS-L-digitata_M_contig10053:5936..5968Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10053 5937..5968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10053.2.1

>prot_L-digitata_M_contig10053.2.1 ID=prot_L-digitata_M_contig10053.2.1|Name=mRNA_L-digitata_M_contig10053.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=111bp
MKNGEPRNQLRYIDVRFTKAAIRRGGIGERVTLPAFLACLLIHSREVASS
LLERPPPDGYSERLEACPALWSDGRITPQSCSGDGGDATAESLGRKKKGA
RKGVNGRGAP*
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mRNA from alignment at L-digitata_M_contig10053:1452..6129-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10053.2.1 ID=mRNA_L-digitata_M_contig10053.2.1|Name=mRNA_L-digitata_M_contig10053.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=4678bp|location=Sequence derived from alignment at L-digitata_M_contig10053:1452..6129- (Laminaria digitata LdigPH10_18mv male)
AGGAATTTTTCGAGGACGCACGAGCCCTGTTCGGTTCCCTTGCATTTGGA
GTTGAAGGTGATGTGGAGGCGAGTGAAGGCGTCGCCGAAGCAGGGGATGA
AAAGACGCGGGGCCGTGACCGTGACCTCAGCGTTGAAATTTTGTTAGACC
AGCTTCAAGCCATGAAGAACGGGGAGCCACGGAACCAGCTCAGGTAAAAT
ATTGGGGGCGGGGGCGGGGGGCGGGGGGGGGGGTGGGGCTCCAATTGGTT
GTTCTTGCTGCCTATTATATATAATAGGTGTTCGTTTGCTGCGTTCCTTG
ATTTTGGCTATTGCGGGAGAACAAATAGGGCAACAAGCATAGAGGAAGTA
ATGTTTTGTGGTGTCCATCGCTACGGTAGAAACCCGATCAGGACCTGAGA
AAGAGAGGATTCAATAAATCGGCATTTATTGGAGAGGCACCTCGCCCCGA
AATACAATTTTTTCTTGTTATCCTCAGTTTTTCAAGCTTGTCAAGGACGA
TTTCGATTTTTTTTTTTGGTGCGATCGATGGTTGTCGTCAATACCTATTA
TATGTACCCTTGCTTGCATAGAATCTTACTCTTAAGAACAGCCATCTCTT
CCAAAACAAAAAAAAACAAAAAAGAGCTTTTTTTTTTTCGATTTTCATTC
TCACCAGAAAGGCCATTCTCATTTAGGAAAATCGGCTGTTTAGGTGGCGT
TTTCACGTTTTTAGCTCAATTGTCTGAAATCTAGCCCGTGGCCACAAAAA
AAAAAGAAGGCGAAAAGTGTCCCGTTGGAGGACAAAAACAAACACAAAAT
CACACTATACGAAGTATATACGAAGTATGTATAGACTAGTTAGTCTACGT
GGCTCTACATAGGGAAACCTGGTTCTATAGTGTACCCCAGGCGTTACGCA
TACGGGTTTAGGTGGGTGTTACACGTGGAATATGTGTACCCACTTCTCTT
GGAGACAAAAAAAGAAGTAACAACTCAATCGAGAAGAAACGTGCTACTAT
CAGCACCGACATCCCTGCGTCCCATTGCGGTACGTACTGCATGTAGCCCC
ACCCCCTCCGTGGTAGCGTTCTTCACCAAATCGCATGCCAAACAGCGGGA
GCGCAACAGCGCCCCCCCCCACCCCCCCCCCCTGTGGTAACATTCTTCAC
ATAATCGTATGCCAAAAAACTGGAATTCAACAGCCTCCCCCCCCCACCAC
CCCTATGATAGCATTCTTCACATAAAAATCGCATGCCAAATAGCAGGAGC
