mRNA_L-digitata_M_contig100438.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100438.2.1
Unique NamemRNA_L-digitata_M_contig100438.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100438.2.1 vs. uniprot
Match: A0A2D7FNB3_9PROT (Integration host factor subunit alpha n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FNB3_9PROT)

HSP 1 Score: 176 bits (446), Expect = 1.030e-54
Identity = 92/101 (91.09%), Postives = 96/101 (95.05%), Query Frame = 1 
Query:    1 MTDETVTRADLSEAVYQEVGLSRNESADLVESVLSEIADTLTSGETVKISSFGSFSVRQKGQRVGRNPKTGEEVPILPRKVLVFRASNVLKNRINGEAGGE 303
            M DETVTRADLSEAVYQEVGLSRNESA+LVESVLSEIADTLT GETVKISSFGSFSVRQKGQRVGRNPKTGEEVPILPRKVL+FRASNVLKNR+NG+   E
Sbjct:    1 MADETVTRADLSEAVYQEVGLSRNESAELVESVLSEIADTLTIGETVKISSFGSFSVRQKGQRVGRNPKTGEEVPILPRKVLIFRASNVLKNRVNGDTAEE 101
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BLAST of mRNA_L-digitata_M_contig100438.2.1 vs. uniprot
Match: A0A2S6Q6X5_9PROT (Integration host factor subunit alpha n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q6X5_9PROT)

HSP 1 Score: 169 bits (427), Expect = 1.030e-51
Identity = 89/101 (88.12%), Postives = 95/101 (94.06%), Query Frame = 1 
Query:    1 MTDETVTRADLSEAVYQEVGLSRNESADLVESVLSEIADTLTSGETVKISSFGSFSVRQKGQRVGRNPKTGEEVPILPRKVLVFRASNVLKNRINGEAGGE 303
            M + TVTRADLSEAVYQEVGLSRNESADLVESVLSEIA TLT+GETVKISSFGSFSVRQKGQRVGRNPKTGEEVPILPRKVL+FRASNVLKN IN ++ G+
Sbjct:    1 MVENTVTRADLSEAVYQEVGLSRNESADLVESVLSEIAATLTNGETVKISSFGSFSVRQKGQRVGRNPKTGEEVPILPRKVLIFRASNVLKNMINNDSLGQ 101
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BLAST of mRNA_L-digitata_M_contig100438.2.1 vs. uniprot
Match: A0A2D8PPP6_9PROT (Integration host factor subunit alpha (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PPP6_9PROT)

HSP 1 Score: 166 bits (420), Expect = 3.640e-51
Identity = 87/95 (91.58%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:    1 MTDETVTRADLSEAVYQEVGLSRNESADLVESVLSEIADTLTSGETVKISSFGSFSVRQKGQRVGRNPKTGEEVPILPRKVLVFRASNVLKNRIN 285
            M ++TVTRADLSEAVYQEVGLSRNESADLVESVLSEIAD+LT GETVKISSFGSFSVRQKGQR+GRNPKTGEEVPILPRKVLVFRASNVLK+ IN
Sbjct:    1 MAEKTVTRADLSEAVYQEVGLSRNESADLVESVLSEIADSLTHGETVKISSFGSFSVRQKGQRIGRNPKTGEEVPILPRKVLVFRASNVLKSLIN 95
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BLAST of mRNA_L-digitata_M_contig100438.2.1 vs. uniprot
Match: A0A520NNV8_9PROT (Integration host factor subunit alpha n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NNV8_9PROT)

