mRNA_L-digitata_M_contig100355.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100355.1.1 vs. uniprot
Match: A0A3D3VCW1_9PROT (EamA family transporter n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D3VCW1_9PROT) HSP 1 Score: 376 bits (966), Expect = 1.460e-128 Identity = 191/287 (66.55%), Postives = 231/287 (80.49%), Query Frame = 1
Query: 1 LLFVLGGFWGCTFFFNEIAILELPPLSIILFRVGLASIILWIVVFASGITIPRSRDVWVALGIMAAINSAIPFFLIAWGQIHITGGLASILIATSPLFAVVGAHYWTRDEGLTPGKIIGILAGLIGVVFLLGPELLGDIGSDLIGQLSVLGAAICYAGSAIYGRRFATFGVPPLFVATGQMTMATVLLVPFTLIVDQPWTLANPSLPVWGAIISLAVVSTTFAYLIYFRILANAGAINILLVNFLVPVSALLLGIFVLGETLTIEQMIGLACIVVGLVTIDGRLLSR 861
LLFVLG WG TFFFN IAI ELPPL +IL RV LA++ILW V ASGI +P R W+AL IMAA+NSA+PFFLIAWGQIHI GLASI+IAT+PLFAVV AH+ T DE ++PGK+ G+L+GL+GVV L+GP+ L D+G DL+GQLSVLGAA+CYA SAIYGR FA +PP+ VATGQMTMATV+L+P TL+ D+PW SL WGA+ LAV+ST+ AYLI+FRILA AGA+NILLVNF+VPVSA+LLG+F+LGE LT+EQ+ G+ I +GL IDGRL R
Sbjct: 8 LLFVLGALWGGTFFFNAIAIPELPPLVVILCRVALATVILWFFVLASGIELPSDRSDWLALLIMAALNSALPFFLIAWGQIHIASGLASIMIATTPLFAVVAAHFMTEDERMSPGKVAGVLSGLVGVVVLIGPQFLEDLGKDLLGQLSVLGAAVCYALSAIYGRTFAKRDIPPMMVATGQMTMATVILLPITLLFDRPWDYLGASLEAWGAVAGLAVLSTSIAYLIFFRILARAGAVNILLVNFIVPVSAILLGVFILGELLTLEQLAGMVFIALGLALIDGRLFRR 294
BLAST of mRNA_L-digitata_M_contig100355.1.1 vs. uniprot
Match: A0A2E7PH87_9PROT (EamA family transporter n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PH87_9PROT) HSP 1 Score: 374 bits (961), Expect = 1.110e-127 Identity = 189/287 (65.85%), Postives = 232/287 (80.84%), Query Frame = 1
Query: 1 LLFVLGGFWGCTFFFNEIAILELPPLSIILFRVGLASIILWIVVFASGITIPRSRDVWVALGIMAAINSAIPFFLIAWGQIHITGGLASILIATSPLFAVVGAHYWTRDEGLTPGKIIGILAGLIGVVFLLGPELLGDIGSDLIGQLSVLGAAICYAGSAIYGRRFATFGVPPLFVATGQMTMATVLLVPFTLIVDQPWTLANPSLPVWGAIISLAVVSTTFAYLIYFRILANAGAINILLVNFLVPVSALLLGIFVLGETLTIEQMIGLACIVVGLVTIDGRLLSR 861
LLFVLG WG TFFFN IAI ELPPL +IL RV LA++ILW V A GI +PR R W+AL IMAA+NSA+PFFLIAWGQIHI GLASI+IA +PLFAVV AH+ T DE ++PGK+ G+LAGL+GVV L+GP+ L ++G DL+GQLSVLGAA+CYA SAIYGR F+ + P+ VATGQMTMAT++L+P TL+VD+PW SL WGA++ LAV+ST+ AYLI+FRILA AGA+NILLVNF+VP+SA+LLG+FVLGE LT+EQ+IG+ I +GL IDGRL R