GCAACAGTCCCCCCCCCCCCGCGCCCTCCTTTCTCCCTTCACCCATATAC
ACCCACGACGCAAGGTACATAGATGTGCGGTTCACCAAGGCGGCGATTCG
AAGGGGGGGGATCGGGGAGAGAGTGACGTTGCCCGCTTTCTTGGCGTGCC
TGCTGATACACTCCCGCGAGGTTGCGTCGAGCTTGCTGGAGAGACCTCCA
CCTGACGGTTACTCGGAGCGCCTGGTAAGCGAGGAAATGAGGAAATGATA
AATGACGGCATGATTCCTCCGCATTTGATTCCACCGCGTTTGATTCCACC
GCATTTAATTCCACCGCGTTTGATTCCACAACAGTATCTCCACCTGACGG
TTACTCGGAGCGCCTGGTATGAACGGAAATGACGACATGATTACACCGCG
TTTGATTACACCGCGCTTGATTCTACCGCATTTAGTTCCACCGCGTTTGA
TTCCACTACAATACCTCCACCTGACGGTTACTCGGAGCGCCTGGTATATG
AGGAAATGACGGCATGATTACACCGCGTTTGATACACCACCGCATTTGAA
TCCACCGCGTTTGATTCCACCGCGGGTGATTGCACCGCGTTTAATTACAC
CGCGTTTGATTCCACCCCGTTTAATTCCACCGACTTTGATTCCACCGCGT
TTGATTCCACCGAGTTTGATTCCACCGCGTTTGATTCCACCGTGTTTAAT
TCCACCGCGTGTGATTCCACCGCGTGTGATTCCACCGCGTTTGTTTCTAC
CGCGTTTAATTACACCGCGTTAAGTTTCCTCGCGTTTGATTCCACCGCGT
TTGATTCCACCGCGTTTAATTCCACCGCGGTTAGTTTCACCGCGTTTTAT
CCCACCGCGCTTAATTCCACCGCTAATTCCATCGCGTTGAAATCCACCGC
GTTTGATTCCACCGCGTTTGATTCCACCACATTCTTTTGAGCGGTCGGAG
AAGAGTCCGCCCAAAAGCCGCGACCCGCACAGCACGCGACACCACTTCAC
CCTCTTAGGACTGCACTCCCGTTTCGGGAACAAATCACTTAGAAATAGAG
TTCTAAACACTGTACGATTCTGTACAGTGCAGGAGTGTAAGGGTTAACGC
TTTAACCACTGCAAAAATTGCCCCTCTCTATTTCACGTAGTTTTCCTCAT
ATCGTGGGTGCACTAGCAAAGGGGTTAAGAACTCTTACTATAGGCTCAAG
TTGTTGTGTGAGGCAGGCTCAAGTTGTTGTGTGAGGCAGGCTCAAGTTCT
TATGTAAGGAATGAGTCTTACACTAACTTCAGTATTTAAATAAATGAAAA
ATGCTTTTTCGTACGATTCGTGCACTAATCGAGCCCAAACTGTTGTCGCG
CACTGCAATATCGGGTCTTTTGAATGACGTACAGACAACTCCCAAAATAT
TAAGAACCTGCCACGCACCGTGTATTGTTGGGGTTTCGAATGCCGTACAC
AGGAGGCGTGTCCTGCCCTGTGGAGCGACGGAAGAATTACCCCTCAGTCT
TGTTCGGGAGATGGGGGCGACGCGACCGCGGAGTCTCTAGGGTGAGAGTC
GCGGGGTGTGACCCACGAAGTATATTATTATTATTATTATTATTATGCTT
GCCATCCGACAATGTGCAAGCATGAGCTTCAACGTTGATCACTCANNNNN
NNNNNGAAACCTATGCACAAAGTCTAACTACCTTCTATGGCTACTTCCCG
CTATGCTTTATCTACAATAGTCCATTTGTTGTCCTTGCTTTATTTTTTTG
TATTTAAAAAACCGTCAGCTGTGAGATCGAGGATTTTAGGCGAAAAGTCC
TCTTTGCAAGCTGCATGTGATACTTCTGTATTCTATTGGCTGACTCAAAG
GGTGTTCATTTCTTACGAAGCGCGGGGAATGCCATAATGTACCGCGTGCC
ACCAATGCTTTACGGCGTACTGTATATAATTGCCTGAACTGCACGCCGAC
TACAGCAGTAGTAGTAGTTTAGTCACCATGCTTGCTTTGTCCTCCATTGA
GAGTTGTTGTTTTTTCAGTCGGCGTTGAGCGTGTGAGTAGCGGAAGACAG