HSP 1 Score: 167 bits (423), Expect = 4.200e-51
Identity = 93/124 (75.00%), Postives = 100/124 (80.65%), Query Frame = 1 
Query:    1 MTDETVTRADLSEAVYQEVGLSRNESADLVESVLSEIADTLTSGETVKISSFGSFSVRQKGQRVGRNPKTGEEVPILPRKVLVFRASNVLKNRINGEAGGEEDADGGFSTTDEAGAAHQQPDTP 372
            M + TVTRADLSEAVYQEVGLSRNESA LVESVLSEIADTLT GETVKISSFGSFSVRQKGQR+GRNPKTG+EVPILPRKVLVFRASNVLK+ IN   G +   DG    T+ +   HQ    P
Sbjct:    1 MAENTVTRADLSEAVYQEVGLSRNESAILVESVLSEIADTLTRGETVKISSFGSFSVRQKGQRIGRNPKTGQEVPILPRKVLVFRASNVLKSMINSGTG-DNSVDGAALPTEGSAPVHQSQTAP 123
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BLAST of mRNA_L-digitata_M_contig100438.2.1 vs. uniprot
Match: A0A369THD8_9PROT (Integration host factor subunit alpha n=1 Tax=Ferruginivarius sediminum TaxID=2661937 RepID=A0A369THD8_9PROT)

HSP 1 Score: 158 bits (400), Expect = 4.320e-48
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 1 
Query:    1 MTDETVTRADLSEAVYQEVGLSRNESADLVESVLSEIADTLTSGETVKISSFGSFSVRQKGQRVGRNPKTGEEVPILPRKVLVFRASNVLKNRIN 285
            M+++TVTRADLSEAVYQEVGLSRNESA LVESVL EI+D L  GE VKISSFGSF+VRQKGQRVGRNPKTGEEVPILPRKVLVFRAS+VLKNRIN
Sbjct:    1 MSNDTVTRADLSEAVYQEVGLSRNESATLVESVLDEISDALVRGEPVKISSFGSFAVRQKGQRVGRNPKTGEEVPILPRKVLVFRASHVLKNRIN 95
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BLAST of mRNA_L-digitata_M_contig100438.2.1 vs. uniprot
Match: A0A437QYQ6_9PROT (Integration host factor subunit alpha n=1 Tax=Hwanghaeella grinnelliae TaxID=2500179 RepID=A0A437QYQ6_9PROT)

HSP 1 Score: 157 bits (397), Expect = 1.060e-47
Identity = 80/95 (84.21%), Postives = 90/95 (94.74%), Query Frame = 1 
Query:    1 MTDETVTRADLSEAVYQEVGLSRNESADLVESVLSEIADTLTSGETVKISSFGSFSVRQKGQRVGRNPKTGEEVPILPRKVLVFRASNVLKNRIN 285
            M ++TVTRA+LSEAVYQEVGLSRNESADLVE+VL E++D LT GE+VKISSFGSFSVRQKG+R+GRNPKTGEEVPILPRKVLVFR S+VLKNRIN
Sbjct:    1 MVEKTVTRAELSEAVYQEVGLSRNESADLVEAVLGEMSDALTRGESVKISSFGSFSVRQKGERIGRNPKTGEEVPILPRKVLVFRPSHVLKNRIN 95
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BLAST of mRNA_L-digitata_M_contig100438.2.1 vs. uniprot
Match: K2JQY4_9PROT (Integration host factor subunit alpha n=4 Tax=Oceanibaculum TaxID=659693 RepID=K2JQY4_9PROT)

HSP 1 Score: 157 bits (397), Expect = 1.160e-47
Identity = 81/101 (80.20%), Postives = 92/101 (91.09%), Query Frame = 1 
Query:    1 MTDETVTRADLSEAVYQEVGLSRNESADLVESVLSEIADTLTSGETVKISSFGSFSVRQKGQRVGRNPKTGEEVPILPRKVLVFRASNVLKNRINGEAGGE 303
            MT++TVTRA LSEAVYQEVGLSRNESADLVE+VL+E+AD L  GE VKISSFGSFSVRQKG+R+GRNPKTGEEVPILPR+VLVFR S+VLKNRIN +  G+
Sbjct:    1 MTEKTVTRAQLSEAVYQEVGLSRNESADLVETVLNEVADALERGEMVKISSFGSFSVRQKGRRIGRNPKTGEEVPILPRRVLVFRPSHVLKNRINAQLTGK 101
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BLAST of mRNA_L-digitata_M_contig100438.2.1 vs. uniprot
Match: A0A6N7F479_9PROT (Integration host factor subunit alpha n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7F479_9PROT)