Sbjct: 16 LLFVLGALWGGTFFFNAIAIPELPPLVVILCRVALATVILWFFVLAGGIKVPRGRSSWLALLIMAALNSALPFFLIAWGQIHIASGLASIMIAMTPLFAVVAAHFMTEDEHMSPGKVAGVLAGLVGVVVLIGPQFLEELGKDLLGQLSVLGAAVCYAVSAIYGRTFSRRAMAPMMVATGQMTMATLILLPITLLVDRPWEYLGASLEAWGAVVGLAVLSTSVAYLIFFRILARAGAVNILLVNFIVPISAILLGVFVLGELLTLEQLIGMVFIALGLALIDGRLFLR 302
BLAST of mRNA_L-digitata_M_contig100355.1.1 vs. uniprot
Match: A0A2E8XU22_9PROT (EamA family transporter n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XU22_9PROT) HSP 1 Score: 348 bits (893), Expect = 2.300e-117 Identity = 178/287 (62.02%), Postives = 222/287 (77.35%), Query Frame = 1
Query: 1 LLFVLGGFWGCTFFFNEIAILELPPLSIILFRVGLASIILWIVVFASGITIPRSRDVWVALGIMAAINSAIPFFLIAWGQIHITGGLASILIATSPLFAVVGAHYWTRDEGLTPGKIIGILAGLIGVVFLLGPELLGDIGSDLIGQLSVLGAAICYAGSAIYGRRFATFGVPPLFVATGQMTMATVLLVPFTLIVDQPWTLANPSLPVWGAIISLAVVSTTFAYLIYFRILANAGAINILLVNFLVPVSALLLGIFVLGETLTIEQMIGLACIVVGLVTIDGRLLSR 861
LL VLG WG TFFFN +A+ E+PPL +IL RV +ASIILW +V A G+ +PR+ +W L +MAA NSA+PFFLIAWGQ+HI GLA+I+IAT+PL+AVV AH+WT DE +TPGK+ G+L G++GVVFL+GP +LG + +V+GAAI YA SAIYGRRFA V P+ VATGQ++M+TV+L+PF + PW L NPS+ WGA++ LA++ST AYLIYFRILA AGA+NILLVNFLVPVSAL+LGIFVLGE LT EQMIG+A I GL IDGR+ R
Sbjct: 16 LLVVLGTLWGGTFFFNAVALPEVPPLIVILSRVVIASIILWAIVLARGMVVPRNPRIWFDLTVMAASNSAVPFFLIAWGQLHIPSGLAAIMIATTPLYAVVAAHFWTDDEAMTPGKLTGVLLGIVGVVFLIGPGVLGALXXXXXXXXAVIGAAILYALSAIYGRRFAKQEVAPMVVATGQLSMSTVMLLPFAIHFAPPWELTNPSVAAWGALLGLAILSTAVAYLIYFRILATAGAVNILLVNFLVPVSALILGIFVLGEVLTAEQMIGMAFIAAGLALIDGRMFVR 302
BLAST of mRNA_L-digitata_M_contig100355.1.1 vs. uniprot
Match: UPI001D010217 (DMT family transporter n=1 Tax=Kinneretia sp. XES5 TaxID=2877940 RepID=UPI001D010217) HSP 1 Score: 300 bits (768), Expect = 2.500e-98 Identity = 151/289 (52.25%), Postives = 205/289 (70.93%), Query Frame = 1
Query: 1 LLFVLGGFWGCTFFFNEIAILELPPLSIILFRVGLASIILWIVVFASGITIPRSRDVWVALGIMAAINSAIPFFLIAWGQIHITGGLASILIATSPLFAVVGAHYWTRDEGLTPGKIIGILAGLIGVVFLLGPELLGDIGSDLIGQLSVLGAAICYAGSAIYGRRFATFGVPPLFVATGQMTMATVLLVPFTLIVDQPWTLANPSLPVWGAIISLAVVSTTFAYLIYFRILANAGAINILLVNFLVPVSALLLGIFVLGETLTIEQMIGLACIVVGLVTIDGRLLSRFQ 867
