mRNA_L-digitata_M_contig10037.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10037.3.1
Unique NamemRNA_L-digitata_M_contig10037.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10037.3.1 vs. uniprot
Match: D7FJS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS8_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.570e-52
Identity = 85/137 (62.04%), Postives = 106/137 (77.37%), Query Frame = 1 
Query:   25 VGEGERGGGD----PLPKLFELSDELG-GQGASGLRWSQLAVYDDQDLVPQCCFLLVPPGEQNFLWVGKAFAQSHSSLGNLSLTQFQALAREVATKDARRESGRVIPAASDVETAVLLVGDGNEPPEWWSSFERGYA 420
            +G G RGGG      +P+LFELSDELG G GASG+RWSQL+++DDQDL+PQCCFLLV PG+ +FLW+G+AFA     + + SL + Q LAR++A KDARR S R +P  SDVETAV++ GDGNEPPEWWS+FE GY 
Sbjct:   14 LGVGVRGGGRGRDASVPRLFELSDELGLGHGASGMRWSQLSIFDDQDLLPQCCFLLVTPGKPSFLWIGEAFAAGLVQVVS-SLEELQELARDIAVKDARRLSDRTLPLPSDVETAVIVPGDGNEPPEWWSAFESGYT 149
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BLAST of mRNA_L-digitata_M_contig10037.3.1 vs. uniprot
Match: A0A6H5L2L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L8_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 3.070e-47
Identity = 84/134 (62.69%), Postives = 104/134 (77.61%), Query Frame = 1 
Query:   22 GVGEGERGGGDPLPKLFELSDELG-GQGASGLRWSQLAVYDDQDLVPQCCFLLVPPGEQNFLWVGKAFAQSHSSLGNLSLTQFQALAREVATKDARRESGRVIPAASDVETAVLLVGDGNEPPEWWSSFERGYA 420
            GV  G RG    +P+LFELSDELG G GASG+RWSQL+++DDQDL+PQCCFLLV PG+ +FLW+G+AFA     + + SL + Q LAR++A KDARR S R +P  SDVETAV++ GDGNEPPEWWS+FE GY 
Sbjct:  853 GVRGGRRGRDASVPRLFELSDELGLGHGASGMRWSQLSIFDDQDLLPQCCFLLVTPGKPSFLWIGEAFAAGLVQVVS-SLEELQELARDIAVKDARRLSDRTLPLPSDVETAVIIPGDGNEPPEWWSAFESGYT 985
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BLAST of mRNA_L-digitata_M_contig10037.3.1 vs. uniprot
Match: A0A835YKW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKW6_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.230e-5
Identity = 36/103 (34.95%), Postives = 51/103 (49.51%), Query Frame = 1 
Query:  118 WSQLAVYDDQDLVPQCCFLLVPPGEQN---FLWVGKAFAQSHSSLGNLSLTQFQALAREVATKDARRESGRVIPAASDVETAVLLVGDGNEPPEWWSSFERGY 417
            W +L+VYDDQDL P  C+LL+         F W+G  FA +H  +  L   +F      +A   A  E     PA  D   AV+ + +  E  E+W++FE GY
Sbjct:  663 WRRLSVYDDQDLAPDACYLLLCQCSARAAAFAWIGHEFAAAH--MRALPPREF------LAAVSACSEQW---PAGVDAGAAVVEMPEA-ESDEFWAAFEAGY 753
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10037.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJS8_ECTSI1.570e-5262.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2L8_9PHAE3.070e-4762.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YKW6_9STRA2.230e-534.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10037contigL-digitata_M_contig10037:2651..7807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size423