HSP 1 Score: 157 bits (397), Expect = 1.490e-47
Identity = 82/96 (85.42%), Postives = 89/96 (92.71%), Query Frame = 1 
Query:    1 MTDETVTRADLSEAVYQEVGLSRNESADLVESVLSEIADTLTSGETVKISSFGSFSVRQKGQRVGRNPKTGEEVPILPRKVLVFRASNVLKNRING 288
            M   TVTRA LSE+VYQEVGLSRNESA+LVE+VL+EIADTLT GETVKISSFGSFSVRQKG+R GRNPKTGEEVPI PR+VLVFRASNVLK+RING
Sbjct:    1 MAGTTVTRAQLSESVYQEVGLSRNESAELVENVLNEIADTLTRGETVKISSFGSFSVRQKGERTGRNPKTGEEVPIKPRRVLVFRASNVLKSRING 96
[Close]
BLAST of mRNA_L-digitata_M_contig100438.2.1 vs. uniprot
Match: UPI000F8C8034 (integration host factor subunit alpha n=1 Tax=Aquabacter cavernae TaxID=2496029 RepID=UPI000F8C8034)

HSP 1 Score: 156 bits (395), Expect = 2.490e-47
Identity = 81/105 (77.14%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:    1 MTDETVTRADLSEAVYQEVGLSRNESADLVESVLSEIADTLTSGETVKISSFGSFSVRQKGQRVGRNPKTGEEVPILPRKVLVFRASNVLKNRINGEAGGEEDAD 315
            M  +TVTRADL EAVYQ+VGLSR ESA LVE+VLSEIAD L SGETVK+SSFGSF VR+KGQRVGRNPKTGEEVPI PR+V+VF+ S++LKNRING  GGE D D
Sbjct:    1 MAGKTVTRADLCEAVYQQVGLSRTESAQLVEAVLSEIADCLASGETVKLSSFGSFVVREKGQRVGRNPKTGEEVPIAPRRVMVFKPSSILKNRINGRTGGEGDDD 105
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BLAST of mRNA_L-digitata_M_contig100438.2.1 vs. uniprot
Match: A0A1Y6C9C9_9HYPH (Integration host factor subunit alpha n=1 Tax=Tistlia consotensis USBA 355 TaxID=560819 RepID=A0A1Y6C9C9_9HYPH)

HSP 1 Score: 155 bits (393), Expect = 3.930e-47
Identity = 79/97 (81.44%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    1 MTDETVTRADLSEAVYQEVGLSRNESADLVESVLSEIADTLTSGETVKISSFGSFSVRQKGQRVGRNPKTGEEVPILPRKVLVFRASNVLKNRINGE 291
            M+ +T+TRADLSEAVYQEVGLSRNESA+LVE+VL E+AD L  GE VKISSFG+FSVR+KGQR+GRNPKTGEEVPILPR+VLVFRAS+VLK RINGE
Sbjct:    1 MSGQTLTRADLSEAVYQEVGLSRNESAELVEAVLDEMADALVKGEMVKISSFGTFSVREKGQRIGRNPKTGEEVPILPRRVLVFRASHVLKKRINGE 97
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100438.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FNB3_9PROT1.030e-5491.09Integration host factor subunit alpha n=1 Tax=Rhod... [more]
A0A2S6Q6X5_9PROT1.030e-5188.12Integration host factor subunit alpha n=1 Tax=Alph... [more]
A0A2D8PPP6_9PROT3.640e-5191.58Integration host factor subunit alpha (Fragment) n... [more]
A0A520NNV8_9PROT4.200e-5175.00Integration host factor subunit alpha n=2 Tax=Rhod... [more]
A0A369THD8_9PROT4.320e-4887.37Integration host factor subunit alpha n=1 Tax=Ferr... [more]
A0A437QYQ6_9PROT1.060e-4784.21Integration host factor subunit alpha n=1 Tax=Hwan... [more]
K2JQY4_9PROT1.160e-4780.20Integration host factor subunit alpha n=4 Tax=Ocea... [more]
A0A6N7F479_9PROT1.490e-4785.42Integration host factor subunit alpha n=1 Tax=Alph... [more]
UPI000F8C80342.490e-4777.14integration host factor subunit alpha n=1 Tax=Aqua... [more]
A0A1Y6C9C9_9HYPH3.930e-4781.44Integration host factor subunit alpha n=1 Tax=Tist... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100438contigL-digitata_M_contig100438:562..933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1207063.P24_04949
Preferred namehimA
PFAMsBac_DNA_binding
Model size372
Max annot lvl204441|Rhodospirillales
KEGG koko:K04764
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.91e-48
EggNOG OGsCOG0776@1|root,COG0776@2|Bacteria,1RH5Z@1224|Proteobacteria,2UCDG@28211|Alphaproteobacteria,2JSQ2@204441|Rhodospirillales
DescriptionThis protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
Cds size372
COG categoryK
BRITEko00000,ko03032,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406607.2787683-CDS-L-digitata_M_contig100438:561..9331682406607.2787683-CDS-L-digitata_M_contig100438:561..933Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100438 562..933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100438.2.1prot_L-digitata_M_contig100438.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100438 562..933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100438.2.1