LL VL WG +F FN I + ELPP +I+ RVGLA+I LW++V SG +PRSRD W+A M +N+ IPF LI WGQ HI GLASIL AT+PLFAV+ AH T+DE +T ++ G+L G +GV ++GP +L D+G++++ QL+VLGAA Y+ + I+GRRF G+PPL A GQ+T + +L++P L+VD+PWTLA PS W A++ LA+++T AY+I+FRILA AGA N++LV FL+PVSA+LLG VLGE L + G+A I +GL IDGR+L F
Sbjct: 13 LLLVLSLLWGGSFLFNGILVRELPPFTIVTARVGLAAIALWVIVRLSGHAVPRSRDAWLAFFGMGVMNNIIPFSLIVWGQTHIASGLASILNATTPLFAVIVAHVLTQDEKMTGSRLAGVLVGFLGVALMIGPSVLSDLGTNVLAQLAVLGAAFSYSLAGIFGRRFRRMGLPPLLPAAGQVTASALLMLPVALVVDRPWTLAMPSAEAWAALLGLALLATALAYVIFFRILATAGATNLMLVTFLIPVSAILLGALVLGEVLAPKHFAGMALIALGLAAIDGRVLKMFS 301
BLAST of mRNA_L-digitata_M_contig100355.1.1 vs. uniprot
Match: A0A372NI88_9HYPH (DMT family transporter n=4 Tax=Shinella TaxID=323620 RepID=A0A372NI88_9HYPH) HSP 1 Score: 299 bits (766), Expect = 3.980e-98 Identity = 152/288 (52.78%), Postives = 203/288 (70.49%), Query Frame = 1
Query: 1 LLFVLGGFWGCTFFFNEIAILELPPLSIILFRVGLASIILWIVVFASGITIPRSRDVWVALGIMAAINSAIPFFLIAWGQIHITGGLASILIATSPLFAVVGAHYWTRDEGLTPGKIIGILAGLIGVVFLLGPELLGDIGSDLIGQLSVLGAAICYAGSAIYGRRFATFGVPPLFVATGQMTMATVLLVPFTLIVDQPWTLANPSLPVWGAIISLAVVSTTFAYLIYFRILANAGAINILLVNFLVPVSALLLGIFVLGETLTIEQMIGLACIVVGLVTIDGRLLSRF 864
LL L WG +F FN I + ELPPL+I+ RV LA+I LW +V SG +PRSR+VW+A M +N+ IPF LI WGQ HI GLASIL AT+PLFAV+ AH T DE +T G+++G+L G GV ++GP +L D+G++++ QL+VLGAA+ YA + I+GRRF G+PPL A GQ+T + ++++P L+VD+PWTLA PS W A+ LAV++T AY+I+FRILA AGA N++LV FL+PVSA+LLG VLGE L + G+A I VGL IDGR+ F
Sbjct: 8 LLIALSALWGGSFLFNGILVRELPPLTIVAARVALAAIALWTIVRLSGHAVPRSREVWLAFLGMGVLNNVIPFSLIVWGQTHIASGLASILNATTPLFAVIVAHVLTEDEKMTGGRLVGVLVGFAGVALMIGPSVLSDLGTNVLAQLAVLGAAVSYAFAGIWGRRFRRMGLPPLLPAAGQVTASALIMLPVALVVDRPWTLAMPSHEAWLALFGLAVLATALAYVIFFRILATAGATNLMLVTFLIPVSAILLGALVLGEVLAPKHFAGMALIAVGLAAIDGRVFKMF 295
BLAST of mRNA_L-digitata_M_contig100355.1.1 vs. uniprot
Match: UPI001FEF615B (EamA family transporter n=2 Tax=Agrobacterium sp. AGB01 TaxID=2769302 RepID=UPI001FEF615B) HSP 1 Score: 298 bits (763), Expect = 1.290e-97 Identity = 152/292 (52.05%), Postives = 204/292 (69.86%), Query Frame = 1
Query: 1 LLFVLGGFWGCTFFFNEIAILELPPLSIILFRVGLASIILWIVVFASGITIPRSRDVWVALGIMAAINSAIPFFLIAWGQIHITGGLASILIATSPLFAVVGAHYWTRDEGLTPGKIIGILAGLIGVVFLLGPELLGDIGSDLIGQLSVLGAAICYAGSAIYGRRFATFGVPPLFVATGQMTMATVLLVPFTLIVDQPWTLANPSLPVWGAIISLAVVSTTFAYLIYFRILANAGAINILLVNFLVPVSALLLGIFVLGETLTIEQMIGLACIVVGLVTIDGRLLSRFQLTG 876