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_010310.1
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406606.4852653-CDS-L-digitata_M_contig10037:2650..28331682406606.4852653-CDS-L-digitata_M_contig10037:2650..2833Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10037 2651..2833 -
1682406606.4986527-CDS-L-digitata_M_contig10037:3892..39851682406606.4986527-CDS-L-digitata_M_contig10037:3892..3985Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10037 3893..3985 -
1682406606.506192-CDS-L-digitata_M_contig10037:7660..78071682406606.506192-CDS-L-digitata_M_contig10037:7660..7807Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10037 7661..7807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10037.3.1prot_L-digitata_M_contig10037.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10037 2651..7807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10037.3.1

>prot_L-digitata_M_contig10037.3.1 ID=prot_L-digitata_M_contig10037.3.1|Name=mRNA_L-digitata_M_contig10037.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=141bp
RAGGAGGGVGEGERGGGDPLPKLFELSDELGGQGASGLRWSQLAVYDDQD
LVPQCCFLLVPPGEQNFLWVGKAFAQSHSSLGNLSLTQFQALAREVATKD
ARRESGRVIPAASDVETAVLLVGDGNEPPEWWSSFERGYA*
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mRNA from alignment at L-digitata_M_contig10037:2651..7807-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10037.3.1 ID=mRNA_L-digitata_M_contig10037.3.1|Name=mRNA_L-digitata_M_contig10037.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=5157bp|location=Sequence derived from alignment at L-digitata_M_contig10037:2651..7807- (Laminaria digitata LdigPH10_18mv male)
CGCGCGGGGGGGGCGGGGGGCGGCGTGGGGGAGGGGGAGAGGGGCGGGGG
TGATCCGCTCCCGAAGCTGTTCGAGCTTTCGGATGAGCTGGGGGGGCAGG
GTGCTAGTGGGTTGCGCTGGAGCCAGCTCGCCGTGTATGATGACCAGGTG
CGTAAGACAAATTGGTTGGGGGGGTGGGTATTCATTGTCGTGCATGGCCG
TAGTCATACAACCATTTTGGGGGGTGTACTCGTTGTCATGGATGGCCGTA
GTCGGATGACCATTTTGGGGGGTGTACTCATTGTCGTGCATGGCCGTAGC
CGTATGACCGTTGTGGGGGGTGTACTCATTTGTCAGGCATGGCCGTGGTT
GTATGACCATATATACGTAAACCCTACCAAAAAAAAAATGGGGGGTGGCG
TTGTTTAGAGGCTAGAGAGGTCGCTGATGGCCTCGCTAACGGCTACCCAA
CGGCTCTACCAGGCAGTGCGGTACAGTAATACGGGGGACCGTAGTAAATA
GGACCAAATATGCTTAGCAAAAATAGTGTATTATATAGGTTTTTGTGTGT
GTCGTGGGTCCTATTGACACTGGTCCCCCGTTATATAGTACAGGGCACTA
AGCAAGACAGGCTAAGGTTAAGATTTACAAGAGAGTAGGAAATTCGGGAG
CCGTTAACGGCTACTCGCAGTGTGGCACAGTAGCAGTACAGGACGCTCAC
AAAGACAAGGAGCACTAAGAAAGTCAGGCTAAGATTCTACAGTAAAATGT
GGGTGGCGGGCTTGCCCCGCCAACAACTACTGCGGTACAGTACAGGACAC
AACCTAAGAATGCGAGCACTATACATAAGAAAGTCAAGCTCAGATTTACA