>prot_L-digitata_M_contig100438.2.1 ID=prot_L-digitata_M_contig100438.2.1|Name=mRNA_L-digitata_M_contig100438.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=124bp
MTDETVTRADLSEAVYQEVGLSRNESADLVESVLSEIADTLTSGETVKIS
SFGSFSVRQKGQRVGRNPKTGEEVPILPRKVLVFRASNVLKNRINGEAGG
EEDADGGFSTTDEAGAAHQQPDTP
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mRNA from alignment at L-digitata_M_contig100438:562..933+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100438.2.1 ID=mRNA_L-digitata_M_contig100438.2.1|Name=mRNA_L-digitata_M_contig100438.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=372bp|location=Sequence derived from alignment at L-digitata_M_contig100438:562..933+ (Laminaria digitata LdigPH10_18mv male)
ATGACCGATGAAACGGTCACAAGAGCAGACCTAAGCGAAGCCGTATATCA
GGAAGTCGGCTTGTCGCGGAACGAGTCTGCCGATCTCGTCGAATCCGTGC
TTTCGGAAATTGCGGACACGCTGACCAGTGGTGAAACAGTCAAAATATCG
TCATTCGGAAGCTTTTCCGTTCGTCAGAAAGGCCAGCGGGTCGGGCGTAA
TCCGAAAACCGGCGAAGAAGTACCCATTCTGCCGCGGAAAGTACTGGTTT
TTCGCGCGTCGAACGTGCTCAAGAACCGTATCAACGGAGAGGCCGGCGGT
GAAGAAGATGCCGATGGTGGATTCTCTACGACGGATGAGGCCGGTGCCGC
CCATCAGCAACCGGACACGCCA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100438:562..933+

>mRNA_L-digitata_M_contig100438.2.1 ID=mRNA_L-digitata_M_contig100438.2.1|Name=mRNA_L-digitata_M_contig100438.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=372bp|location=Sequence derived from alignment at L-digitata_M_contig100438:562..933+ (Laminaria digitata LdigPH10_18mv male)
ATGACCGATGAAACGGTCACAAGAGCAGACCTAAGCGAAGCCGTATATCA
GGAAGTCGGCTTGTCGCGGAACGAGTCTGCCGATCTCGTCGAATCCGTGC
TTTCGGAAATTGCGGACACGCTGACCAGTGGTGAAACAGTCAAAATATCG
TCATTCGGAAGCTTTTCCGTTCGTCAGAAAGGCCAGCGGGTCGGGCGTAA
TCCGAAAACCGGCGAAGAAGTACCCATTCTGCCGCGGAAAGTACTGGTTT
TTCGCGCGTCGAACGTGCTCAAGAACCGTATCAACGGAGAGGCCGGCGGT
GAAGAAGATGCCGATGGTGGATTCTCTACGACGGATGAGGCCGGTGCCGC
CCATCAGCAACCGGACACGCCA
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