+L L WG +FFF +A+ ELPPL+I+ RVGLA+I L IV G+ +PR +W A M +N+ IPF LI WGQ HI G+ASIL AT+PLF V+ AH+ T DE L+P K+ G+L G +GV ++GP LG GS+L GQL++LGAA YA + I+GRRF T GV PL ATGQ++ +T++L+P L++DQPWTLA PS WGA++ +A++ST AYL++FRIL+ AGA N+ LV FL+PVSA+LLG LGE L ++ +G+A I GL+ IDGRLL R + G
Sbjct: 15 MLIALSVLWGGSFFFIGVAVKELPPLTIVTLRVGLAAIALLIVCRVMGLKLPREGRIWRAFFAMGILNNIIPFCLIVWGQTHIASGVASILNATTPLFTVIVAHFLTVDEKLSPNKLTGVLIGFVGVATMIGPSALGGSGSNLWGQLAILGAATSYAFAGIFGRRFKTMGVAPLMTATGQISSSTLMLIPVALLIDQPWTLAMPSAATWGALLGIALLSTALAYLLFFRILSTAGATNLALVTFLIPVSAILLGSLFLGEQLEMKHFVGMAMIAAGLIAIDGRLLRRLKAAG 306
BLAST of mRNA_L-digitata_M_contig100355.1.1 vs. uniprot
Match: A0A2E3XBU6_9PROT (EamA family transporter n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E3XBU6_9PROT) HSP 1 Score: 296 bits (759), Expect = 4.290e-97 Identity = 151/290 (52.07%), Postives = 208/290 (71.72%), Query Frame = 1
Query: 1 LLFVLGGFWGCTFFFNEIAILELPPLSIILFRVGLASIILWIVVFASGITIPRSRDVWVALGIMAAINSAIPFFLIAWGQIHITGGLASILIATSPLFAVVGAHYWTRDEGLTPGKIIGILAGLIGVVFLLGPELLGDIGSDLIGQLSVLGAAICYAGSAIYGRRFATFGVPPLFVATGQMTMATVLLVPFTLIVDQPWTLANPSLPVWGAIISLAVVSTTFAYLIYFRILANAGAINILLVNFLVPVSALLLGIFVLGETLTIEQMIGLACIVVGLVTIDGRLLSRFQL 870
LL +L FWG +F F IA+ + P +I RV +AS+ILW + S I IP++ +W + IM INSAIPF LIAWGQ +I GLASILIAT+PL V+GAH++T DE +T ++IGIL G +GV+ LLGP+LLG IG +L GQL+++ AAI YA S+IYGRR++ +PPL +A GQ+T + ++L P +++DQPW + S W AIISL V ST AYLIYFRILA AGA N++LVNFLVP++A+ LGI VLGE+++++ ++G+ I +GL IDGRL + ++
Sbjct: 8 LLIILSIFWGGSFLFVGIAVEDFQPFTIAFLRVLIASLILWXAIIISSIKIPKTASIWCSFFIMGTINSAIPFSLIAWGQSNIPSGLASILIATTPLITVIGAHFYTTDEKITANRLIGILMGFVGVIVLLGPDLLGQIGRNLFGQLAIISAAILYALSSIYGRRYSKQKIPPLVIAAGQVTTSAIILFPTVILIDQPWLHSPASNXSWAAIISLGVFSTAIAYLIYFRILATAGATNLMLVNFLVPITAIFLGIMVLGESISLQNILGMFFIGIGLTLIDGRLNKKIKI 297
BLAST of mRNA_L-digitata_M_contig100355.1.1 vs. uniprot
Match: A0A1A9FWW8_SHIS7 (ABC transporter permease n=8 Tax=Shinella TaxID=323620 RepID=A0A1A9FWW8_SHIS7) HSP 1 Score: 296 bits (757), Expect = 1.320e-96 Identity = 151/285 (52.98%), Postives = 203/285 (71.23%), Query Frame = 1