GGAAAATATGAAATTCGAGAGCCGTTCACGGCTAGTGCGGTACATTACAG
GACACACGCTACATAAGAATATAAACACTTTCAGAAAGCCAAGCTGAGAT
TCACAGGAAAAAAACGAGTTCGGGAGCCATTAACGGCTAGTGCGGTACAG
TAATAGGTAATAGAGGCCACATTCTTAAGAATACGAGCACTGCTGTAGTA
AGAAAGGCAGGCTGATATAATCAGGAAAAAATAAGAAATTCGCGAGCGGG
TATGCTGAAGATTGTGTAGAAAGCACAGTTTCCCAAAATATGAAACCCAG
CCTGAGCCAGCAGTGCTGTTTCCTAGTACCTGGTATATAGTAATCCTGTC
ACGGTGTAATAGCTAAGGACTCAATATCCTTCATGAGGAAACATGTAAAA
CACGTAGTACGCGCGACCGAGGTATCCCGCGCAGCTTGCAAAGATGACTT
GCAAAGATGACTTGCAAATATGAGGTTCGACGAAATCCTCGATCTCACAG
CTGACTGTTATTTTATTTTATAAATAGCGTCTTTGACGGAGAGCATTGTC
TGACGTGGCTGTCATGTTCATGTAGAGTCTTCTCGCGCGGGGCTAGATGA
TGCCGCTGCTGGGCCGTGCCTTGCGTGGTGCAGTGGAGTGGGCTTGTGTA
CAATATGCGGCGCCACTTACTTAACCCCTTTAGGACCGCAGTCCCGTTTA
GACCTTTTGGGGACAATTTTACTTGGAATTAGAGTCAAAGTGTCCCCAAA
ACGGGAGCGCGGTCCTAAAGGGGTTTAAGAATCTCGTATTTAAGGCCAGG
TTCGAATTCTTATGTAAGTAAAGGCAGGGTGTGGGTGTGTCCTACACAAA
TTTCAGTATGAAAATGGCCGCATTCTTATCTTAGTCCAAAAATCGAGCCC
GAAATTCTTAACTTCCATGTCATATTCTTAAGTGCTGTCGCGTGCTGACT
GTATTGGTGCTTGGTGCGTCGTCGTCGGGGGTATCATACAGGGTTAGGGT
TGTGCTTGGATGTACAGCAGTAGTAGTAGTGGTCCTTCCCTCTATAGTGC
CCGTATACGCAAGCCAACATTACCGGCACTATACCGGCAACCGGCACTAC
TACGCACACTGCCACACTGATTAATCCCATCCGTTCCAAGCGATTTCACA
GGCACTATATGCGGCAACCGGCACTATAGAGGGACCACTACTGTACTCTC
ATCGATGTCTCCAGTGCATTTGTGTGTCGAGCGCGTTAGGTTGTGGTTTT
GCGATGGGTTACCGTATGATATCACACGGAAGAAAACACACCCCGGTGAT
AAAACAATTTGACCTTTCAAAAAATTATCACCCGGTGGGCTGTTGGGGGG
GGGGGGTGCTATCTAACGTATCCCGGATGATAGGCACACCATGGTACACC
ATGGACGGGTGGTAAAGTGATGGTCGAAAAACGAAACACAATATATAGGG
CAATAACCAAAAACTGGTACACCCGGTCCGTTTCGAGTCAAAAACGGGCA
CAGCCTGGAATCATGTCAAAAACACCCCCAACGAGCCACGCGATTGGCCA
AGAACAAATCGTACCCGTTTGTGAGAGATAATGACCCGGGTATACCTGTA
AATGCCTATTATGCTTGGCGTTCAACCGTTATTGGTTATTTTTTACTTGC
CTACAGCGGTGTACCTTGTGTTTCACTGCGGCCGCTCTATGGTTCAGTCG
ATTTTTCCAAGCTCTTTCACCTTTGGACACAGCAGTGTCACTTTATTTAC
TCTGTTGCCCAGGTGCACGTACGTCCACACATTCATTCGTACAAGCGTAT
AGCCCATACGAGGTACGTATAACGTATGCGTACGACTGCTGCTGTATACC
ACGAGCAATACTGCTGTCTCCTCGTATCATACTTCGTACCAGTATTAAAC
AGAGGTACTGGTGGCGCTGAGACCAAGCAAAAAGCACACGCTTGCCACCA
GAATTCTGCTTCTAAACACCCCTCCCTGCCTACCACTTGGCACCCTGATC
CCCCCGAGATTTGATCCCACCCGGGCCTGAGCCCTCCCAACTTAACGTGC
AAACGTCGAAGTATATAACTACTGTAGCCGCCGGCAAGTGTACCTGTTGG
TCGTTATCCTTCAGAAACGGGTGTGATGTGCTTTTGGCGAATCAATCGCG
TGATGGCTCGTGGGGGGTGTTTTTGACTTGATTCCAGTATGTACCCGTTT
TTGACTCCAATTGGACCGGGTGTACCCGTTTTTGGTTATTGCCCAAATAC
ATACCAGGTATGTATCACGGGGTGTGCTCATATGGGGGGGGTGTGCTTTC
TTCCGTGTTGTATATACGGTACCAGGTAGTTGCTGAGAAGAGATTTTATA
GCCGGGAGGGAAGGAAGTTTAATTTCACTATTGTGCAGGCGGACGCGCTG
TGGAGTGAGTGAACTCTCCCCGCCGTCCCCCGCTTGGGCTGTGGACGATC
CGCGTGTTCTCGTTGTTTCCGCCCGCGCGGTTGCTTCACCTCCACGATTA
CGGCGACGCGCCGCCTCTGCAAACATCGCGGTTCCCGGCTTTTGTTTTGT