ATTTTCCCACGCATTGCAGTCAAATATTATTGCACCTATAATATTCCCGT
GGACGCACATTTAACTTTACGCCCTGCACAGCAAGCCGGGCAAGCCATGA
CTGCTGTAGTCTGTGATGGGTTTGCCTCGTGTTTAAAGAGGCCAGGGCTA
GAGCTAAGTAACGCAAAATTGAACCAACTCCATTCACACGCCCCATACAC
GACAAAAAAGCATGGCCTGTGGTCACCCTGTGCGTTGTCACACGCTCGAG
CTACGAGTAATAGTCTAATTATTACGACAACACGAGTTAATTAGTAGTAA
AAATAAAGTTGCTACTCGTACGAGTGGCGGTGGCTGATGATGCGGTCCCG
TGTGTCCGCAACAACAAACAGAACAAACAGCCGATCTCGTTTTTTTTTCA
TTTTTTTTTTTCATTTTTGACACCACAGGCGAAAGAAGAAGGGCGCTCGC
AAGGGGGTCAACGGAAGGGGCGCCCCATGACTTGCTTTTGGCCGATTTGC
TGGAGGGCTGCATCATAAGACCGTTAGGCCGGAGGGCTGTATCATAAGAC
CGTTAGGCTGGAGGGCTGTATCATAAGACCGTTAGGCCGGAGGGCTGTAT
CATAAGACCGTTAGGCTGGAGGGCTGTATCATAAGACCGTTAGGCTGGAG
GGCTGTATCATACCAGTATGACCCTAAATATAGGGGACATTTAGATGGCC
AAAAAAAGTACAAATGCACCTTATATTTATGGTCAGACTGATATTTGATA
GGACTTTTTCGCCCAGATTCTTCACCCCGACCGACTGGGAAATTTCTCGG
AAGGAAGATACAGCTCTGTCCGGCAATATAAGCACCGTTTTTACATTAAT
ATCCATATAACACGTCGCTTATATTTCCGGACAGATTGGTAGATCTGTTA
GAGCTGTGAGTCGGCACCACTTAAGTCACCAACAACTGACTTAATAGTAG
TTAGTCGTTTCCTCGGGGGTGCCGACCATCCGACTTATTGCTTAAAAAAA
ATTCCATACTCGTACGTAGGAAGGACTTTTGAATGCGGGATACATAATGT
TTTCTTCTTTGGGCGGGACCCCCTCGGCCGGGGCATGGGGCAGGCCTGTG
ATTTGGCTCGCTTCATTTAGCTGACTTAACTCACAGAGGGGAAAATTGGC
ACTAAAAAGCGACGGATTACACCAACAGCCACTGCGTGATTGGGGGATGA
TACAAGTTTTGGTGTCCGAGTTACAATGCAAGGGCTCGTACGGCACAGGC
GCAACATGATCTCACCCGTGCCGCTGGGCGCTCACGCTGCTCGTAGACGG
TCGGTAAATAACACCAAGAAGAAGTGATCATTGTTTTGGTCACGATAAGA
ACTATACCACTCTGGGCGGGAATATAAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10053:1452..6129-

>mRNA_L-digitata_M_contig10053.2.1 ID=mRNA_L-digitata_M_contig10053.2.1|Name=mRNA_L-digitata_M_contig10053.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=333bp|location=Sequence derived from alignment at L-digitata_M_contig10053:1452..6129- (Laminaria digitata LdigPH10_18mv male)
ATGAAGAACGGGGAGCCACGGAACCAGCTCAGGTACATAGATGTGCGGTT
CACCAAGGCGGCGATTCGAAGGGGGGGGATCGGGGAGAGAGTGACGTTGC
CCGCTTTCTTGGCGTGCCTGCTGATACACTCCCGCGAGGTTGCGTCGAGC
TTGCTGGAGAGACCTCCACCTGACGGTTACTCGGAGCGCCTGGAGGCGTG
TCCTGCCCTGTGGAGCGACGGAAGAATTACCCCTCAGTCTTGTTCGGGAG
ATGGGGGCGACGCGACCGCGGAGTCTCTAGGGCGAAAGAAGAAGGGCGCT
CGCAAGGGGGTCAACGGAAGGGGCGCCCCATGA
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