Query: 1 LLFVLGGFWGCTFFFNEIAILELPPLSIILFRVGLASIILWIVVFASGITIPRSRDVWVALGIMAAINSAIPFFLIAWGQIHITGGLASILIATSPLFAVVGAHYWTRDEGLTPGKIIGILAGLIGVVFLLGPELLGDIGSDLIGQLSVLGAAICYAGSAIYGRRFATFGVPPLFVATGQMTMATVLLVPFTLIVDQPWTLANPSLPVWGAIISLAVVSTTFAYLIYFRILANAGAINILLVNFLVPVSALLLGIFVLGETLTIEQMIGLACIVVGLVTIDGRLL 855
LL L WG +F FN I + ELP L+I+ RV LA++ LW VV +G +PRSR+VW+A M +N+ IPF LI WGQ HI GLASIL AT+PLFAV+ AH T+DE +T G+++G+L G +GV ++GP +L D+G++L+ QL+VLG A+ Y+ + I+GRRF G+PPL A GQ+T + VL++P L+VD+PWTLA PS+ W A+ LA ++T AY+I+FRILA AGA N++LV FL+PVSA+LLG VLGE L + G+A I VGL IDGRLL
Sbjct: 13 LLIALSLLWGGSFLFNGILVRELPTLTIVAARVALAALALWTVVRLAGHAVPRSREVWLAFLGMGVLNNIIPFSLIVWGQTHIASGLASILNATTPLFAVIAAHLLTKDEKMTGGRLVGVLVGFLGVALMIGPSVLSDLGANLLAQLAVLGGAVSYSIAGIFGRRFHRMGLPPLLPAAGQVTASAVLMLPVALVVDRPWTLAMPSVETWMALFGLAFLATALAYVIFFRILATAGATNLMLVTFLIPVSAILLGALVLGEVLAPKHFAGMALIAVGLAAIDGRLL 297
BLAST of mRNA_L-digitata_M_contig100355.1.1 vs. uniprot
Match: A0A086MCG2_9HYPH (ABC transporter permease n=1 Tax=Microvirga sp. BSC39 TaxID=1549810 RepID=A0A086MCG2_9HYPH) HSP 1 Score: 295 bits (754), Expect = 4.430e-96 Identity = 147/289 (50.87%), Postives = 209/289 (72.32%), Query Frame = 1
Query: 1 LLFVLGGFWGCTFFFNEIAILELPPLSIILFRVGLASIILWIVVFASGITIPRSRDVWVALGIMAAINSAIPFFLIAWGQIHITGGLASILIATSPLFAVVGAHYWTRDEGLTPGKIIGILAGLIGVVFLLGPELLGDIGSDLIGQLSVLGAAICYAGSAIYGRRFATFGVPPLFVATGQMTMATVLLVPFTLIVDQPWTLANPSLPVWGAIISLAVVSTTFAYLIYFRILANAGAINILLVNFLVPVSALLLGIFVLGETLTIEQMIGLACIVVGLVTIDGRLLSRFQ 867
+L L WG +FFF +A+ ELPP +I++ RVGLA++IL IV+ G+ IP + VW+A M +N+AIPF LI WGQ HI GLASIL AT+PL V+ AH+ T+DE +T +++G+L GL+GVV ++GPE+L +G++++ QL+VLGAA+ YA + +YGRRF GV P+ ATGQ+T +T++L+P ++ +QPW L PSLP WGA+I +A +ST AY++YFRILA AGA N+LLV FL+P+SA++LG VLGE L + +G+A I +GL IDGRL+ +
Sbjct: 15 MLVTLSVLWGGSFFFTGVAVKELPPFTIVVLRVGLAALILNIVIRTIGLRIPGDKRVWIAFFGMGLLNNAIPFPLIVWGQSHIASGLASILNATTPLSTVIVAHFLTQDEKMTGNRLVGVLIGLVGVVVMIGPEVLTGLGTNVLAQLAVLGAALSYAFAGVYGRRFKQMGVAPMVTATGQVTASTIILIPVAVLFEQPWQLPMPSLPAWGALIGIAALSTALAYILYFRILATAGATNLLLVTFLIPISAIILGSAVLGERLDPKHFLGMALIGLGLAAIDGRLIKLLR 303
BLAST of mRNA_L-digitata_M_contig100355.1.1 vs. uniprot