CTCTACGTATACGGTAGACCGGTTTCGTCTCCACGTGCATACGGTACACC
TGTTTCGTCTCTACGTGCAGTAGACCTGTTTCGTCTTTACGTGCAGTAGA
CCTGTTTCGTCTCGGCGTGCGGCGTGCGTGCGGTAGACCTGGTTCGTCTC
TACGTATATATGTAAGGTACACCCGTTTCGTCTTTACGTACATACCCTGG
TACGGTAAAAACTGGTTTCGTCTCTACGTATTATACGGTAGACCTGTTTC
GTGTATGTATATACCTGTCGAGCTGCCTTCCTCCTTCATCATGTGGTTGT
TGACATCCTCCCATCTTGTTTTCTTTCTCTTTTTTTTTCTTCTTTTTTTT
GTTCCGTCCCGTCGGCCATCGTGGTCTGTTCGACTTCTGGCGCCTCTGGT
TGTCCGTCCGCCTGGCTCGCAGGACTTGGTGCCGCAGTGCTGCTTCCTCC
TGGTGCCGCCTGGCGAGCAAAATTTCCTCTGGGTCGGGAAGGCTTTCGCC
CAGTCTCACTCGTCGGTGAGAGCATATACCACGGACGCAATGACGCAATG
ACGCAAAGTTGTAAGATGGATAACCTTACCGTCATAAGATGTGCAGGATC
TGTTTGGTACATATCCAGCACGGGAAACATGTGCTAGATAATGCAGATTA
ACACGGACGCAATGACGCAAAGTTGTACAATGGATAACCTTACTTACACA
CGTCGGACAGATCATGAACCTAACCCGCCGTTATAAGATGTTGTGCAGGA
TCTGTATAGTACAGATTCAGCACAGGAAACGTGTGCAAAATAATGCAGAT
TACACGGCTTCCACCTGGCAAACATGAGCTAAATCGTACAGTTCAGGAAT
CTATGTGCCCTGAGACGCCTCTAAGCCGCAAGCAAGTGCGCTCCCGTTTT
GGTAGCTGTCCACACCTCGGACAGACCATCGATTTCTACTTCGTGATCTA
GATCCTTCAGGGCAGATATTTTCCCGATCTTGTATGATCTATAGCTCATG
TTGCCGGGTTGCAGCGGTGTAGTCTGCATGATCTAGGACATACTTTGCTG
GGTTGGATCTGTACTGTACAGATTATGCACAACAGCTCATAACGGCAGGT
TAGGATCTACAATGGTTAATCTAGATGATCTAGACCATGATCTGTCCGAC
GTGTGTAACTGTCGCGTCGTCCGTTTTGTAACTGTCGCGTGCACAGTCTT
GTCAGATATACGCTGCCCGAAAAATTCACAGCGCGGTGTCTCGATCAATG
CGCGCACCCCCGCCCGCTTGCTGCTGTCTGTGTCCATCCCCTGCCATTCG
CGTACCGTAAAAATGCCTCCTCCAACGTACACCGCCCGCCCACTGCTTTG
CCCCACCCCATCCCCTGCCGCGCGCACCGTAATAATAATCCCTCCTCCTT
AAAAGCTTGGAAACCTTAGCGCACCCCCGCCCGCTTACTGCTGTCTGTGT
CCACCCCCTGCCATTCGCGTACCGTAAAAATGCCTCCTCCAGCGTACACC
GCCCGCCCACTGCTTTGCCCCACCCCATCCCCTGCCGCGTGCACCGTAAT
AATAATGCCTCCTCCTTTAAAAAGCTTGGAAACCTTAGCCTCACGCAGTT
TCAGGCGCTGGCGAGGGAAGTCGCGACTAAAGACGCGAGGAGGGAATCGG
GCCGAGTTATCCCGGCAGCATCAGACGTGGAGACGGCTGTACTCCTAGTA
GGCGATGGCAACGAACCGCCCGAGTGGTGGTCGTCCTTCGAGCGAGGGTA
TGCTTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10037:2651..7807-

>mRNA_L-digitata_M_contig10037.3.1 ID=mRNA_L-digitata_M_contig10037.3.1|Name=mRNA_L-digitata_M_contig10037.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=423bp|location=Sequence derived from alignment at L-digitata_M_contig10037:2651..7807- (Laminaria digitata LdigPH10_18mv male)
CGCGCGGGGGGGGCGGGGGGCGGCGTGGGGGAGGGGGAGAGGGGCGGGGG
TGATCCGCTCCCGAAGCTGTTCGAGCTTTCGGATGAGCTGGGGGGGCAGG
GTGCTAGTGGGTTGCGCTGGAGCCAGCTCGCCGTGTATGATGACCAGGAC
TTGGTGCCGCAGTGCTGCTTCCTCCTGGTGCCGCCTGGCGAGCAAAATTT
CCTCTGGGTCGGGAAGGCTTTCGCCCAGTCTCACTCGTCGCTTGGAAACC
TTAGCCTCACGCAGTTTCAGGCGCTGGCGAGGGAAGTCGCGACTAAAGAC
GCGAGGAGGGAATCGGGCCGAGTTATCCCGGCAGCATCAGACGTGGAGAC
GGCTGTACTCCTAGTAGGCGATGGCAACGAACCGCCCGAGTGGTGGTCGT
CCTTCGAGCGAGGGTATGCTTAG
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