Match: A0A3S2V977_9HYPH (DMT family transporter n=1 Tax=Methylobacterium oryzihabitans TaxID=2499852 RepID=A0A3S2V977_9HYPH) HSP 1 Score: 293 bits (749), Expect = 1.830e-95 Identity = 153/289 (52.94%), Postives = 205/289 (70.93%), Query Frame = 1
Query: 1 LLFVLGGFWGCTFFFNEIAILELPPLSIILFRVGLASIILWIVVFASGITIPRSRDVWVALGIMAAINSAIPFFLIAWGQIHITGGLASILIATSPLFAVVGAHYWTRDEGLTPGKIIGILAGLIGVVFLLGPELLGDIGSDLIGQLSVLGAAICYAGSAIYGRRFATFGVPPLFVATGQMTMATVLLVPFTLIVDQPWTLANPSLPVWGAIISLAVVSTTFAYLIYFRILANAGAINILLVNFLVPVSALLLGIFVLGETLTIEQMIGLACIVVGLVTIDGRLLSRFQ 867
+L VL WG +FFF+ +A+ LPP+++++ RVGLA+++L +VV ASG +PR R VWVA M +N+A+PF LI WGQ HI GLA+IL AT+PL VV AH TRDE +T ++ G+L GL GVV ++GP +L +G+ L QL+VL A + YA + ++GRRF GV PL A GQ+T +T++LVP L+VD+PWTL P LPVWGA+ LA++ST AY++YFRILA AGA N+LLV FL+PVSA+LLG LGE L +G+A I GL IDGRLL+R +
Sbjct: 13 MLLVLSVLWGGSFFFSGVALAALPPVTLVVLRVGLAALLLNLVVVASGARMPRDRRVWVAFLGMGLLNNAVPFCLIVWGQTHIASGLAAILNATTPLSGVVVAHCLTRDERMTGNRLAGVLVGLAGVVVMVGPSVLAGVGAALPAQLAVLAATVSYAFAGVFGRRFRRMGVAPLATAAGQVTASTLMLVPVALLVDRPWTLPVPGLPVWGAVAGLAILSTALAYVLYFRILATAGATNLLLVTFLIPVSAILLGTLGLGERLDPRHYLGMALIGCGLAAIDGRLLARVR 301 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100355.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100355.1.1 >prot_L-digitata_M_contig100355.1.1 ID=prot_L-digitata_M_contig100355.1.1|Name=mRNA_L-digitata_M_contig100355.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=293bp LLFVLGGFWGCTFFFNEIAILELPPLSIILFRVGLASIILWIVVFASGITback to top mRNA from alignment at L-digitata_M_contig100355:2..880+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100355.1.1 ID=mRNA_L-digitata_M_contig100355.1.1|Name=mRNA_L-digitata_M_contig100355.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=879bp|location=Sequence derived from alignment at L-digitata_M_contig100355:2..880+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100355:2..880+ >mRNA_L-digitata_M_contig100355.1.1 ID=mRNA_L-digitata_M_contig100355.1.1|Name=mRNA_L-digitata_M_contig100355.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=879bp|location=Sequence derived from alignment at L-digitata_M_contig100355:2..880+ (Laminaria digitata LdigPH10_18mv male)back to top |